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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Pathway 00622: Toluene and xylene degradation

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkOrganismSBMLMMLDownload Applet
aau00622 Arthrobacter aurescens SBML MML
aba00622 Acidobacteria bacterium SBML MML
abc00622 Acinetobacter baumannii ACICU SBML MML
abm00622 Acinetobacter baumannii SDF SBML MML
abo00622 Alcanivorax borkumensis SBML MML
aby00622 Acinetobacter baumannii AYE SBML MML
acb00622 Acinetobacter baumannii ATCC 17978 SBML MML
aci00622 Acinetobacter sp. ADP1 SBML MML
aeh00622 Alkalilimnicola ehrlichei SBML MML
afm00622 Aspergillus fumigatus SBML MML
ajs00622 Acidovorax sp. JS42 SBML MML
ang00622 Aspergillus niger SBML MML
art00622 Arthrobacter sp. FB24 SBML MML
atc00622 Agrobacterium tumefaciens C58 (Cereon) SBML MML
atu00622 Agrobacterium tumefaciens C58 SBML MML
azc00622 Azorhizobium caulinodans SBML MML
azo00622 Azoarcus sp. BH72 SBML MML
baa00622 Bacillus anthracis A2012 SBML MML
bac00622 Burkholderia ambifaria MC40-6 SBML MML
bam00622 Burkholderia cepacia SBML MML
ban00622 Bacillus anthracis Ames SBML MML
bat00622 Bacillus anthracis Sterne SBML MML
bav00622 Bordetella avium SBML MML
bay00622 Bacillus amyloliquefaciens SBML MML
bba00622 Bdellovibrio bacteriovorus SBML MML
bbt00622 Bradyrhizobium sp. BTAi1 SBML MML
bca00622 Bacillus cereus ATCC 10987 SBML MML
bch00622 Burkholderia cenocepacia HI2424 SBML MML
bcl00622 Bacillus clausii SBML MML
bcm00622 Burkholderia cenocepacia MC0-3 SBML MML
bcn00622 Burkholderia cenocepacia AU1054 SBML MML
bcs00622 Brucella canis SBML MML
bcz00622 Bacillus cereus ZK SBML MML
bha00622 Bacillus halodurans SBML MML
bid00622 Beijerinckia indica SBML MML
bja00622 Bradyrhizobium japonicum SBML MML
bma00622 Burkholderia mallei ATCC 23344 SBML MML
bmb00622 Brucella abortus 9-941 SBML MML
bmc00622 Brucella abortus S19 SBML MML
bme00622 Brucella melitensis 16M SBML MML
bmf00622 Brucella melitensis biovar Abortus SBML MML
bml00622 Burkholderia mallei NCTC 10229 SBML MML
bmn00622 Burkholderia mallei NCTC 10247 SBML MML
bms00622 Brucella suis 1330 SBML MML
bmt00622 Brucella suis ATCC 23445 SBML MML
bmu00622 Burkholderia multivorans ATCC 17616 (JGI) SBML MML
bmv00622 Burkholderia mallei SAVP1 SBML MML
bov00622 Brucella ovis SBML MML
bpd00622 Burkholderia pseudomallei 668 SBML MML
bph00622 Burkholderia phymatum SBML MML
bpl00622 Burkholderia pseudomallei 1106a SBML MML
bpm00622 Burkholderia pseudomallei 1710b SBML MML
bps00622 Burkholderia pseudomallei K96243 SBML MML
bpt00622 Bordetella petrii SBML MML
bpu00622 Bacillus pumilus SBML MML
bra00622 Bradyrhizobium sp. ORS278 SBML MML
bte00622 Burkholderia thailandensis SBML MML
btk00622 Bacillus thuringiensis 97-27 SBML MML
btl00622 Bacillus thuringiensis Al Hakam SBML MML
bur00622 Burkholderia sp. 383 SBML MML
bvi00622 Burkholderia vietnamiensis SBML MML
bwe00622 Bacillus weihenstephanensis SBML MML
bxe00622 Burkholderia xenovorans SBML MML
cau00622 Chloroflexus aurantiacus SBML MML
ccr00622 Caulobacter crescentus CB15 SBML MML
cgb00622 Corynebacterium glutamicum ATCC 13032 (Bielefeld) SBML MML
cgl00622 Corynebacterium glutamicum ATCC 13032 (Kyowa Hakko) SBML MML
cgt00622 Corynebacterium glutamicum R SBML MML
csa00622 Chromohalobacter salexigens SBML MML
dac00622 Delftia acidovorans SBML MML
dar00622 Dechloromonas aromatica SBML MML
dde00622 Desulfovibrio desulfuricans G20 SBML MML
dge00622 Deinococcus geothermalis SBML MML
dha00622 Debaryomyces hansenii SBML MML
dola00622 Oryzias latipes (Japanese medaka) SBML MML
dpop00622 (Undocumented) SBML MML
dptm00622 (Undocumented) SBML MML
dsh00622 Dinoroseobacter shibae SBML MML
dvvi00622 (Undocumented) SBML MML
eba00622 Aromatoleum aromaticum EbN1 SBML MML
eca00622 Erwinia carotovora SBML MML
ece00622 Escherichia coli O157 EDL933 (EHEC) SBML MML
ecj00622 Escherichia coli K-12 W3110 SBML MML
ecl00622 Escherichia coli ATCC 8739 SBML MML
ecm00622 Escherichia coli SECEC SBML MML
eco00622 Escherichia coli K-12 MG1655 SBML MML
ecs00622 Escherichia coli O157 Sakai (EHEC) SBML MML
ecw00622 Escherichia coli E24377A SBML MML
ecx00622 Escherichia coli HS SBML MML
emte00622 Molgula tectiformis (EST) SBML MML
emtr00622 Medicago truncatula (barrel medic) (EST) SBML MML
ent00622 Enterobacter sp. 638 SBML MML
eosa00622 Oryza sativa (rice) (EST) SBML MML
eosj00622 Oryza sativa japonica (Japanese rice) (EST) SBML MML
epgl00622 Picea glauca (white spruce) (EST) SBML MML
epsi00622 Picea sitchensis (sitka spruce) (EST) SBML MML
epta00622 Pinus taeda (loblolly pine) (EST) SBML MML
eptp00622 Populus tremula (European aspen) (EST) SBML MML
esof00622 Saccharum officinarum (sugarcane) (EST) SBML MML
eta00622 Erwinia tasmaniensis SBML MML
etae00622 Triticum aestivum (wheat) (EST) SBML MML
ezma00622 Zea mays (maize) (EST) SBML MML
fal00622 Frankia alni SBML MML
fgr00622 Fusarium graminearum SBML MML
fre00622 Frankia sp. EAN1pec SBML MML
ftf00622 Francisella tularensis subsp. tularensis FSC 198 SBML MML
fth00622 Francisella tularensis subsp. holarctica OSU18 SBML MML
ftl00622 Francisella tularensis subsp. holarctica LVS SBML MML
ftn00622 Francisella tularensis subsp. novicida U112 SBML MML
ftu00622 Francisella tularensis subsp. tularensis SCHU S4 SBML MML
ftw00622 Francisella tularensis subsp. tularensis WY96-3418 SBML MML
glo00622 Geobacter lovleyi SBML MML
hne00622 Hyphomonas neptunium SBML MML
hso00622 Haemophilus somnus 129PT SBML MML
jan00622 Jannaschia sp. CCS1 SBML MML
kpn00622 Klebsiella pneumoniae SBML MML
krh00622 Kocuria rhizophila SBML MML
lbc00622 Laccaria bicolor SBML MML
lbr00622 Lactobacillus brevis SBML MML
lch00622 Leptothrix cholodnii SBML MML
lfe00622 Lactobacillus fermentum SBML MML
lpc00622 Legionella pneumophila Corby SBML MML
lpf00622 Legionella pneumophila Lens SBML MML
lpl00622 Lactobacillus plantarum WCFS1 SBML MML
lpn00622 Legionella pneumophila Philadelphia 1 SBML MML
lpp00622 Legionella pneumophila Paris SBML MML
lre00622 Lactobacillus reuteri DSM 20016 SBML MML
lsa00622 Lactobacillus sakei SBML MML
lsl00622 Lactobacillus salivarius SBML MML
mab00622 Mycobacterium abscessus ATCC 19977T SBML MML
mav00622 Mycobacterium avium 104 SBML MML
mbb00622 Mycobacterium bovis BCG Pasteur 1173P2 SBML MML
mbo00622 Mycobacterium bovis AF2122/97 SBML MML
mbu00622 Methanococcoides burtonii SBML MML
mes00622 Mesorhizobium sp. BNC1 SBML MML
met00622 Methylobacterium sp. 4-46 SBML MML
mex00622 Methylobacterium extorquens SBML MML
mfa00622 Methylobacillus flagellatus SBML MML
mgi00622 Mycobacterium gilvum SBML MML
mgr00622 Magnaporthe grisea SBML MML
mjl00622 Mycobacterium sp. JLS SBML MML
mkm00622 Mycobacterium sp. KMS SBML MML
mlo00622 Mesorhizobium loti SBML MML
mmc00622 Mycobacterium sp. MCS SBML MML
mmi00622 Mycobacterium marinum M SBML MML
mmr00622 Maricaulis maris SBML MML
mms00622 Minibacterium massiliensis SBML MML
mmw00622 Marinomonas sp. MWYL1 SBML MML
mpa00622 Mycobacterium avium paratuberculosis SBML MML
mpt00622 Methylibium petroleiphilum SBML MML
mrd00622 Methylobacterium radiotolerans SBML MML
mse00622 Metallosphaera sedula SBML MML
msm00622 Mycobacterium smegmatis SBML MML
mta00622 Moorella thermoacetica SBML MML
mtc00622 Mycobacterium tuberculosis CDC1551 SBML MML
mtf00622 Mycobacterium tuberculosis F11 SBML MML
mtu00622 Mycobacterium tuberculosis H37Rv SBML MML
mul00622 Mycobacterium ulcerans SBML MML
mva00622 Mycobacterium vanbaalenii SBML MML
mxa00622 Myxococcus xanthus SBML MML
nar00622 Novosphingobium aromaticivorans SBML MML
nca00622 Nocardioides sp. JS614 SBML MML
ncr00622 Neurospora crassa SBML MML
neu00622 Nitrosomonas europaea SBML MML
nfa00622 Nocardia farcinica SBML MML
nha00622 Nitrobacter hamburgensis SBML MML
nmn00622 Neisseria meningitidis 053442 (serogroup C) SBML MML
nmu00622 Nitrosospira multiformis SBML MML
noc00622 Nitrosococcus oceani SBML MML
nwi00622 Nitrobacter winogradskyi SBML MML
oan00622 Ochrobactrum anthropi SBML MML
pae00622 Pseudomonas aeruginosa PAO1 SBML MML
pan00622 Podospora anserina SBML MML
pap00622 Pseudomonas aeruginosa PA7 SBML MML
par00622 Psychrobacter arcticum SBML MML
pat00622 Pseudoalteromonas atlantica SBML MML
pau00622 Pseudomonas aeruginosa UCBPP-PA14 SBML MML
pcr00622 Psychrobacter cryohalolentis SBML MML
pde00622 Paracoccus denitrificans SBML MML
pen00622 Pseudomonas entomophila SBML MML
pfl00622 Pseudomonas fluorescens Pf-5 SBML MML
pfo00622 Pseudomonas fluorescens Pf0-1 SBML MML
pha00622 Pseudoalteromonas haloplanktis SBML MML
pic00622 Pichia stipitis SBML MML
pla00622 Parvibaculum lavamentivorans SBML MML
plu00622 Photorhabdus luminescens SBML MML
pna00622 Polaromonas naphthalenivorans SBML MML
pne00622 Polynucleobacter necessarius SBML MML
pnu00622 Polynucleobacter sp. QLW-P1DMWA-1 SBML MML
pol00622 Polaromonas sp. JS666 SBML MML
ppf00622 Pseudomonas putida F1 SBML MML
ppg00622 Pseudomonas putida GB-1 SBML MML
ppu00622 Pseudomonas putida KT2440 SBML MML
ppw00622 Pseudomonas putida W619 SBML MML
psa00622 Pseudomonas stutzeri SBML MML
psb00622 Pseudomonas syringae pv. syringae B728a SBML MML
psp00622 Pseudomonas syringae pv. phaseolicola 1448A SBML MML
pst00622 Pseudomonas syringae pv. tomato DC3000 SBML MML
rba00622 Rhodopirellula baltica SBML MML
rca00622 Roseiflexus castenholzii DSM13941 SBML MML
rde00622 Roseobacter denitrificans SBML MML
rec00622 Rhizobium etli CIAT 652 SBML MML
reh00622 Ralstonia eutropha H16 SBML MML
ret00622 Rhizobium etli CFN 42 SBML MML
reu00622 Ralstonia eutropha JMP134 SBML MML
rha00622 Rhodococcus sp. RHA1 SBML MML
rle00622 Rhizobium leguminosarum SBML MML
rme00622 Ralstonia metallidurans SBML MML
rpa00622 Rhodopseudomonas palustris CGA009 SBML MML
rpb00622 Rhodopseudomonas palustris HaA2 SBML MML
rpc00622 Rhodopseudomonas palustris BisB18 SBML MML
rpd00622 Rhodopseudomonas palustris BisB5 SBML MML
rpe00622 Rhodopseudomonas palustris BisA53 SBML MML
rpt00622 Rhodopseudomonas palustris TIE-1 SBML MML
rrs00622 Roseiflexus sp. RS-1 SBML MML
rru00622 Rhodospirillum rubrum SBML MML
rsa00622 Renibacterium salmoninarum SBML MML
rso00622 Ralstonia solanacearum SBML MML
rsp00622 Rhodobacter sphaeroides 2.4.1 SBML MML
rsq00622 Rhodobacter sphaeroides ATCC 17025 SBML MML
rxy00622 Rubrobacter xylanophilus SBML MML
saa00622 Staphylococcus aureus USA300 SBML MML
sab00622 Staphylococcus aureus RF122 SBML MML
sae00622 Staphylococcus aureus Newman SBML MML
sah00622 Staphylococcus aureus JH1 SBML MML
sai00622 Sulfolobus acidocaldarius SBML MML
saj00622 Staphylococcus aureus JH9 SBML MML
saq00622 Salinispora arenicola SBML MML
saw00622 Staphylococcus aureus Mu3 SBML MML
sax00622 Staphylococcus aureus USA300 TCH1516 SBML MML
scl00622 Sorangium cellulosum SBML MML
sco00622 Streptomyces coelicolor SBML MML
sen00622 Saccharopolyspora erythraea SBML MML
sep00622 Staphylococcus epidermidis ATCC 12228 SBML MML
ser00622 Staphylococcus epidermidis RP62A SBML MML
sfu00622 Syntrophobacter fumaroxidans SBML MML
sgr00622 Streptomyces griseus SBML MML
she00622 Shewanella sp. MR-4 SBML MML
shl00622 Shewanella halifaxensis SBML MML
sil00622 Ruegeria pomeroyi SBML MML
sit00622 Silicibacter sp. TM1040 SBML MML
sma00622 Streptomyces avermitilis SBML MML
smd00622 Sinorhizobium medicae SBML MML
sme00622 Sinorhizobium meliloti SBML MML
sml00622 Stenotrophomonas maltophilia SBML MML
spe00622 Serratia proteamaculans SBML MML
spl00622 Shewanella pealeana SBML MML
ssn00622 Shigella sonnei SBML MML
sso00622 Sulfolobus solfataricus SBML MML
ssp00622 Staphylococcus saprophyticus SBML MML
sto00622 Sulfolobus tokodaii SBML MML
stp00622 Salinispora tropica SBML MML
swd00622 Shewanella woodyi ATCC 51908 SBML MML
swi00622 Sphingomonas wittichii SBML MML
tbd00622 Thiobacillus denitrificans SBML MML
tfu00622 Thermobifida fusca SBML MML
tth00622 Thermus thermophilus HB27 SBML MML
ttj00622 Thermus thermophilus HB8 SBML MML
uma00622 Ustilago maydis SBML MML
vei00622 Verminephrobacter eiseniae SBML MML
vfi00622 Vibrio fischeri SBML MML
xac00622 Xanthomonas axonopodis SBML MML
xau00622 Xanthobacter autotrophicus SBML MML
xcb00622 Xanthomonas campestris pv. campestris 8004 SBML MML
xcc00622 Xanthomonas campestris pv. campestris ATCC 33913 SBML MML
xcv00622 Xanthomonas campestris pv. vesicatoria SBML MML
xom00622 Xanthomonas oryzae MAFF311018 SBML MML
xoo00622 Xanthomonas oryzae KACC10331 SBML MML
yli00622 Yarrowia lipolytica SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.