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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Pathway 00623: 2,4-Dichlorobenzoate degradation

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkOrganismSBMLMMLDownload Applet
aau00623 Arthrobacter aurescens SBML MML
abc00623 Acinetobacter baumannii ACICU SBML MML
abm00623 Acinetobacter baumannii SDF SBML MML
aby00623 Acinetobacter baumannii AYE SBML MML
acb00623 Acinetobacter baumannii ATCC 17978 SBML MML
aci00623 Acinetobacter sp. ADP1 SBML MML
acr00623 Acidiphilium cryptum JF-5 SBML MML
afm00623 Aspergillus fumigatus SBML MML
amr00623 Acaryochloris marina SBML MML
ang00623 Aspergillus niger SBML MML
art00623 Arthrobacter sp. FB24 SBML MML
asa00623 Aeromonas salmonicida SBML MML
atc00623 Agrobacterium tumefaciens C58 (Cereon) SBML MML
atu00623 Agrobacterium tumefaciens C58 SBML MML
ava00623 Anabaena variabilis SBML MML
azc00623 Azorhizobium caulinodans SBML MML
azo00623 Azoarcus sp. BH72 SBML MML
bac00623 Burkholderia ambifaria MC40-6 SBML MML
bam00623 Burkholderia cepacia SBML MML
bav00623 Bordetella avium SBML MML
bbr00623 Bordetella bronchiseptica SBML MML
bbt00623 Bradyrhizobium sp. BTAi1 SBML MML
bch00623 Burkholderia cenocepacia HI2424 SBML MML
bcm00623 Burkholderia cenocepacia MC0-3 SBML MML
bcn00623 Burkholderia cenocepacia AU1054 SBML MML
bcs00623 Brucella canis SBML MML
bcz00623 Bacillus cereus ZK SBML MML
bja00623 Bradyrhizobium japonicum SBML MML
bma00623 Burkholderia mallei ATCC 23344 SBML MML
bmc00623 Brucella abortus S19 SBML MML
bme00623 Brucella melitensis 16M SBML MML
bml00623 Burkholderia mallei NCTC 10229 SBML MML
bmn00623 Burkholderia mallei NCTC 10247 SBML MML
bms00623 Brucella suis 1330 SBML MML
bmu00623 Burkholderia multivorans ATCC 17616 (JGI) SBML MML
bmv00623 Burkholderia mallei SAVP1 SBML MML
bov00623 Brucella ovis SBML MML
bpa00623 Bordetella parapertussis SBML MML
bpd00623 Burkholderia pseudomallei 668 SBML MML
bpe00623 Bordetella pertussis SBML MML
bph00623 Burkholderia phymatum SBML MML
bpl00623 Burkholderia pseudomallei 1106a SBML MML
bpm00623 Burkholderia pseudomallei 1710b SBML MML
bps00623 Burkholderia pseudomallei K96243 SBML MML
bpt00623 Bordetella petrii SBML MML
bra00623 Bradyrhizobium sp. ORS278 SBML MML
bte00623 Burkholderia thailandensis SBML MML
bur00623 Burkholderia sp. 383 SBML MML
bvi00623 Burkholderia vietnamiensis SBML MML
bxe00623 Burkholderia xenovorans SBML MML
cak00623 Caulobacter sp. K31 SBML MML
ccr00623 Caulobacter crescentus CB15 SBML MML
cef00623 Corynebacterium efficiens SBML MML
cfa00623 Canis familiaris (dog) SBML MML
cgb00623 Corynebacterium glutamicum ATCC 13032 (Bielefeld) SBML MML
cgl00623 Corynebacterium glutamicum ATCC 13032 (Kyowa Hakko) SBML MML
cgt00623 Corynebacterium glutamicum R SBML MML
csa00623 Chromohalobacter salexigens SBML MML
cvi00623 Chromobacterium violaceum SBML MML
dac00623 Delftia acidovorans SBML MML
decb00623 (Undocumented) SBML MML
dfru00623 Fugu rubripes (Japanese puffer fish) SBML MML
dge00623 Deinococcus geothermalis SBML MML
dha00623 Debaryomyces hansenii SBML MML
dola00623 Oryzias latipes (Japanese medaka) SBML MML
dsh00623 Dinoroseobacter shibae SBML MML
egma00623 Glycine max (soybean) (EST) SBML MML
ehvu00623 Hordeum vulgare (barley) (EST) SBML MML
emtr00623 Medicago truncatula (barrel medic) (EST) SBML MML
eosa00623 Oryza sativa (rice) (EST) SBML MML
eosj00623 Oryza sativa japonica (Japanese rice) (EST) SBML MML
eppp00623 Physcomitrella patens subsp. patens (EST) SBML MML
epsi00623 Picea sitchensis (sitka spruce) (EST) SBML MML
eptp00623 Populus tremula (European aspen) (EST) SBML MML
esof00623 Saccharum officinarum (sugarcane) (EST) SBML MML
estu00623 Solanum tuberosum (potato) (EST) SBML MML
etae00623 Triticum aestivum (wheat) (EST) SBML MML
evvi00623 Vitis vinifera (wine grape) (EST) SBML MML
fgr00623 Fusarium graminearum SBML MML
fph00623 Francisella philomiragia SBML MML
ftm00623 Francisella tularensis subsp. mediasiatica FSC147 SBML MML
gbe00623 Granulobacter bethesdensis SBML MML
gdi00623 Gluconacetobacter diazotrophicus PAl 5 (Brazil) SBML MML
gfo00623 Gramella forsetii SBML MML
har00623 Herminiimonas arsenicoxydans SBML MML
jan00623 Jannaschia sp. CCS1 SBML MML
kpn00623 Klebsiella pneumoniae SBML MML
kra00623 Kineococcus radiotolerans SBML MML
lbc00623 Laccaria bicolor SBML MML
lbf00623 Leptospira biflexa serovar Patoc Patoc 1 (Ames) SBML MML
lbi00623 Leptospira biflexa serovar Patoc Patoc 1 (Paris) SBML MML
lch00623 Leptothrix cholodnii SBML MML
mab00623 Mycobacterium abscessus ATCC 19977T SBML MML
mag00623 Magnetospirillum magneticum SBML MML
mav00623 Mycobacterium avium 104 SBML MML
mes00623 Mesorhizobium sp. BNC1 SBML MML
met00623 Methylobacterium sp. 4-46 SBML MML
mex00623 Methylobacterium extorquens SBML MML
mjl00623 Mycobacterium sp. JLS SBML MML
mlo00623 Mesorhizobium loti SBML MML
mms00623 Minibacterium massiliensis SBML MML
mmw00623 Marinomonas sp. MWYL1 SBML MML
mpa00623 Mycobacterium avium paratuberculosis SBML MML
mrd00623 Methylobacterium radiotolerans SBML MML
msm00623 Mycobacterium smegmatis SBML MML
mva00623 Mycobacterium vanbaalenii SBML MML
nar00623 Novosphingobium aromaticivorans SBML MML
ncr00623 Neurospora crassa SBML MML
nph00623 Natronomonas pharaonis SBML MML
oan00623 Ochrobactrum anthropi SBML MML
pae00623 Pseudomonas aeruginosa PAO1 SBML MML
pan00623 Podospora anserina SBML MML
pap00623 Pseudomonas aeruginosa PA7 SBML MML
pat00623 Pseudoalteromonas atlantica SBML MML
pau00623 Pseudomonas aeruginosa UCBPP-PA14 SBML MML
pde00623 Paracoccus denitrificans SBML MML
pen00623 Pseudomonas entomophila SBML MML
pfl00623 Pseudomonas fluorescens Pf-5 SBML MML
pfo00623 Pseudomonas fluorescens Pf0-1 SBML MML
pna00623 Polaromonas naphthalenivorans SBML MML
pol00623 Polaromonas sp. JS666 SBML MML
ppf00623 Pseudomonas putida F1 SBML MML
ppg00623 Pseudomonas putida GB-1 SBML MML
ppu00623 Pseudomonas putida KT2440 SBML MML
ppw00623 Pseudomonas putida W619 SBML MML
psa00623 Pseudomonas stutzeri SBML MML
psb00623 Pseudomonas syringae pv. syringae B728a SBML MML
psp00623 Pseudomonas syringae pv. phaseolicola 1448A SBML MML
pst00623 Pseudomonas syringae pv. tomato DC3000 SBML MML
rba00623 Rhodopirellula baltica SBML MML
rde00623 Roseobacter denitrificans SBML MML
rec00623 Rhizobium etli CIAT 652 SBML MML
reh00623 Ralstonia eutropha H16 SBML MML
ret00623 Rhizobium etli CFN 42 SBML MML
reu00623 Ralstonia eutropha JMP134 SBML MML
rfr00623 Rhodoferax ferrireducens SBML MML
rha00623 Rhodococcus sp. RHA1 SBML MML
rle00623 Rhizobium leguminosarum SBML MML
rme00623 Ralstonia metallidurans SBML MML
rpa00623 Rhodopseudomonas palustris CGA009 SBML MML
rpb00623 Rhodopseudomonas palustris HaA2 SBML MML
rpd00623 Rhodopseudomonas palustris BisB5 SBML MML
rpe00623 Rhodopseudomonas palustris BisA53 SBML MML
rpt00623 Rhodopseudomonas palustris TIE-1 SBML MML
rsa00623 Renibacterium salmoninarum SBML MML
rso00623 Ralstonia solanacearum SBML MML
rxy00623 Rubrobacter xylanophilus SBML MML
saq00623 Salinispora arenicola SBML MML
scl00623 Sorangium cellulosum SBML MML
sco00623 Streptomyces coelicolor SBML MML
sen00623 Saccharopolyspora erythraea SBML MML
shl00623 Shewanella halifaxensis SBML MML
sil00623 Ruegeria pomeroyi SBML MML
sit00623 Silicibacter sp. TM1040 SBML MML
sma00623 Streptomyces avermitilis SBML MML
smd00623 Sinorhizobium medicae SBML MML
sme00623 Sinorhizobium meliloti SBML MML
spe00623 Serratia proteamaculans SBML MML
spl00623 Shewanella pealeana SBML MML
spo00623 Schizosaccharomyces pombe SBML MML
sus00623 Solibacter usitatus SBML MML
swi00623 Sphingomonas wittichii SBML MML
vei00623 Verminephrobacter eiseniae SBML MML
vha00623 Vibrio harveyi SBML MML
xac00623 Xanthomonas axonopodis SBML MML
xau00623 Xanthobacter autotrophicus SBML MML
xcb00623 Xanthomonas campestris pv. campestris 8004 SBML MML
xcc00623 Xanthomonas campestris pv. campestris ATCC 33913 SBML MML
xcv00623 Xanthomonas campestris pv. vesicatoria SBML MML
xom00623 Xanthomonas oryzae MAFF311018 SBML MML
xoo00623 Xanthomonas oryzae KACC10331 SBML MML
zmo00623 Zymomonas mobilis SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.