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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Pathway 00633: Trinitrotoluene degradation

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkOrganismSBMLMMLDownload Applet
abc00633 Acinetobacter baumannii ACICU SBML MML
aby00633 Acinetobacter baumannii AYE SBML MML
acb00633 Acinetobacter baumannii ATCC 17978 SBML MML
aci00633 Acinetobacter sp. ADP1 SBML MML
afu00633 Archaeoglobus fulgidus SBML MML
aha00633 Aeromonas hydrophila SBML MML
apa00633 Actinobacillus pleuropneumoniae AP76 (serotype 7) SBML MML
apj00633 Actinobacillus pleuropneumoniae JL03 (serotype 3) SBML MML
apl00633 Actinobacillus pleuropneumoniae L20 (serotype 5b) SBML MML
asa00633 Aeromonas salmonicida SBML MML
asu00633 Actinobacillus succinogenes SBML MML
atc00633 Agrobacterium tumefaciens C58 (Cereon) SBML MML
atu00633 Agrobacterium tumefaciens C58 SBML MML
ava00633 Anabaena variabilis SBML MML
azc00633 Azorhizobium caulinodans SBML MML
azo00633 Azoarcus sp. BH72 SBML MML
bam00633 Burkholderia cepacia SBML MML
bbr00633 Bordetella bronchiseptica SBML MML
bbt00633 Bradyrhizobium sp. BTAi1 SBML MML
bch00633 Burkholderia cenocepacia HI2424 SBML MML
bcm00633 Burkholderia cenocepacia MC0-3 SBML MML
bcn00633 Burkholderia cenocepacia AU1054 SBML MML
bid00633 Beijerinckia indica SBML MML
bpa00633 Bordetella parapertussis SBML MML
bpd00633 Burkholderia pseudomallei 668 SBML MML
bpe00633 Bordetella pertussis SBML MML
bph00633 Burkholderia phymatum SBML MML
bpt00633 Bordetella petrii SBML MML
bra00633 Bradyrhizobium sp. ORS278 SBML MML
bur00633 Burkholderia sp. 383 SBML MML
bvi00633 Burkholderia vietnamiensis SBML MML
bxe00633 Burkholderia xenovorans SBML MML
chy00633 Carboxydothermus hydrogenoformans SBML MML
cko00633 Citrobacter koseri ATCC BAA-895 SBML MML
cma00633 Caldivirga maquilingensis SBML MML
cno00633 Clostridium novyi SBML MML
cpb00633 Chlorobium phaeobacteroides BS1 SBML MML
cph00633 Chlorobium phaeobacteroides DSM 266 SBML MML
cps00633 Colwellia psychrerythraea SBML MML
csa00633 Chromohalobacter salexigens SBML MML
ctc00633 Clostridium tetani E88 SBML MML
cth00633 Clostridium thermocellum SBML MML
cvi00633 Chromobacterium violaceum SBML MML
dar00633 Dechloromonas aromatica SBML MML
dau00633 Candidatus Desulforudis audaxviator SBML MML
dcin00633 (Undocumented) SBML MML
dde00633 Desulfovibrio desulfuricans G20 SBML MML
dol00633 Candidatus Desulfococcus oleovorans SBML MML
dps00633 Desulfotalea psychrophila SBML MML
dptm00633 (Undocumented) SBML MML
dvl00633 Desulfovibrio vulgaris DP4 SBML MML
dvu00633 Desulfovibrio vulgaris Hildenborough SBML MML
eca00633 Erwinia carotovora SBML MML
ecc00633 Escherichia coli CFT073 (UPEC) SBML MML
ecd00633 Escherichia coli K-12 DH10B SBML MML
ece00633 Escherichia coli O157 EDL933 (EHEC) SBML MML
eci00633 Escherichia coli UTI89 (UPEC) SBML MML
ecj00633 Escherichia coli K-12 W3110 SBML MML
ecl00633 Escherichia coli ATCC 8739 SBML MML
ecm00633 Escherichia coli SECEC SBML MML
eco00633 Escherichia coli K-12 MG1655 SBML MML
ecp00633 Escherichia coli 536 (UPEC) SBML MML
ecs00633 Escherichia coli O157 Sakai (EHEC) SBML MML
ecv00633 Escherichia coli APEC O1 SBML MML
ecw00633 Escherichia coli E24377A SBML MML
ecx00633 Escherichia coli HS SBML MML
ent00633 Enterobacter sp. 638 SBML MML
eosa00633 Oryza sativa (rice) (EST) SBML MML
eosi00633 Oryza sativa indica (Indian rice) (EST) SBML MML
eosj00633 Oryza sativa japonica (Japanese rice) (EST) SBML MML
eppp00633 Physcomitrella patens subsp. patens (EST) SBML MML
esa00633 Enterobacter sakazakii SBML MML
estu00633 Solanum tuberosum (potato) (EST) SBML MML
eta00633 Erwinia tasmaniensis SBML MML
etae00633 Triticum aestivum (wheat) (EST) SBML MML
ezma00633 Zea mays (maize) (EST) SBML MML
fgr00633 Fusarium graminearum SBML MML
fma00633 Finegoldia magna SBML MML
fph00633 Francisella philomiragia SBML MML
fps00633 Flavobacterium psychrophilum SBML MML
fta00633 Francisella tularensis subsp. holarctica FTNF002-00 SBML MML
ftf00633 Francisella tularensis subsp. tularensis FSC 198 SBML MML
fth00633 Francisella tularensis subsp. holarctica OSU18 SBML MML
ftl00633 Francisella tularensis subsp. holarctica LVS SBML MML
ftm00633 Francisella tularensis subsp. mediasiatica FSC147 SBML MML
ftn00633 Francisella tularensis subsp. novicida U112 SBML MML
ftu00633 Francisella tularensis subsp. tularensis SCHU S4 SBML MML
ftw00633 Francisella tularensis subsp. tularensis WY96-3418 SBML MML
gbe00633 Granulobacter bethesdensis SBML MML
gfo00633 Gramella forsetii SBML MML
har00633 Herminiimonas arsenicoxydans SBML MML
hch00633 Hahella chejuensis SBML MML
hip00633 Haemophilus influenzae PittEE SBML MML
hiq00633 Haemophilus influenzae PittGG SBML MML
hsm00633 Haemophilus somnus 2336 SBML MML
kpn00633 Klebsiella pneumoniae SBML MML
lch00633 Leptothrix cholodnii SBML MML
mab00633 Mycobacterium abscessus ATCC 19977T SBML MML
mag00633 Magnetospirillum magneticum SBML MML
maq00633 Marinobacter aquaeolei SBML MML
mca00633 Methylococcus capsulatus SBML MML
mfa00633 Methylobacillus flagellatus SBML MML
mjl00633 Mycobacterium sp. JLS SBML MML
mlo00633 Mesorhizobium loti SBML MML
mmw00633 Marinomonas sp. MWYL1 SBML MML
mpt00633 Methylibium petroleiphilum SBML MML
msu00633 Mannheimia succiniciproducens SBML MML
mta00633 Moorella thermoacetica SBML MML
mva00633 Mycobacterium vanbaalenii SBML MML
ncr00633 Neurospora crassa SBML MML
nis00633 Nitratiruptor sp. SB155-2 SBML MML
pai00633 Pyrobaculum aerophilum SBML MML
pan00633 Podospora anserina SBML MML
pap00633 Pseudomonas aeruginosa PA7 SBML MML
par00633 Psychrobacter arcticum SBML MML
pas00633 Pyrobaculum arsenaticum SBML MML
pau00633 Pseudomonas aeruginosa UCBPP-PA14 SBML MML
pca00633 Pelobacter carbinolicus SBML MML
pcl00633 Pyrobaculum calidifontis SBML MML
pcr00633 Psychrobacter cryohalolentis SBML MML
pen00633 Pseudomonas entomophila SBML MML
pfl00633 Pseudomonas fluorescens Pf-5 SBML MML
pfo00633 Pseudomonas fluorescens Pf0-1 SBML MML
pha00633 Pseudoalteromonas haloplanktis SBML MML
pin00633 Psychromonas ingrahamii SBML MML
pis00633 Pyrobaculum islandicum SBML MML
plu00633 Photorhabdus luminescens SBML MML
pmy00633 Pseudomonas mendocina SBML MML
pna00633 Polaromonas naphthalenivorans SBML MML
pnu00633 Polynucleobacter sp. QLW-P1DMWA-1 SBML MML
ppd00633 Pelobacter propionicus SBML MML
ppf00633 Pseudomonas putida F1 SBML MML
ppg00633 Pseudomonas putida GB-1 SBML MML
ppr00633 Photobacterium profundum SBML MML
ppu00633 Pseudomonas putida KT2440 SBML MML
ppw00633 Pseudomonas putida W619 SBML MML
prw00633 Psychrobacter sp. PRwf-1 SBML MML
psb00633 Pseudomonas syringae pv. syringae B728a SBML MML
pst00633 Pseudomonas syringae pv. tomato DC3000 SBML MML
reh00633 Ralstonia eutropha H16 SBML MML
rfr00633 Rhodoferax ferrireducens SBML MML
rme00633 Ralstonia metallidurans SBML MML
rpa00633 Rhodopseudomonas palustris CGA009 SBML MML
rpb00633 Rhodopseudomonas palustris HaA2 SBML MML
rpc00633 Rhodopseudomonas palustris BisB18 SBML MML
rpd00633 Rhodopseudomonas palustris BisB5 SBML MML
rpe00633 Rhodopseudomonas palustris BisA53 SBML MML
rpt00633 Rhodopseudomonas palustris TIE-1 SBML MML
rsh00633 Rhodobacter sphaeroides ATCC 17029 SBML MML
rso00633 Ralstonia solanacearum SBML MML
rsp00633 Rhodobacter sphaeroides 2.4.1 SBML MML
rsq00633 Rhodobacter sphaeroides ATCC 17025 SBML MML
saq00633 Salinispora arenicola SBML MML
saz00633 Shewanella amazonensis SBML MML
sbc00633 Shigella boydii CDC 3083-94 SBML MML
sbl00633 Shewanella baltica OS155 SBML MML
sbm00633 Shewanella baltica OS185 SBML MML
sbn00633 Shewanella baltica OS195 SBML MML
sbo00633 Shigella boydii Sb227 SBML MML
sdn00633 Shewanella denitrificans SBML MML
sdy00633 Shigella dysenteriae SBML MML
sec00633 Salmonella enterica subsp. enterica serovar Choleraesuis SBML MML
ses00633 Salmonella enterica subsp. arizonae SBML MML
sfl00633 Shigella flexneri 301 (serotype 2a) SBML MML
sfr00633 Shewanella frigidimarina SBML MML
sfu00633 Syntrophobacter fumaroxidans SBML MML
sfv00633 Shigella flexneri 8401 (serotype 5b) SBML MML
sfx00633 Shigella flexneri 2457T (serotype 2a) SBML MML
she00633 Shewanella sp. MR-4 SBML MML
shl00633 Shewanella halifaxensis SBML MML
shm00633 Shewanella sp. MR-7 SBML MML
shn00633 Shewanella sp. ANA-3 SBML MML
shw00633 Shewanella sp. W3-18-1 SBML MML
slo00633 Shewanella loihica SBML MML
son00633 Shewanella oneidensis SBML MML
spc00633 Shewanella putrefaciens SBML MML
spe00633 Serratia proteamaculans SBML MML
spl00633 Shewanella pealeana SBML MML
spq00633 Salmonella enterica subsp. enterica serovar Paratyphi B SBML MML
spt00633 Salmonella enterica subsp. enterica serovar Paratyphi A SBML MML
sse00633 Shewanella sediminis SBML MML
ssn00633 Shigella sonnei SBML MML
stm00633 Salmonella typhimurium LT2 SBML MML
stt00633 Salmonella enterica subsp. enterica serovar Typhi Ty2 SBML MML
sty00633 Salmonella enterica subsp. enterica serovar Typhi CT18 SBML MML
swd00633 Shewanella woodyi ATCC 51908 SBML MML
swo00633 Syntrophomonas wolfei SBML MML
syc00633 Synechococcus elongatus PCC6301 SBML MML
syf00633 Synechococcus elongatus PCC7942 SBML MML
tcx00633 Thiomicrospira crunogena SBML MML
tne00633 Thermoproteus neutrophilus SBML MML
vch00633 Vibrio cholerae O1 SBML MML
vco00633 Vibrio cholerae O395 SBML MML
vfi00633 Vibrio fischeri SBML MML
vha00633 Vibrio harveyi SBML MML
vpa00633 Vibrio parahaemolyticus SBML MML
vvu00633 Vibrio vulnificus CMCP6 SBML MML
vvy00633 Vibrio vulnificus YJ016 SBML MML
xau00633 Xanthobacter autotrophicus SBML MML
yen00633 Yersinia enterocolitica SBML MML
ypa00633 Yersinia pestis Antiqua SBML MML
ype00633 Yersinia pestis CO92 SBML MML
ypg00633 Yersinia pestis Angola SBML MML
ypi00633 Yersinia pseudotuberculosis IP31758 SBML MML
ypk00633 Yersinia pestis KIM SBML MML
ypm00633 Yersinia pestis Mediaevails SBML MML
ypn00633 Yersinia pestis Nepal516 SBML MML
ypp00633 Yersinia pestis Pestoides SBML MML
yps00633 Yersinia pseudotuberculosis IP32953 SBML MML
ypy00633 Yersinia pseudotuberculosis YPIII SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.