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Special Examples, Methods, Algorithms, Displays, etc. (under construction)

Section One: Differential Algebraic Equations (DAE's)

Plot of Solution: Illustrative Diagram

Jsim is able to solve some types of DAE's directly. An example of such a system is given by:

The exact solution is contained in the comments of the code.

Section Two: Stochastic Models: The Brusselator equations

Plot of Solution: Illustrative Diagram

Stochastic Models can be written in JSim's Mathematical Modeling Language. This model has been written both as an ODE model and a stochastic model so the user can learn how to write a stochastic model. Stochastic models are used when the number of molecules interacting is small and the reaction cannot be represented by continuum mechanics. Consider the following reactions:

A -> X, k1
2X+Y -> 3X, k2
B+X -> Y + C, k3
X -> D, k4

where A, B, C, D are constant and only X and Y vary.

The governing equations are

and

 
Tutorials/Special_Examples_Methods_Algorithms_Displays_etc.txt · Last modified: 08Sep08, 1:53 pm by garyr
 

Model development and archiving support at physiome.org provided by the following grants: NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.