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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Pathway 00625: (Undocumented)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkOrganismSBMLMMLDownload Applet
aga00625 Anopheles gambiae (mosquito) SBML MML
amt00625 Alkaliphilus metalliredigens SBML MML
aoe00625 Alkaliphilus oremlandii SBML MML
azc00625 Azorhizobium caulinodans SBML MML
azo00625 Azoarcus sp. BH72 SBML MML
bbt00625 Bradyrhizobium sp. BTAi1 SBML MML
bid00625 Beijerinckia indica SBML MML
bja00625 Bradyrhizobium japonicum SBML MML
bph00625 Burkholderia phymatum SBML MML
bpt00625 Bordetella petrii SBML MML
bra00625 Bradyrhizobium sp. ORS278 SBML MML
bta00625 Bos taurus (cow) SBML MML
bvi00625 Burkholderia vietnamiensis SBML MML
bxe00625 Burkholderia xenovorans SBML MML
cac00625 Clostridium acetobutylicum SBML MML
cau00625 Chloroflexus aurantiacus SBML MML
cba00625 Clostridium botulinum A ATCC 19397 SBML MML
cbb00625 Clostridium botulinum B1 Okra SBML MML
cbe00625 Clostridium beijerinckii SBML MML
cbf00625 Clostridium botulinum F Langeland SBML MML
cbh00625 Clostridium botulinum A Hall SBML MML
cbl00625 Clostridium botulinum A3 Loch Maree SBML MML
cbo00625 Clostridium botulinum A ATCC 3502 SBML MML
cfa00625 Canis familiaris (dog) SBML MML
ckl00625 Clostridium kluyveri DSM 555 SBML MML
cph00625 Chlorobium phaeobacteroides DSM 266 SBML MML
csc00625 Caldicellulosiruptor saccharolyticus SBML MML
cte00625 Chlorobaculum tepidum SBML MML
cya00625 Cyanobacteria Yellowstone A-Prime SBML MML
cyb00625 Cyanobacteria Yellowstone B-Prime SBML MML
dar00625 Dechloromonas aromatica SBML MML
dcin00625 (Undocumented) SBML MML
decb00625 (Undocumented) SBML MML
dme00625 Drosophila melanogaster (fruit fly) SBML MML
dpop00625 (Undocumented) SBML MML
dptm00625 (Undocumented) SBML MML
dsy00625 Desulfitobacterium hafniense Y51 SBML MML
dvl00625 Desulfovibrio vulgaris DP4 SBML MML
dvu00625 Desulfovibrio vulgaris Hildenborough SBML MML
eath00625 Arabidopsis thaliana (thale cress) (EST) SBML MML
eca00625 Erwinia carotovora SBML MML
ecan00625 Capsicum annuum (chile pepper) (EST) SBML MML
eghi00625 Gossypium hirsutum (upland cotton) (EST) SBML MML
egma00625 Glycine max (soybean) (EST) SBML MML
egra00625 Gossypium raimondii (EST) SBML MML
ehan00625 Helianthus annuus (sunflower) (EST) SBML MML
ehvu00625 Hordeum vulgare (barley) (EST) SBML MML
eini00625 Ipomoea nil (Japanese morning glory) (EST) SBML MML
elja00625 Lotus japonicus (lotus) (EST) SBML MML
elst00625 Lactuca sativa (lettuce) (EST) SBML MML
emtr00625 Medicago truncatula (barrel medic) (EST) SBML MML
enbe00625 Nicotiana benthamiana (EST) SBML MML
enta00625 Nicotiana tabacum (tobacco) (EST) SBML MML
eosa00625 Oryza sativa (rice) (EST) SBML MML
eosi00625 Oryza sativa indica (Indian rice) (EST) SBML MML
eosj00625 Oryza sativa japonica (Japanese rice) (EST) SBML MML
epgl00625 Picea glauca (white spruce) (EST) SBML MML
epop00625 Populus trichocarpa (black cottonwood) (EST) SBML MML
eppi00625 Pinus pinaster (maritime pine) (EST) SBML MML
eppp00625 Physcomitrella patens subsp. patens (EST) SBML MML
epps00625 Prunus persica (peach) (EST) SBML MML
epsi00625 Picea sitchensis (sitka spruce) (EST) SBML MML
epta00625 Pinus taeda (loblolly pine) (EST) SBML MML
esbi00625 Sorghum bicolor (sorghum) (EST) SBML MML
esof00625 Saccharum officinarum (sugarcane) (EST) SBML MML
espp00625 (Undocumented) SBML MML
estu00625 Solanum tuberosum (potato) (EST) SBML MML
etae00625 Triticum aestivum (wheat) (EST) SBML MML
evvi00625 Vitis vinifera (wine grape) (EST) SBML MML
ezma00625 Zea mays (maize) (EST) SBML MML
fgr00625 Fusarium graminearum SBML MML
fnu00625 Fusobacterium nucleatum SBML MML
fra00625 Frankia sp. CcI3 SBML MML
fre00625 Frankia sp. EAN1pec SBML MML
gdi00625 Gluconacetobacter diazotrophicus PAl 5 (Brazil) SBML MML
gga00625 Gallus gallus (chicken) SBML MML
gme00625 Geobacter metallireducens SBML MML
gsu00625 Geobacter sulfurreducens SBML MML
hsa00625 Homo sapiens (human) SBML MML
lbc00625 Laccaria bicolor SBML MML
lch00625 Leptothrix cholodnii SBML MML
mab00625 Mycobacterium abscessus ATCC 19977T SBML MML
mae00625 Methanococcus aeolicus SBML MML
mav00625 Mycobacterium avium 104 SBML MML
mba00625 Methanosarcina barkeri SBML MML
mbn00625 Candidatus Methanoregula boonei SBML MML
mbo00625 Mycobacterium bovis AF2122/97 SBML MML
mbu00625 Methanococcoides burtonii SBML MML
mcc00625 Macaca mulatta (rhesus monkey) SBML MML
mdo00625 Monodelphis domestica (opossum) SBML MML
met00625 Methylobacterium sp. 4-46 SBML MML
mgr00625 Magnaporthe grisea SBML MML
mhu00625 Methanospirillum hungatei SBML MML
mja00625 Methanococcus jannaschii SBML MML
mka00625 Methanopyrus kandleri SBML MML
mlo00625 Mesorhizobium loti SBML MML
mma00625 Methanosarcina mazei SBML MML
mmi00625 Mycobacterium marinum M SBML MML
mmp00625 Methanococcus maripaludis S2 SBML MML
mmu00625 Mus musculus (mouse) SBML MML
mmx00625 Methanococcus maripaludis C6 SBML MML
mmz00625 Methanococcus maripaludis C7 SBML MML
mpt00625 Methylibium petroleiphilum SBML MML
msi00625 Methanobrevibacter smithii ATCC 35061 SBML MML
msm00625 Mycobacterium smegmatis SBML MML
mst00625 Methanosphaera stadtmanae SBML MML
mtc00625 Mycobacterium tuberculosis CDC1551 SBML MML
mtf00625 Mycobacterium tuberculosis F11 SBML MML
mth00625 Methanobacterium thermoautotrophicum SBML MML
mvn00625 Methanococcus vannielii SBML MML
ncr00625 Neurospora crassa SBML MML
nve00625 Nematostella vectensis (sea anemone) SBML MML
oaa00625 Ornithorhynchus anatinus (platypus) SBML MML
pan00625 Podospora anserina SBML MML
pca00625 Pelobacter carbinolicus SBML MML
pna00625 Polaromonas naphthalenivorans SBML MML
ppd00625 Pelobacter propionicus SBML MML
ppp00625 Physcomitrella patens subsp. patens SBML MML
psa00625 Pseudomonas stutzeri SBML MML
ptr00625 Pan troglodytes (chimpanzee) SBML MML
rba00625 Rhodopirellula baltica SBML MML
rci00625 Uncultured methanogenic archaeon RC-I SBML MML
rde00625 Roseobacter denitrificans SBML MML
rec00625 Rhizobium etli CIAT 652 SBML MML
ret00625 Rhizobium etli CFN 42 SBML MML
rle00625 Rhizobium leguminosarum SBML MML
rno00625 Rattus norvegicus (rat) SBML MML
rpa00625 Rhodopseudomonas palustris CGA009 SBML MML
rpb00625 Rhodopseudomonas palustris HaA2 SBML MML
rpe00625 Rhodopseudomonas palustris BisA53 SBML MML
rpt00625 Rhodopseudomonas palustris TIE-1 SBML MML
rso00625 Ralstonia solanacearum SBML MML
rsp00625 Rhodobacter sphaeroides 2.4.1 SBML MML
rsq00625 Rhodobacter sphaeroides ATCC 17025 SBML MML
sgr00625 Streptomyces griseus SBML MML
smd00625 Sinorhizobium medicae SBML MML
sme00625 Sinorhizobium meliloti SBML MML
spu00625 Strongylocentrotus purpuratus (purple sea urchin) SBML MML
swi00625 Sphingomonas wittichii SBML MML
ter00625 Trichodesmium erythraeum SBML MML
uma00625 Ustilago maydis SBML MML
wsu00625 Wolinella succinogenes SBML MML
xau00625 Xanthobacter autotrophicus SBML MML
xla00625 Xenopus laevis (African clawed frog) SBML MML
xtr00625 Xenopus tropicalis (western clawed frog) SBML MML
yli00625 Yarrowia lipolytica SBML MML
zmo00625 Zymomonas mobilis SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.