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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Pathway 00680: Methane metabolism

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkOrganismSBMLMMLDownload Applet
aae00680 Aquifex aeolicus SBML MML
aau00680 Arthrobacter aurescens SBML MML
aav00680 Acidovorax avenae SBML MML
aba00680 Acidobacteria bacterium SBML MML
abc00680 Acinetobacter baumannii ACICU SBML MML
abm00680 Acinetobacter baumannii SDF SBML MML
abo00680 Alcanivorax borkumensis SBML MML
abu00680 Arcobacter butzleri SBML MML
aby00680 Acinetobacter baumannii AYE SBML MML
acb00680 Acinetobacter baumannii ATCC 17978 SBML MML
ace00680 Acidothermus cellulolyticus SBML MML
aci00680 Acinetobacter sp. ADP1 SBML MML
acr00680 Acidiphilium cryptum JF-5 SBML MML
ade00680 Anaeromyxobacter dehalogenans 2CP-C SBML MML
aeh00680 Alkalilimnicola ehrlichei SBML MML
afm00680 Aspergillus fumigatus SBML MML
afu00680 Archaeoglobus fulgidus SBML MML
afw00680 Anaeromyxobacter sp. Fw109-5 SBML MML
aga00680 Anopheles gambiae (mosquito) SBML MML
ago00680 Ashbya gossypii (Eremothecium gossypii) SBML MML
aha00680 Aeromonas hydrophila SBML MML
ajs00680 Acidovorax sp. JS42 SBML MML
amr00680 Acaryochloris marina SBML MML
amt00680 Alkaliphilus metalliredigens SBML MML
ana00680 Anabaena sp. PCC7120 SBML MML
ang00680 Aspergillus niger SBML MML
ani00680 Aspergillus nidulans SBML MML
aoe00680 Alkaliphilus oremlandii SBML MML
aor00680 Aspergillus oryzae SBML MML
apa00680 Actinobacillus pleuropneumoniae AP76 (serotype 7) SBML MML
ape00680 Aeropyrum pernix SBML MML
apj00680 Actinobacillus pleuropneumoniae JL03 (serotype 3) SBML MML
apl00680 Actinobacillus pleuropneumoniae L20 (serotype 5b) SBML MML
art00680 Arthrobacter sp. FB24 SBML MML
asa00680 Aeromonas salmonicida SBML MML
asu00680 Actinobacillus succinogenes SBML MML
atc00680 Agrobacterium tumefaciens C58 (Cereon) SBML MML
ath00680 Arabidopsis thaliana (thale cress) SBML MML
atu00680 Agrobacterium tumefaciens C58 SBML MML
ava00680 Anabaena variabilis SBML MML
azc00680 Azorhizobium caulinodans SBML MML
azo00680 Azoarcus sp. BH72 SBML MML
baa00680 Bacillus anthracis A2012 SBML MML
bab00680 Buchnera aphidicola Bp SBML MML
bac00680 Burkholderia ambifaria MC40-6 SBML MML
bad00680 Bifidobacterium adolescentis SBML MML
bam00680 Burkholderia cepacia SBML MML
ban00680 Bacillus anthracis Ames SBML MML
bar00680 Bacillus anthracis Ames 0581 SBML MML
bas00680 Buchnera aphidicola Sg SBML MML
bat00680 Bacillus anthracis Sterne SBML MML
bav00680 Bordetella avium SBML MML
bay00680 Bacillus amyloliquefaciens SBML MML
bba00680 Bdellovibrio bacteriovorus SBML MML
bbr00680 Bordetella bronchiseptica SBML MML
bbt00680 Bradyrhizobium sp. BTAi1 SBML MML
bca00680 Bacillus cereus ATCC 10987 SBML MML
bcc00680 Buchnera aphidicola Cc SBML MML
bce00680 Bacillus cereus ATCC 14579 SBML MML
bch00680 Burkholderia cenocepacia HI2424 SBML MML
bci00680 Baumannia cicadellinicola SBML MML
bcl00680 Bacillus clausii SBML MML
bcm00680 Burkholderia cenocepacia MC0-3 SBML MML
bcn00680 Burkholderia cenocepacia AU1054 SBML MML
bcs00680 Brucella canis SBML MML
bcy00680 Bacillus cytotoxis NVH 391-98 SBML MML
bcz00680 Bacillus cereus ZK SBML MML
bfl00680 Candidatus Blochmannia floridanus SBML MML
bfr00680 Bacteroides fragilis YCH46 SBML MML
bfs00680 Bacteroides fragilis NCTC9343 SBML MML
bha00680 Bacillus halodurans SBML MML
bid00680 Beijerinckia indica SBML MML
bja00680 Bradyrhizobium japonicum SBML MML
bld00680 Bacillus licheniformis DSM13 SBML MML
bli00680 Bacillus licheniformis ATCC 14580 SBML MML
blj00680 Bifidobacterium longum DJO10A SBML MML
blo00680 Bifidobacterium longum NCC2705 SBML MML
bma00680 Burkholderia mallei ATCC 23344 SBML MML
bmb00680 Brucella abortus 9-941 SBML MML
bmc00680 Brucella abortus S19 SBML MML
bme00680 Brucella melitensis 16M SBML MML
bmf00680 Brucella melitensis biovar Abortus SBML MML
bml00680 Burkholderia mallei NCTC 10229 SBML MML
bmn00680 Burkholderia mallei NCTC 10247 SBML MML
bms00680 Brucella suis 1330 SBML MML
bmt00680 Brucella suis ATCC 23445 SBML MML
bmu00680 Burkholderia multivorans ATCC 17616 (JGI) SBML MML
bmv00680 Burkholderia mallei SAVP1 SBML MML
bmy00680 Brugia malayi (filaria) SBML MML
bov00680 Brucella ovis SBML MML
bpa00680 Bordetella parapertussis SBML MML
bpd00680 Burkholderia pseudomallei 668 SBML MML
bpe00680 Bordetella pertussis SBML MML
bph00680 Burkholderia phymatum SBML MML
bpl00680 Burkholderia pseudomallei 1106a SBML MML
bpm00680 Burkholderia pseudomallei 1710b SBML MML
bpn00680 Candidatus Blochmannia pennsylvanicus SBML MML
bps00680 Burkholderia pseudomallei K96243 SBML MML
bpt00680 Bordetella petrii SBML MML
bpu00680 Bacillus pumilus SBML MML
bra00680 Bradyrhizobium sp. ORS278 SBML MML
bsu00680 Bacillus subtilis SBML MML
bta00680 Bos taurus (cow) SBML MML
bte00680 Burkholderia thailandensis SBML MML
bth00680 Bacteroides thetaiotaomicron SBML MML
btk00680 Bacillus thuringiensis 97-27 SBML MML
btl00680 Bacillus thuringiensis Al Hakam SBML MML
buc00680 Buchnera aphidicola APS SBML MML
bur00680 Burkholderia sp. 383 SBML MML
bvi00680 Burkholderia vietnamiensis SBML MML
bvu00680 Bacteroides vulgatus SBML MML
bwe00680 Bacillus weihenstephanensis SBML MML
bxe00680 Burkholderia xenovorans SBML MML
cac00680 Clostridium acetobutylicum SBML MML
cak00680 Caulobacter sp. K31 SBML MML
cal00680 Candida albicans SBML MML
cau00680 Chloroflexus aurantiacus SBML MML
cba00680 Clostridium botulinum A ATCC 19397 SBML MML
cbb00680 Clostridium botulinum B1 Okra SBML MML
cbd00680 Coxiella burnetii Dugway 5J108-111 SBML MML
cbe00680 Clostridium beijerinckii SBML MML
cbf00680 Clostridium botulinum F Langeland SBML MML
cbh00680 Clostridium botulinum A Hall SBML MML
cbk00680 Clostridium botulinum B Eklund 17B SBML MML
cbl00680 Clostridium botulinum A3 Loch Maree SBML MML
cbo00680 Clostridium botulinum A ATCC 3502 SBML MML
cbs00680 Coxiella burnetii RSA 331 SBML MML
cbu00680 Coxiella burnetii RSA 493 SBML MML
cch00680 Chlorobium chlorochromatii SBML MML
cco00680 Campylobacter concisus 13826 SBML MML
ccr00680 Caulobacter crescentus CB15 SBML MML
ccv00680 Campylobacter curvus SBML MML
cdf00680 Clostridium difficile SBML MML
cdi00680 Corynebacterium diphtheriae SBML MML
cef00680 Corynebacterium efficiens SBML MML
cel00680 Caenorhabditis elegans (nematode) SBML MML
cfa00680 Canis familiaris (dog) SBML MML
cff00680 Campylobacter fetus SBML MML
cgb00680 Corynebacterium glutamicum ATCC 13032 (Bielefeld) SBML MML
cgl00680 Corynebacterium glutamicum ATCC 13032 (Kyowa Hakko) SBML MML
cgr00680 Candida glabrata SBML MML
cgt00680 Corynebacterium glutamicum R SBML MML
cha00680 Campylobacter hominis ATCC BAA-381 SBML MML
chu00680 Cytophaga hutchinsonii SBML MML
chy00680 Carboxydothermus hydrogenoformans SBML MML
cja00680 Cellvibrio japonicus SBML MML
cjd00680 Campylobacter jejuni subsp. doylei 269.97 SBML MML
cje00680 Campylobacter jejuni NCTC11168 SBML MML
cjj00680 Campylobacter jejuni 81-176 SBML MML
cjk00680 Corynebacterium jeikeium SBML MML
cjr00680 Campylobacter jejuni RM1221 SBML MML
cju00680 Campylobacter jejuni 81116 SBML MML
ckl00680 Clostridium kluyveri DSM 555 SBML MML
cko00680 Citrobacter koseri ATCC BAA-895 SBML MML
cme00680 Cyanidioschyzon merolae SBML MML
cmi00680 Clavibacter michiganensis subsp. michiganensis SBML MML
cms00680 Clavibacter michiganensis subsp. sepedonicus SBML MML
cnb00680 Cryptococcus neoformans B-3501A SBML MML
cne00680 Cryptococcus neoformans JEC21 SBML MML
cno00680 Clostridium novyi SBML MML
cpb00680 Chlorobium phaeobacteroides BS1 SBML MML
cph00680 Chlorobium phaeobacteroides DSM 266 SBML MML
cpr00680 Clostridium perfringens SM101 SBML MML
cps00680 Colwellia psychrerythraea SBML MML
cpy00680 Clostridium phytofermentans SBML MML
cre00680 Chlamydomonas reinhardtii SBML MML
crp00680 Candidatus Carsonella ruddii SBML MML
csa00680 Chromohalobacter salexigens SBML MML
csc00680 Caldicellulosiruptor saccharolyticus SBML MML
ctc00680 Clostridium tetani E88 SBML MML
cte00680 Chlorobaculum tepidum SBML MML
cth00680 Clostridium thermocellum SBML MML
cti00680 Cupriavidus taiwanensis SBML MML
cur00680 Corynebacterium urealyticum SBML MML
cvi00680 Chromobacterium violaceum SBML MML
cyt00680 Cyanothece sp. ATCC 51142 SBML MML
daag00680 (Undocumented) SBML MML
dac00680 Delftia acidovorans SBML MML
dame00680 (Undocumented) SBML MML
dar00680 Dechloromonas aromatica SBML MML
dau00680 Candidatus Desulforudis audaxviator SBML MML
dbmo00680 Bombyx mori (silkmoth) SBML MML
dcbr00680 (Undocumented) SBML MML
dcin00680 (Undocumented) SBML MML
dde00680 Desulfovibrio desulfuricans G20 SBML MML
ddi00680 Dictyostelium discoideum SBML MML
deb00680 Dehalococcoides sp. BAV1 SBML MML
decb00680 (Undocumented) SBML MML
deh00680 Dehalococcoides sp. CBDB1 SBML MML
det00680 Dehalococcoides ethenogenes SBML MML
dfru00680 Fugu rubripes (Japanese puffer fish) SBML MML
dge00680 Deinococcus geothermalis SBML MML
dha00680 Debaryomyces hansenii SBML MML
dkwa00680 Kluyveromyces waltii SBML MML
dme00680 Drosophila melanogaster (fruit fly) SBML MML
dno00680 Dichelobacter nodosus SBML MML
dol00680 Candidatus Desulfococcus oleovorans SBML MML
dola00680 Oryzias latipes (Japanese medaka) SBML MML
dota00680 Ostreococcus tauri SBML MML
dpkn00680 (Undocumented) SBML MML
dpo00680 Drosophila pseudoobscura pseudoobscura SBML MML
dpop00680 (Undocumented) SBML MML
dps00680 Desulfotalea psychrophila SBML MML
dptm00680 (Undocumented) SBML MML
dra00680 Deinococcus radiodurans SBML MML
dre00680 Danio rerio (zebrafish) SBML MML
drm00680 Desulfotomaculum reducens SBML MML
dsba00680 Saccharomyces bayanus SBML MML
dsh00680 Dinoroseobacter shibae SBML MML
dsmi00680 Saccharomyces mikatae SBML MML
dspd00680 (Undocumented) SBML MML
dsy00680 Desulfitobacterium hafniense Y51 SBML MML
dtni00680 Tetraodon nigroviridis (green spotted puffer) SBML MML
dtps00680 (Undocumented) SBML MML
dvl00680 Desulfovibrio vulgaris DP4 SBML MML
dvu00680 Desulfovibrio vulgaris Hildenborough SBML MML
dvvi00680 (Undocumented) SBML MML
eacp00680 (Undocumented) SBML MML
eath00680 Arabidopsis thaliana (thale cress) (EST) SBML MML
eba00680 Aromatoleum aromaticum EbN1 SBML MML
ebna00680 Brassica napus (rape) (EST) SBML MML
ebvl00680 Beta vulgaris (beet) (EST) SBML MML
eca00680 Erwinia carotovora SBML MML
ecan00680 Capsicum annuum (chile pepper) (EST) SBML MML
ecc00680 Escherichia coli CFT073 (UPEC) SBML MML
ecd00680 Escherichia coli K-12 DH10B SBML MML
ece00680 Escherichia coli O157 EDL933 (EHEC) SBML MML
eci00680 Escherichia coli UTI89 (UPEC) SBML MML
ecj00680 Escherichia coli K-12 W3110 SBML MML
ecl00680 Escherichia coli ATCC 8739 SBML MML
ecm00680 Escherichia coli SECEC SBML MML
eco00680 Escherichia coli K-12 MG1655 SBML MML
ecp00680 Escherichia coli 536 (UPEC) SBML MML
ecs00680 Escherichia coli O157 Sakai (EHEC) SBML MML
ecsi00680 Citrus sinensis (Valencia orange) (EST) SBML MML
ecsv00680 Ciona savignyi (EST) SBML MML
ecv00680 Escherichia coli APEC O1 SBML MML
ecw00680 Escherichia coli E24377A SBML MML
ecx00680 Escherichia coli HS SBML MML
eees00680 Euphorbia esula (leafy spurge) (EST) SBML MML
efa00680 Enterococcus faecalis SBML MML
efar00680 Festuca arundinacea (tall fescue) (EST) SBML MML
egar00680 Gossypium arboreum (tree cotton) (EST) SBML MML
eghi00680 Gossypium hirsutum (upland cotton) (EST) SBML MML
egma00680 Glycine max (soybean) (EST) SBML MML
egra00680 Gossypium raimondii (EST) SBML MML
ehan00680 Helianthus annuus (sunflower) (EST) SBML MML
ehvu00680 Hordeum vulgare (barley) (EST) SBML MML
eini00680 Ipomoea nil (Japanese morning glory) (EST) SBML MML
eli00680 Erythrobacter litoralis SBML MML
elja00680 Lotus japonicus (lotus) (EST) SBML MML
elpe00680 Lactuca perennis (blue lettuce) (EST) SBML MML
elsi00680 Lactuca saligna (willow-leaf lettuce) (EST) SBML MML
elst00680 Lactuca sativa (lettuce) (EST) SBML MML
elvi00680 Lactuca virosa (wild lettuce) (EST) SBML MML
emec00680 Manihot esculenta (cassava) (EST) SBML MML
emte00680 Molgula tectiformis (EST) SBML MML
emtr00680 Medicago truncatula (barrel medic) (EST) SBML MML
enbe00680 Nicotiana benthamiana (EST) SBML MML
ent00680 Enterobacter sp. 638 SBML MML
enta00680 Nicotiana tabacum (tobacco) (EST) SBML MML
eosa00680 Oryza sativa (rice) (EST) SBML MML
eosi00680 Oryza sativa indica (Indian rice) (EST) SBML MML
eosj00680 Oryza sativa japonica (Japanese rice) (EST) SBML MML
epgl00680 Picea glauca (white spruce) (EST) SBML MML
epop00680 Populus trichocarpa (black cottonwood) (EST) SBML MML
eppa00680 (Undocumented) SBML MML
eppi00680 Pinus pinaster (maritime pine) (EST) SBML MML
eppp00680 Physcomitrella patens subsp. patens (EST) SBML MML
epps00680 Prunus persica (peach) (EST) SBML MML
epsi00680 Picea sitchensis (sitka spruce) (EST) SBML MML
epta00680 Pinus taeda (loblolly pine) (EST) SBML MML
eptp00680 Populus tremula (European aspen) (EST) SBML MML
esa00680 Enterobacter sakazakii SBML MML
esbi00680 Sorghum bicolor (sorghum) (EST) SBML MML
esi00680 Exiguobacterium sibiricum SBML MML
esly00680 Solanum lycopersicum (tomato) (EST) SBML MML
esof00680 Saccharum officinarum (sugarcane) (EST) SBML MML
espp00680 (Undocumented) SBML MML
espu00680 Strongylocentrotus purpuratus (purple sea urchin) (EST) SBML MML
estu00680 Solanum tuberosum (potato) (EST) SBML MML
eta00680 Erwinia tasmaniensis SBML MML
etae00680 Triticum aestivum (wheat) (EST) SBML MML
evvi00680 Vitis vinifera (wine grape) (EST) SBML MML
ezel00680 (Undocumented) SBML MML
ezma00680 Zea mays (maize) (EST) SBML MML
fal00680 Frankia alni SBML MML
fgr00680 Fusarium graminearum SBML MML
fjo00680 Flavobacterium johnsoniae SBML MML
fma00680 Finegoldia magna SBML MML
fno00680 Fervidobacterium nodosum SBML MML
fph00680 Francisella philomiragia SBML MML
fps00680 Flavobacterium psychrophilum SBML MML
fra00680 Frankia sp. CcI3 SBML MML
fre00680 Frankia sp. EAN1pec SBML MML
fta00680 Francisella tularensis subsp. holarctica FTNF002-00 SBML MML
ftf00680 Francisella tularensis subsp. tularensis FSC 198 SBML MML
fth00680 Francisella tularensis subsp. holarctica OSU18 SBML MML
ftl00680 Francisella tularensis subsp. holarctica LVS SBML MML
ftm00680 Francisella tularensis subsp. mediasiatica FSC147 SBML MML
ftn00680 Francisella tularensis subsp. novicida U112 SBML MML
ftu00680 Francisella tularensis subsp. tularensis SCHU S4 SBML MML
ftw00680 Francisella tularensis subsp. tularensis WY96-3418 SBML MML
gbe00680 Granulobacter bethesdensis SBML MML
gdi00680 Gluconacetobacter diazotrophicus PAl 5 (Brazil) SBML MML
gfo00680 Gramella forsetii SBML MML
gga00680 Gallus gallus (chicken) SBML MML
gka00680 Geobacillus kaustophilus SBML MML
glo00680 Geobacter lovleyi SBML MML
gme00680 Geobacter metallireducens SBML MML
gox00680 Gluconobacter oxydans SBML MML
gsu00680 Geobacter sulfurreducens SBML MML
gur00680 Geobacter uraniumreducens SBML MML
gvi00680 Gloeobacter violaceus SBML MML
hac00680 Helicobacter acinonychis SBML MML
hal00680 Halobacterium sp. NRC-1 SBML MML
har00680 Herminiimonas arsenicoxydans SBML MML
hau00680 Herpetosiphon aurantiacus SBML MML
hbu00680 Hyperthermus butylicus SBML MML
hch00680 Hahella chejuensis SBML MML
hha00680 Halorhodospira halophila SBML MML
hhe00680 Helicobacter hepaticus SBML MML
hin00680 Haemophilus influenzae Rd KW20 (serotype d) SBML MML
hip00680 Haemophilus influenzae PittEE SBML MML
hiq00680 Haemophilus influenzae PittGG SBML MML
hit00680 Haemophilus influenzae 86-028NP (nontypeable) SBML MML
hma00680 Haloarcula marismortui SBML MML
hmo00680 Heliobacterium modesticaldum SBML MML
hne00680 Hyphomonas neptunium SBML MML
hpa00680 Helicobacter pylori HPAG1 SBML MML
hpj00680 Helicobacter pylori J99 SBML MML
hpy00680 Helicobacter pylori 26695 SBML MML
hsa00680 Homo sapiens (human) SBML MML
hsl00680 Halobacterium salinarum R1 SBML MML
hsm00680 Haemophilus somnus 2336 SBML MML
hso00680 Haemophilus somnus 129PT SBML MML
hwa00680 Haloquadratum walsbyi SBML MML
iho00680 Ignicoccus hospitalis SBML MML
ilo00680 Idiomarina loihiensis SBML MML
jan00680 Jannaschia sp. CCS1 SBML MML
kcr00680 Candidatus Korarchaeum cryptofilum SBML MML
kla00680 Kluyveromyces lactis SBML MML
kpn00680 Klebsiella pneumoniae SBML MML
kra00680 Kineococcus radiotolerans SBML MML
krh00680 Kocuria rhizophila SBML MML
lac00680 Lactobacillus acidophilus SBML MML
lbc00680 Laccaria bicolor SBML MML
lbf00680 Leptospira biflexa serovar Patoc Patoc 1 (Ames) SBML MML
lbi00680 Leptospira biflexa serovar Patoc Patoc 1 (Paris) SBML MML
lbj00680 Leptospira borgpetersenii JB197 SBML MML
lbl00680 Leptospira borgpetersenii L550 SBML MML
lbr00680 Lactobacillus brevis SBML MML
lbu00680 Lactobacillus delbrueckii ATCC BAA-365 SBML MML
lca00680 Lactobacillus casei ATCC 334 SBML MML
lch00680 Leptothrix cholodnii SBML MML
lfe00680 Lactobacillus fermentum SBML MML
lga00680 Lactobacillus gasseri SBML MML
lhe00680 Lactobacillus helveticus SBML MML
lic00680 Leptospira interrogans serovar Copenhageni SBML MML
lil00680 Leptospira interrogans serovar lai SBML MML
lin00680 Listeria innocua SBML MML
lip00680 Lawsonia intracellularis SBML MML
ljo00680 Lactobacillus johnsonii SBML MML
lla00680 Lactococcus lactis subsp. lactis IL1403 SBML MML
llc00680 Lactococcus lactis subsp. cremoris SK11 SBML MML
llm00680 Lactococcus lactis subsp. cremoris MG1363 SBML MML
lma00680 Leishmania major SBML MML
lme00680 Leuconostoc mesenteroides SBML MML
lmf00680 Listeria monocytogenes F2365 SBML MML
lmo00680 Listeria monocytogenes EGD-e SBML MML
lpc00680 Legionella pneumophila Corby SBML MML
lpf00680 Legionella pneumophila Lens SBML MML
lpl00680 Lactobacillus plantarum WCFS1 SBML MML
lpn00680 Legionella pneumophila Philadelphia 1 SBML MML
lpp00680 Legionella pneumophila Paris SBML MML
lre00680 Lactobacillus reuteri DSM 20016 SBML MML
lsa00680 Lactobacillus sakei SBML MML
lsl00680 Lactobacillus salivarius SBML MML
lsp00680 Lysinibacillus sphaericus SBML MML
lwe00680 Listeria welshimeri SLCC5334 SBML MML
lxx00680 Leifsonia xyli xyli CTCB07 SBML MML
maa00680 Mycoplasma agalactiae SBML MML
mab00680 Mycobacterium abscessus ATCC 19977T SBML MML
mac00680 Methanosarcina acetivorans SBML MML
mae00680 Methanococcus aeolicus SBML MML
mag00680 Magnetospirillum magneticum SBML MML
maq00680 Marinobacter aquaeolei SBML MML
mar00680 Microcystis aeruginosa SBML MML
mav00680 Mycobacterium avium 104 SBML MML
mba00680 Methanosarcina barkeri SBML MML
mbb00680 Mycobacterium bovis BCG Pasteur 1173P2 SBML MML
mbn00680 Candidatus Methanoregula boonei SBML MML
mbo00680 Mycobacterium bovis AF2122/97 SBML MML
mbr00680 Monosiga brevicollis SBML MML
mbu00680 Methanococcoides burtonii SBML MML
mca00680 Methylococcus capsulatus SBML MML
mcc00680 Macaca mulatta (rhesus monkey) SBML MML
mcp00680 Mycoplasma capricolum SBML MML
mdo00680 Monodelphis domestica (opossum) SBML MML
mem00680 Methanoculleus marisnigri SBML MML
mes00680 Mesorhizobium sp. BNC1 SBML MML
met00680 Methylobacterium sp. 4-46 SBML MML
mex00680 Methylobacterium extorquens SBML MML
mfa00680 Methylobacillus flagellatus SBML MML
mgi00680 Mycobacterium gilvum SBML MML
mgl00680 Malassezia globosa SBML MML
mgm00680 Magnetococcus sp. MC-1 SBML MML
mgr00680 Magnaporthe grisea SBML MML
mhu00680 Methanospirillum hungatei SBML MML
mja00680 Methanococcus jannaschii SBML MML
mjl00680 Mycobacterium sp. JLS SBML MML
mka00680 Methanopyrus kandleri SBML MML
mkm00680 Mycobacterium sp. KMS SBML MML
mla00680 Methanocorpusculum labreanum SBML MML
mlo00680 Mesorhizobium loti SBML MML
mma00680 Methanosarcina mazei SBML MML
mmc00680 Mycobacterium sp. MCS SBML MML
mmi00680 Mycobacterium marinum M SBML MML
mmp00680 Methanococcus maripaludis S2 SBML MML
mmq00680 Methanococcus maripaludis C5 SBML MML
mmr00680 Maricaulis maris SBML MML
mms00680 Minibacterium massiliensis SBML MML
mmu00680 Mus musculus (mouse) SBML MML
mmw00680 Marinomonas sp. MWYL1 SBML MML
mmx00680 Methanococcus maripaludis C6 SBML MML
mmy00680 Mycoplasma mycoides SBML MML
mmz00680 Methanococcus maripaludis C7 SBML MML
mpa00680 Mycobacterium avium paratuberculosis SBML MML
mpt00680 Methylibium petroleiphilum SBML MML
mpu00680 Mycoplasma pulmonis SBML MML
mra00680 Mycobacterium tuberculosis H37Ra SBML MML
mrd00680 Methylobacterium radiotolerans SBML MML
mse00680 Metallosphaera sedula SBML MML
msi00680 Methanobrevibacter smithii ATCC 35061 SBML MML
msm00680 Mycobacterium smegmatis SBML MML
mst00680 Methanosphaera stadtmanae SBML MML
msu00680 Mannheimia succiniciproducens SBML MML
mta00680 Moorella thermoacetica SBML MML
mtc00680 Mycobacterium tuberculosis CDC1551 SBML MML
mtf00680 Mycobacterium tuberculosis F11 SBML MML
mth00680 Methanobacterium thermoautotrophicum SBML MML
mtp00680 Methanosaeta thermophila SBML MML
mtu00680 Mycobacterium tuberculosis H37Rv SBML MML
mul00680 Mycobacterium ulcerans SBML MML
mva00680 Mycobacterium vanbaalenii SBML MML
mvn00680 Methanococcus vannielii SBML MML
mxa00680 Myxococcus xanthus SBML MML
nar00680 Novosphingobium aromaticivorans SBML MML
nca00680 Nocardioides sp. JS614 SBML MML
ncr00680 Neurospora crassa SBML MML
net00680 Nitrosomonas eutropha SBML MML
neu00680 Nitrosomonas europaea SBML MML
nfa00680 Nocardia farcinica SBML MML
ngo00680 Neisseria gonorrhoeae SBML MML
nha00680 Nitrobacter hamburgensis SBML MML
nis00680 Nitratiruptor sp. SB155-2 SBML MML
nma00680 Neisseria meningitidis Z2491 (serogroup A) SBML MML
nmc00680 Neisseria meningitidis FAM18 (serogroup C) SBML MML
nme00680 Neisseria meningitidis MC58 (serogroup B) SBML MML
nmn00680 Neisseria meningitidis 053442 (serogroup C) SBML MML
nmu00680 Nitrosospira multiformis SBML MML
noc00680 Nitrosococcus oceani SBML MML
nph00680 Natronomonas pharaonis SBML MML
npu00680 Nostoc punctiforme SBML MML
nve00680 Nematostella vectensis (sea anemone) SBML MML
nwi00680 Nitrobacter winogradskyi SBML MML
oaa00680 Ornithorhynchus anatinus (platypus) SBML MML
oan00680 Ochrobactrum anthropi SBML MML
oih00680 Oceanobacillus iheyensis SBML MML
olu00680 Ostreococcus lucimarinus SBML MML
ooe00680 Oenococcus oeni SBML MML
osa00680 Oryza sativa japonica (Japanese rice) SBML MML
ote00680 Opitutus terrae SBML MML
pab00680 Pyrococcus abyssi SBML MML
pac00680 Propionibacterium acnes SBML MML
pae00680 Pseudomonas aeruginosa PAO1 SBML MML
pai00680 Pyrobaculum aerophilum SBML MML
pan00680 Podospora anserina SBML MML
pap00680 Pseudomonas aeruginosa PA7 SBML MML
par00680 Psychrobacter arcticum SBML MML
pas00680 Pyrobaculum arsenaticum SBML MML
pat00680 Pseudoalteromonas atlantica SBML MML
pau00680 Pseudomonas aeruginosa UCBPP-PA14 SBML MML
pca00680 Pelobacter carbinolicus SBML MML
pcl00680 Pyrobaculum calidifontis SBML MML
pcr00680 Psychrobacter cryohalolentis SBML MML
pde00680 Paracoccus denitrificans SBML MML
pdi00680 Parabacteroides distasonis SBML MML
pen00680 Pseudomonas entomophila SBML MML
pfa00680 Plasmodium falciparum 3D7 SBML MML
pfl00680 Pseudomonas fluorescens Pf-5 SBML MML
pfo00680 Pseudomonas fluorescens Pf0-1 SBML MML
pfu00680 Pyrococcus furiosus SBML MML
pha00680 Pseudoalteromonas haloplanktis SBML MML
pho00680 Pyrococcus horikoshii SBML MML
pic00680 Pichia stipitis SBML MML
pin00680 Psychromonas ingrahamii SBML MML
pis00680 Pyrobaculum islandicum SBML MML
pla00680 Parvibaculum lavamentivorans SBML MML
plt00680 Pelodictyon luteolum SBML MML
plu00680 Photorhabdus luminescens SBML MML
pma00680 Prochlorococcus marinus SS120 SBML MML
pmb00680 Prochlorococcus marinus AS9601 SBML MML
pmc00680 Prochlorococcus marinus MIT 9515 SBML MML
pme00680 Prochlorococcus marinus NATL1A SBML MML
pmf00680 Prochlorococcus marinus MIT 9303 SBML MML
pmg00680 Prochlorococcus marinus MIT 9301 SBML MML
pmh00680 Prochlorococcus marinus MIT 9215 SBML MML
pmj00680 Prochlorococcus marinus MIT 9211 SBML MML
pmn00680 Prochlorococcus marinus NATL2A SBML MML
pmo00680 Petrotoga mobilis SBML MML
pmt00680 Prochlorococcus marinus MIT9313 SBML MML
pmu00680 Pasteurella multocida SBML MML
pmy00680 Pseudomonas mendocina SBML MML
pna00680 Polaromonas naphthalenivorans SBML MML
pne00680 Polynucleobacter necessarius SBML MML
pnu00680 Polynucleobacter sp. QLW-P1DMWA-1 SBML MML
pol00680 Polaromonas sp. JS666 SBML MML
ppd00680 Pelobacter propionicus SBML MML
ppf00680 Pseudomonas putida F1 SBML MML
ppg00680 Pseudomonas putida GB-1 SBML MML
ppp00680 Physcomitrella patens subsp. patens SBML MML
ppr00680 Photobacterium profundum SBML MML
ppu00680 Pseudomonas putida KT2440 SBML MML
ppw00680 Pseudomonas putida W619 SBML MML
prw00680 Psychrobacter sp. PRwf-1 SBML MML
psa00680 Pseudomonas stutzeri SBML MML
psb00680 Pseudomonas syringae pv. syringae B728a SBML MML
psp00680 Pseudomonas syringae pv. phaseolicola 1448A SBML MML
pst00680 Pseudomonas syringae pv. tomato DC3000 SBML MML
pth00680 Pelotomaculum thermopropionicum SBML MML
pto00680 Picrophilus torridus SBML MML
ptr00680 Pan troglodytes (chimpanzee) SBML MML
pub00680 Candidatus Pelagibacter ubique SBML MML
pvi00680 Prosthecochloris vibrioformis SBML MML
pyo00680 Plasmodium yoelii SBML MML
rba00680 Rhodopirellula baltica SBML MML
rca00680 Roseiflexus castenholzii DSM13941 SBML MML
rci00680 Uncultured methanogenic archaeon RC-I SBML MML
rde00680 Roseobacter denitrificans SBML MML
rec00680 Rhizobium etli CIAT 652 SBML MML
reh00680 Ralstonia eutropha H16 SBML MML
ret00680 Rhizobium etli CFN 42 SBML MML
reu00680 Ralstonia eutropha JMP134 SBML MML
rfr00680 Rhodoferax ferrireducens SBML MML
rha00680 Rhodococcus sp. RHA1 SBML MML
rle00680 Rhizobium leguminosarum SBML MML
rma00680 Candidatus Ruthia magnifica SBML MML
rme00680 Ralstonia metallidurans SBML MML
rno00680 Rattus norvegicus (rat) SBML MML
rpa00680 Rhodopseudomonas palustris CGA009 SBML MML
rpb00680 Rhodopseudomonas palustris HaA2 SBML MML
rpc00680 Rhodopseudomonas palustris BisB18 SBML MML
rpd00680 Rhodopseudomonas palustris BisB5 SBML MML
rpe00680 Rhodopseudomonas palustris BisA53 SBML MML
rpt00680 Rhodopseudomonas palustris TIE-1 SBML MML
rrs00680 Roseiflexus sp. RS-1 SBML MML
rru00680 Rhodospirillum rubrum SBML MML
rsa00680 Renibacterium salmoninarum SBML MML
rsh00680 Rhodobacter sphaeroides ATCC 17029 SBML MML
rso00680 Ralstonia solanacearum SBML MML
rsp00680 Rhodobacter sphaeroides 2.4.1 SBML MML
rsq00680 Rhodobacter sphaeroides ATCC 17025 SBML MML
rxy00680 Rubrobacter xylanophilus SBML MML
saa00680 Staphylococcus aureus USA300 SBML MML
sab00680 Staphylococcus aureus RF122 SBML MML
sac00680 Staphylococcus aureus COL SBML MML
sae00680 Staphylococcus aureus Newman SBML MML
sag00680 Streptococcus agalactiae 2603 (serotype V) SBML MML
sah00680 Staphylococcus aureus JH1 SBML MML
sai00680 Sulfolobus acidocaldarius SBML MML
saj00680 Staphylococcus aureus JH9 SBML MML
sak00680 Streptococcus agalactiae A909 (serotype Ia) SBML MML
sal00680 Sphingopyxis alaskensis SBML MML
sam00680 Staphylococcus aureus MW2 SBML MML
san00680 Streptococcus agalactiae NEM316 (serotype III) SBML MML
sao00680 Staphylococcus aureus NCTC8325 SBML MML
saq00680 Salinispora arenicola SBML MML
sar00680 Staphylococcus aureus MRSA252 SBML MML
sas00680 Staphylococcus aureus MSSA476 SBML MML
sat00680 Syntrophus aciditrophicus SBML MML
sau00680 Staphylococcus aureus N315 SBML MML
sav00680 Staphylococcus aureus Mu50 SBML MML
saw00680 Staphylococcus aureus Mu3 SBML MML
sax00680 Staphylococcus aureus USA300 TCH1516 SBML MML
saz00680 Shewanella amazonensis SBML MML
sbc00680 Shigella boydii CDC 3083-94 SBML MML
sbl00680 Shewanella baltica OS155 SBML MML
sbm00680 Shewanella baltica OS185 SBML MML
sbn00680 Shewanella baltica OS195 SBML MML
sbo00680 Shigella boydii Sb227 SBML MML
sce00680 Saccharomyces cerevisiae SBML MML
scl00680 Sorangium cellulosum SBML MML
sco00680 Streptomyces coelicolor SBML MML
sde00680 Saccharophagus degradans SBML MML
sdn00680 Shewanella denitrificans SBML MML
sdy00680 Shigella dysenteriae SBML MML
sec00680 Salmonella enterica subsp. enterica serovar Choleraesuis SBML MML
sen00680 Saccharopolyspora erythraea SBML MML
sep00680 Staphylococcus epidermidis ATCC 12228 SBML MML
ser00680 Staphylococcus epidermidis RP62A SBML MML
ses00680 Salmonella enterica subsp. arizonae SBML MML
sfl00680 Shigella flexneri 301 (serotype 2a) SBML MML
sfr00680 Shewanella frigidimarina SBML MML
sfu00680 Syntrophobacter fumaroxidans SBML MML
sfv00680 Shigella flexneri 8401 (serotype 5b) SBML MML
sfx00680 Shigella flexneri 2457T (serotype 2a) SBML MML
sgl00680 Sodalis glossinidius SBML MML
sgo00680 Streptococcus gordonii SBML MML
sgr00680 Streptomyces griseus SBML MML
sha00680 Staphylococcus haemolyticus SBML MML
she00680 Shewanella sp. MR-4 SBML MML
shl00680 Shewanella halifaxensis SBML MML
shm00680 Shewanella sp. MR-7 SBML MML
shn00680 Shewanella sp. ANA-3 SBML MML
shw00680 Shewanella sp. W3-18-1 SBML MML
sil00680 Ruegeria pomeroyi SBML MML
sit00680 Silicibacter sp. TM1040 SBML MML
slo00680 Shewanella loihica SBML MML
sma00680 Streptomyces avermitilis SBML MML
smd00680 Sinorhizobium medicae SBML MML
sme00680 Sinorhizobium meliloti SBML MML
sml00680 Stenotrophomonas maltophilia SBML MML
smr00680 Staphylothermus marinus SBML MML
smu00680 Streptococcus mutans SBML MML
son00680 Shewanella oneidensis SBML MML
spa00680 Streptococcus pyogenes MGAS10394 (serotype M6) SBML MML
spb00680 Streptococcus pyogenes MGAS6180 (serotype M28) SBML MML
spc00680 Shewanella putrefaciens SBML MML
spd00680 Streptococcus pneumoniae D39 SBML MML
spe00680 Serratia proteamaculans SBML MML
spf00680 Streptococcus pyogenes Manfredo (serotype M5) SBML MML
spg00680 Streptococcus pyogenes MGAS315 (serotype M3) SBML MML
spj00680 Streptococcus pyogenes MGAS2096 (serotype M12) SBML MML
spl00680 Shewanella pealeana SBML MML
spm00680 Streptococcus pyogenes MGAS8232 (serotype M18) SBML MML
spn00680 Streptococcus pneumoniae TIGR4 SBML MML
spo00680 Schizosaccharomyces pombe SBML MML
spq00680 Salmonella enterica subsp. enterica serovar Paratyphi B SBML MML
spr00680 Streptococcus pneumoniae R6 SBML MML
sps00680 Streptococcus pyogenes SSI-1 (serotype M3) SBML MML
spt00680 Salmonella enterica subsp. enterica serovar Paratyphi A SBML MML
spu00680 Strongylocentrotus purpuratus (purple sea urchin) SBML MML
spv00680 Streptococcus pneumoniae Hungary19A 6 SBML MML
spw00680 Streptococcus pneumoniae CGSP14 (serotype 14) SBML MML
spy00680 Streptococcus pyogenes SF370 (serotype M1) SBML MML
spz00680 Streptococcus pyogenes MGAS5005 (serotype M1) SBML MML
sru00680 Salinibacter ruber SBML MML
ssa00680 Streptococcus sanguinis SBML MML
ssc00680 Sus scrofa (pig) SBML MML
sse00680 Shewanella sediminis SBML MML
ssn00680 Shigella sonnei SBML MML
sso00680 Sulfolobus solfataricus SBML MML
ssp00680 Staphylococcus saprophyticus SBML MML
ssu00680 Streptococcus suis 05ZYH33 SBML MML
ssv00680 Streptococcus suis 98HAH33 SBML MML
stc00680 Streptococcus thermophilus CNRZ1066 SBML MML
ste00680 Streptococcus thermophilus LMD-9 SBML MML
sth00680 Symbiobacterium thermophilum SBML MML
stl00680 Streptococcus thermophilus LMG18311 SBML MML
stm00680 Salmonella typhimurium LT2 SBML MML
sto00680 Sulfolobus tokodaii SBML MML
stp00680 Salinispora tropica SBML MML
stt00680 Salmonella enterica subsp. enterica serovar Typhi Ty2 SBML MML
sty00680 Salmonella enterica subsp. enterica serovar Typhi CT18 SBML MML
sul00680 Sulfurihydrogenibium sp. YO3AOP1 SBML MML
sun00680 Sulfurovum sp. NBC37-1 SBML MML
sus00680 Solibacter usitatus SBML MML
swd00680 Shewanella woodyi ATCC 51908 SBML MML
swi00680 Sphingomonas wittichii SBML MML
swo00680 Syntrophomonas wolfei SBML MML
syc00680 Synechococcus elongatus PCC6301 SBML MML
syd00680 Synechococcus sp. CC9605 SBML MML
syf00680 Synechococcus elongatus PCC7942 SBML MML
syg00680 Synechococcus sp. CC9311 SBML MML
syn00680 Synechocystis sp. PCC6803 SBML MML
syp00680 Synechococcus sp. PCC7002 SBML MML
syr00680 Synechococcus sp. RCC307 SBML MML
syx00680 Synechococcus sp. WH7803 SBML MML
tac00680 Thermoplasma acidophilum SBML MML
tbd00680 Thiobacillus denitrificans SBML MML
tca00680 Tribolium castaneum (red flour beetle) SBML MML
tcx00680 Thiomicrospira crunogena SBML MML
tdn00680 Thiomicrospira denitrificans SBML MML
ter00680 Trichodesmium erythraeum SBML MML
tet00680 Tetrahymena thermophila SBML MML
tfu00680 Thermobifida fusca SBML MML
tko00680 Thermococcus kodakaraensis SBML MML
tle00680 Thermotoga lettingae SBML MML
tme00680 Thermosipho melanesiensis SBML MML
tne00680 Thermoproteus neutrophilus SBML MML
tpe00680 Thermofilum pendens SBML MML
tpt00680 Thermotoga petrophila SBML MML
tpv00680 Theileria parva SBML MML
trq00680 Thermotoga sp. RQ2 SBML MML
tte00680 Thermoanaerobacter tengcongensis SBML MML
tth00680 Thermus thermophilus HB27 SBML MML
ttj00680 Thermus thermophilus HB8 SBML MML
tvo00680 Thermoplasma volcanium SBML MML
uma00680 Ustilago maydis SBML MML
vch00680 Vibrio cholerae O1 SBML MML
vco00680 Vibrio cholerae O395 SBML MML
vei00680 Verminephrobacter eiseniae SBML MML
vfi00680 Vibrio fischeri SBML MML
vha00680 Vibrio harveyi SBML MML
vok00680 Candidatus Vesicomyosocius okutanii SBML MML
vpa00680 Vibrio parahaemolyticus SBML MML
vpo00680 Vanderwaltozyma polyspora SBML MML
vvu00680 Vibrio vulnificus CMCP6 SBML MML
vvy00680 Vibrio vulnificus YJ016 SBML MML
wsu00680 Wolinella succinogenes SBML MML
xac00680 Xanthomonas axonopodis SBML MML
xau00680 Xanthobacter autotrophicus SBML MML
xcb00680 Xanthomonas campestris pv. campestris 8004 SBML MML
xcc00680 Xanthomonas campestris pv. campestris ATCC 33913 SBML MML
xcv00680 Xanthomonas campestris pv. vesicatoria SBML MML
xfa00680 Xylella fastidiosa 9a5c SBML MML
xfm00680 Xylella fastidiosa M12 SBML MML
xfn00680 Xylella fastidiosa M23 SBML MML
xft00680 Xylella fastidiosa Temecula1 SBML MML
xla00680 Xenopus laevis (African clawed frog) SBML MML
xom00680 Xanthomonas oryzae MAFF311018 SBML MML
xoo00680 Xanthomonas oryzae KACC10331 SBML MML
xtr00680 Xenopus tropicalis (western clawed frog) SBML MML
yen00680 Yersinia enterocolitica SBML MML
yli00680 Yarrowia lipolytica SBML MML
ypa00680 Yersinia pestis Antiqua SBML MML
ype00680 Yersinia pestis CO92 SBML MML
ypg00680 Yersinia pestis Angola SBML MML
ypi00680 Yersinia pseudotuberculosis IP31758 SBML MML
ypk00680 Yersinia pestis KIM SBML MML
ypm00680 Yersinia pestis Mediaevails SBML MML
ypn00680 Yersinia pestis Nepal516 SBML MML
ypp00680 Yersinia pestis Pestoides SBML MML
yps00680 Yersinia pseudotuberculosis IP32953 SBML MML
ypy00680 Yersinia pseudotuberculosis YPIII SBML MML
zmo00680 Zymomonas mobilis SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.