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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Pathway 00401: Novobiocin biosynthesis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkOrganismSBMLMMLDownload Applet
aae00401 Aquifex aeolicus SBML MML
aau00401 Arthrobacter aurescens SBML MML
aav00401 Acidovorax avenae SBML MML
aba00401 Acidobacteria bacterium SBML MML
abc00401 Acinetobacter baumannii ACICU SBML MML
abm00401 Acinetobacter baumannii SDF SBML MML
abo00401 Alcanivorax borkumensis SBML MML
abu00401 Arcobacter butzleri SBML MML
aby00401 Acinetobacter baumannii AYE SBML MML
acb00401 Acinetobacter baumannii ATCC 17978 SBML MML
ace00401 Acidothermus cellulolyticus SBML MML
aci00401 Acinetobacter sp. ADP1 SBML MML
acr00401 Acidiphilium cryptum JF-5 SBML MML
ade00401 Anaeromyxobacter dehalogenans 2CP-C SBML MML
aeh00401 Alkalilimnicola ehrlichei SBML MML
afm00401 Aspergillus fumigatus SBML MML
afu00401 Archaeoglobus fulgidus SBML MML
afw00401 Anaeromyxobacter sp. Fw109-5 SBML MML
aga00401 Anopheles gambiae (mosquito) SBML MML
ago00401 Ashbya gossypii (Eremothecium gossypii) SBML MML
aha00401 Aeromonas hydrophila SBML MML
ajs00401 Acidovorax sp. JS42 SBML MML
amr00401 Acaryochloris marina SBML MML
amt00401 Alkaliphilus metalliredigens SBML MML
ana00401 Anabaena sp. PCC7120 SBML MML
ang00401 Aspergillus niger SBML MML
ani00401 Aspergillus nidulans SBML MML
aoe00401 Alkaliphilus oremlandii SBML MML
aor00401 Aspergillus oryzae SBML MML
apa00401 Actinobacillus pleuropneumoniae AP76 (serotype 7) SBML MML
ape00401 Aeropyrum pernix SBML MML
apj00401 Actinobacillus pleuropneumoniae JL03 (serotype 3) SBML MML
apl00401 Actinobacillus pleuropneumoniae L20 (serotype 5b) SBML MML
asa00401 Aeromonas salmonicida SBML MML
asu00401 Actinobacillus succinogenes SBML MML
atc00401 Agrobacterium tumefaciens C58 (Cereon) SBML MML
atu00401 Agrobacterium tumefaciens C58 SBML MML
ava00401 Anabaena variabilis SBML MML
azc00401 Azorhizobium caulinodans SBML MML
azo00401 Azoarcus sp. BH72 SBML MML
baa00401 Bacillus anthracis A2012 SBML MML
bac00401 Burkholderia ambifaria MC40-6 SBML MML
bad00401 Bifidobacterium adolescentis SBML MML
bam00401 Burkholderia cepacia SBML MML
ban00401 Bacillus anthracis Ames SBML MML
bar00401 Bacillus anthracis Ames 0581 SBML MML
bat00401 Bacillus anthracis Sterne SBML MML
bav00401 Bordetella avium SBML MML
bay00401 Bacillus amyloliquefaciens SBML MML
bba00401 Bdellovibrio bacteriovorus SBML MML
bbr00401 Bordetella bronchiseptica SBML MML
bbt00401 Bradyrhizobium sp. BTAi1 SBML MML
bca00401 Bacillus cereus ATCC 10987 SBML MML
bce00401 Bacillus cereus ATCC 14579 SBML MML
bch00401 Burkholderia cenocepacia HI2424 SBML MML
bci00401 Baumannia cicadellinicola SBML MML
bcl00401 Bacillus clausii SBML MML
bcm00401 Burkholderia cenocepacia MC0-3 SBML MML
bcn00401 Burkholderia cenocepacia AU1054 SBML MML
bcs00401 Brucella canis SBML MML
bcy00401 Bacillus cytotoxis NVH 391-98 SBML MML
bcz00401 Bacillus cereus ZK SBML MML
bfl00401 Candidatus Blochmannia floridanus SBML MML
bfr00401 Bacteroides fragilis YCH46 SBML MML
bfs00401 Bacteroides fragilis NCTC9343 SBML MML
bha00401 Bacillus halodurans SBML MML
bhe00401 Bartonella henselae SBML MML
bid00401 Beijerinckia indica SBML MML
bja00401 Bradyrhizobium japonicum SBML MML
bld00401 Bacillus licheniformis DSM13 SBML MML
bli00401 Bacillus licheniformis ATCC 14580 SBML MML
blj00401 Bifidobacterium longum DJO10A SBML MML
blo00401 Bifidobacterium longum NCC2705 SBML MML
bma00401 Burkholderia mallei ATCC 23344 SBML MML
bmb00401 Brucella abortus 9-941 SBML MML
bmc00401 Brucella abortus S19 SBML MML
bme00401 Brucella melitensis 16M SBML MML
bmf00401 Brucella melitensis biovar Abortus SBML MML
bml00401 Burkholderia mallei NCTC 10229 SBML MML
bmn00401 Burkholderia mallei NCTC 10247 SBML MML
bms00401 Brucella suis 1330 SBML MML
bmt00401 Brucella suis ATCC 23445 SBML MML
bmu00401 Burkholderia multivorans ATCC 17616 (JGI) SBML MML
bmv00401 Burkholderia mallei SAVP1 SBML MML
bmy00401 Brugia malayi (filaria) SBML MML
bov00401 Brucella ovis SBML MML
bpa00401 Bordetella parapertussis SBML MML
bpd00401 Burkholderia pseudomallei 668 SBML MML
bpe00401 Bordetella pertussis SBML MML
bph00401 Burkholderia phymatum SBML MML
bpl00401 Burkholderia pseudomallei 1106a SBML MML
bpm00401 Burkholderia pseudomallei 1710b SBML MML
bpn00401 Candidatus Blochmannia pennsylvanicus SBML MML
bps00401 Burkholderia pseudomallei K96243 SBML MML
bpt00401 Bordetella petrii SBML MML
bqu00401 Bartonella quintana SBML MML
bra00401 Bradyrhizobium sp. ORS278 SBML MML
bsu00401 Bacillus subtilis SBML MML
bte00401 Burkholderia thailandensis SBML MML
bth00401 Bacteroides thetaiotaomicron SBML MML
btk00401 Bacillus thuringiensis 97-27 SBML MML
btl00401 Bacillus thuringiensis Al Hakam SBML MML
btr00401 Bartonella tribocorum SBML MML
bur00401 Burkholderia sp. 383 SBML MML
bvi00401 Burkholderia vietnamiensis SBML MML
bvu00401 Bacteroides vulgatus SBML MML
bwe00401 Bacillus weihenstephanensis SBML MML
bxe00401 Burkholderia xenovorans SBML MML
cac00401 Clostridium acetobutylicum SBML MML
cak00401 Caulobacter sp. K31 SBML MML
cau00401 Chloroflexus aurantiacus SBML MML
cba00401 Clostridium botulinum A ATCC 19397 SBML MML
cbb00401 Clostridium botulinum B1 Okra SBML MML
cbe00401 Clostridium beijerinckii SBML MML
cbf00401 Clostridium botulinum F Langeland SBML MML
cbh00401 Clostridium botulinum A Hall SBML MML
cbk00401 Clostridium botulinum B Eklund 17B SBML MML
cbl00401 Clostridium botulinum A3 Loch Maree SBML MML
cbo00401 Clostridium botulinum A ATCC 3502 SBML MML
cch00401 Chlorobium chlorochromatii SBML MML
cco00401 Campylobacter concisus 13826 SBML MML
ccr00401 Caulobacter crescentus CB15 SBML MML
ccv00401 Campylobacter curvus SBML MML
cdf00401 Clostridium difficile SBML MML
cdi00401 Corynebacterium diphtheriae SBML MML
cef00401 Corynebacterium efficiens SBML MML
cel00401 Caenorhabditis elegans (nematode) SBML MML
cfa00401 Canis familiaris (dog) SBML MML
cff00401 Campylobacter fetus SBML MML
cgb00401 Corynebacterium glutamicum ATCC 13032 (Bielefeld) SBML MML
cgl00401 Corynebacterium glutamicum ATCC 13032 (Kyowa Hakko) SBML MML
cgr00401 Candida glabrata SBML MML
cgt00401 Corynebacterium glutamicum R SBML MML
cha00401 Campylobacter hominis ATCC BAA-381 SBML MML
chu00401 Cytophaga hutchinsonii SBML MML
chy00401 Carboxydothermus hydrogenoformans SBML MML
cja00401 Cellvibrio japonicus SBML MML
cjd00401 Campylobacter jejuni subsp. doylei 269.97 SBML MML
cje00401 Campylobacter jejuni NCTC11168 SBML MML
cjj00401 Campylobacter jejuni 81-176 SBML MML
cjk00401 Corynebacterium jeikeium SBML MML
cjr00401 Campylobacter jejuni RM1221 SBML MML
cju00401 Campylobacter jejuni 81116 SBML MML
ckl00401 Clostridium kluyveri DSM 555 SBML MML
cko00401 Citrobacter koseri ATCC BAA-895 SBML MML
cma00401 Caldivirga maquilingensis SBML MML
cme00401 Cyanidioschyzon merolae SBML MML
cmi00401 Clavibacter michiganensis subsp. michiganensis SBML MML
cms00401 Clavibacter michiganensis subsp. sepedonicus SBML MML
cnb00401 Cryptococcus neoformans B-3501A SBML MML
cne00401 Cryptococcus neoformans JEC21 SBML MML
cno00401 Clostridium novyi SBML MML
cpb00401 Chlorobium phaeobacteroides BS1 SBML MML
cpe00401 Clostridium perfringens 13 SBML MML
cpf00401 Clostridium perfringens ATCC 13124 SBML MML
cph00401 Chlorobium phaeobacteroides DSM 266 SBML MML
cpr00401 Clostridium perfringens SM101 SBML MML
cps00401 Colwellia psychrerythraea SBML MML
cpy00401 Clostridium phytofermentans SBML MML
cre00401 Chlamydomonas reinhardtii SBML MML
csa00401 Chromohalobacter salexigens SBML MML
csc00401 Caldicellulosiruptor saccharolyticus SBML MML
cta00401 Chlamydia trachomatis A/HAR-13 (serovar A) SBML MML
ctc00401 Clostridium tetani E88 SBML MML
cte00401 Chlorobaculum tepidum SBML MML
cth00401 Clostridium thermocellum SBML MML
cur00401 Corynebacterium urealyticum SBML MML
cvi00401 Chromobacterium violaceum SBML MML
cya00401 Cyanobacteria Yellowstone A-Prime SBML MML
cyb00401 Cyanobacteria Yellowstone B-Prime SBML MML
cyt00401 Cyanothece sp. ATCC 51142 SBML MML
daag00401 (Undocumented) SBML MML
dac00401 Delftia acidovorans SBML MML
dame00401 (Undocumented) SBML MML
dar00401 Dechloromonas aromatica SBML MML
dau00401 Candidatus Desulforudis audaxviator SBML MML
dbmo00401 Bombyx mori (silkmoth) SBML MML
dcbr00401 (Undocumented) SBML MML
dcin00401 (Undocumented) SBML MML
dde00401 Desulfovibrio desulfuricans G20 SBML MML
ddi00401 Dictyostelium discoideum SBML MML
deb00401 Dehalococcoides sp. BAV1 SBML MML
decb00401 (Undocumented) SBML MML
deh00401 Dehalococcoides sp. CBDB1 SBML MML
det00401 Dehalococcoides ethenogenes SBML MML
dfru00401 Fugu rubripes (Japanese puffer fish) SBML MML
dge00401 Deinococcus geothermalis SBML MML
dkwa00401 Kluyveromyces waltii SBML MML
dme00401 Drosophila melanogaster (fruit fly) SBML MML
dol00401 Candidatus Desulfococcus oleovorans SBML MML
dola00401 Oryzias latipes (Japanese medaka) SBML MML
dota00401 Ostreococcus tauri SBML MML
dpo00401 Drosophila pseudoobscura pseudoobscura SBML MML
dpop00401 (Undocumented) SBML MML
dps00401 Desulfotalea psychrophila SBML MML
dptm00401 (Undocumented) SBML MML
dra00401 Deinococcus radiodurans SBML MML
drm00401 Desulfotomaculum reducens SBML MML
dsba00401 Saccharomyces bayanus SBML MML
dsh00401 Dinoroseobacter shibae SBML MML
dsmi00401 Saccharomyces mikatae SBML MML
dspd00401 (Undocumented) SBML MML
dsy00401 Desulfitobacterium hafniense Y51 SBML MML
dtps00401 (Undocumented) SBML MML
dvl00401 Desulfovibrio vulgaris DP4 SBML MML
dvu00401 Desulfovibrio vulgaris Hildenborough SBML MML
dvvi00401 (Undocumented) SBML MML
eacp00401 (Undocumented) SBML MML
eath00401 Arabidopsis thaliana (thale cress) (EST) SBML MML
eba00401 Aromatoleum aromaticum EbN1 SBML MML
ebna00401 Brassica napus (rape) (EST) SBML MML
eca00401 Erwinia carotovora SBML MML
ecan00401 Capsicum annuum (chile pepper) (EST) SBML MML
ecc00401 Escherichia coli CFT073 (UPEC) SBML MML
ecd00401 Escherichia coli K-12 DH10B SBML MML
ece00401 Escherichia coli O157 EDL933 (EHEC) SBML MML
eci00401 Escherichia coli UTI89 (UPEC) SBML MML
ecj00401 Escherichia coli K-12 W3110 SBML MML
ecl00401 Escherichia coli ATCC 8739 SBML MML
ecm00401 Escherichia coli SECEC SBML MML
eco00401 Escherichia coli K-12 MG1655 SBML MML
ecp00401 Escherichia coli 536 (UPEC) SBML MML
ecs00401 Escherichia coli O157 Sakai (EHEC) SBML MML
ecsi00401 Citrus sinensis (Valencia orange) (EST) SBML MML
ecsv00401 Ciona savignyi (EST) SBML MML
ecv00401 Escherichia coli APEC O1 SBML MML
ecw00401 Escherichia coli E24377A SBML MML
ecx00401 Escherichia coli HS SBML MML
eees00401 Euphorbia esula (leafy spurge) (EST) SBML MML
efar00401 Festuca arundinacea (tall fescue) (EST) SBML MML
egar00401 Gossypium arboreum (tree cotton) (EST) SBML MML
eghi00401 Gossypium hirsutum (upland cotton) (EST) SBML MML
egma00401 Glycine max (soybean) (EST) SBML MML
egra00401 Gossypium raimondii (EST) SBML MML
ehan00401 Helianthus annuus (sunflower) (EST) SBML MML
ehvu00401 Hordeum vulgare (barley) (EST) SBML MML
eli00401 Erythrobacter litoralis SBML MML
elja00401 Lotus japonicus (lotus) (EST) SBML MML
elst00401 Lactuca sativa (lettuce) (EST) SBML MML
elvi00401 Lactuca virosa (wild lettuce) (EST) SBML MML
emec00401 Manihot esculenta (cassava) (EST) SBML MML
emtr00401 Medicago truncatula (barrel medic) (EST) SBML MML
ent00401 Enterobacter sp. 638 SBML MML
eosa00401 Oryza sativa (rice) (EST) SBML MML
eosi00401 Oryza sativa indica (Indian rice) (EST) SBML MML
eosj00401 Oryza sativa japonica (Japanese rice) (EST) SBML MML
epgl00401 Picea glauca (white spruce) (EST) SBML MML
epop00401 Populus trichocarpa (black cottonwood) (EST) SBML MML
eppa00401 (Undocumented) SBML MML
eppp00401 Physcomitrella patens subsp. patens (EST) SBML MML
epsi00401 Picea sitchensis (sitka spruce) (EST) SBML MML
epta00401 Pinus taeda (loblolly pine) (EST) SBML MML
esa00401 Enterobacter sakazakii SBML MML
esbi00401 Sorghum bicolor (sorghum) (EST) SBML MML
esi00401 Exiguobacterium sibiricum SBML MML
esly00401 Solanum lycopersicum (tomato) (EST) SBML MML
esof00401 Saccharum officinarum (sugarcane) (EST) SBML MML
espp00401 (Undocumented) SBML MML
estu00401 Solanum tuberosum (potato) (EST) SBML MML
eta00401 Erwinia tasmaniensis SBML MML
etae00401 Triticum aestivum (wheat) (EST) SBML MML
evvi00401 Vitis vinifera (wine grape) (EST) SBML MML
ezma00401 Zea mays (maize) (EST) SBML MML
fal00401 Frankia alni SBML MML
fgr00401 Fusarium graminearum SBML MML
fjo00401 Flavobacterium johnsoniae SBML MML
fma00401 Finegoldia magna SBML MML
fno00401 Fervidobacterium nodosum SBML MML
fnu00401 Fusobacterium nucleatum SBML MML
fph00401 Francisella philomiragia SBML MML
fps00401 Flavobacterium psychrophilum SBML MML
fra00401 Frankia sp. CcI3 SBML MML
fre00401 Frankia sp. EAN1pec SBML MML
gbe00401 Granulobacter bethesdensis SBML MML
gdi00401 Gluconacetobacter diazotrophicus PAl 5 (Brazil) SBML MML
gfo00401 Gramella forsetii SBML MML
gga00401 Gallus gallus (chicken) SBML MML
gka00401 Geobacillus kaustophilus SBML MML
glo00401 Geobacter lovleyi SBML MML
gme00401 Geobacter metallireducens SBML MML
gox00401 Gluconobacter oxydans SBML MML
gsu00401 Geobacter sulfurreducens SBML MML
gur00401 Geobacter uraniumreducens SBML MML
gvi00401 Gloeobacter violaceus SBML MML
hal00401 Halobacterium sp. NRC-1 SBML MML
har00401 Herminiimonas arsenicoxydans SBML MML
hau00401 Herpetosiphon aurantiacus SBML MML
hbu00401 Hyperthermus butylicus SBML MML
hch00401 Hahella chejuensis SBML MML
hha00401 Halorhodospira halophila SBML MML
hhe00401 Helicobacter hepaticus SBML MML
hin00401 Haemophilus influenzae Rd KW20 (serotype d) SBML MML
hip00401 Haemophilus influenzae PittEE SBML MML
hiq00401 Haemophilus influenzae PittGG SBML MML
hit00401 Haemophilus influenzae 86-028NP (nontypeable) SBML MML
hma00401 Haloarcula marismortui SBML MML
hmo00401 Heliobacterium modesticaldum SBML MML
hne00401 Hyphomonas neptunium SBML MML
hpa00401 Helicobacter pylori HPAG1 SBML MML
hsa00401 Homo sapiens (human) SBML MML
hsl00401 Halobacterium salinarum R1 SBML MML
hsm00401 Haemophilus somnus 2336 SBML MML
hso00401 Haemophilus somnus 129PT SBML MML
hwa00401 Haloquadratum walsbyi SBML MML
iho00401 Ignicoccus hospitalis SBML MML
ilo00401 Idiomarina loihiensis SBML MML
jan00401 Jannaschia sp. CCS1 SBML MML
kla00401 Kluyveromyces lactis SBML MML
kpn00401 Klebsiella pneumoniae SBML MML
kra00401 Kineococcus radiotolerans SBML MML
krh00401 Kocuria rhizophila SBML MML
lbc00401 Laccaria bicolor SBML MML
lbf00401 Leptospira biflexa serovar Patoc Patoc 1 (Ames) SBML MML
lbi00401 Leptospira biflexa serovar Patoc Patoc 1 (Paris) SBML MML
lbj00401 Leptospira borgpetersenii JB197 SBML MML
lbl00401 Leptospira borgpetersenii L550 SBML MML
lca00401 Lactobacillus casei ATCC 334 SBML MML
lch00401 Leptothrix cholodnii SBML MML
lci00401 Leuconostoc citreum SBML MML
lfe00401 Lactobacillus fermentum SBML MML
lic00401 Leptospira interrogans serovar Copenhageni SBML MML
lil00401 Leptospira interrogans serovar lai SBML MML
lin00401 Listeria innocua SBML MML
lla00401 Lactococcus lactis subsp. lactis IL1403 SBML MML
llc00401 Lactococcus lactis subsp. cremoris SK11 SBML MML
llm00401 Lactococcus lactis subsp. cremoris MG1363 SBML MML
lma00401 Leishmania major SBML MML
lme00401 Leuconostoc mesenteroides SBML MML
lmf00401 Listeria monocytogenes F2365 SBML MML
lmo00401 Listeria monocytogenes EGD-e SBML MML
lpc00401 Legionella pneumophila Corby SBML MML
lpf00401 Legionella pneumophila Lens SBML MML
lpl00401 Lactobacillus plantarum WCFS1 SBML MML
lpn00401 Legionella pneumophila Philadelphia 1 SBML MML
lpp00401 Legionella pneumophila Paris SBML MML
lre00401 Lactobacillus reuteri DSM 20016 SBML MML
lsl00401 Lactobacillus salivarius SBML MML
lsp00401 Lysinibacillus sphaericus SBML MML
lwe00401 Listeria welshimeri SLCC5334 SBML MML
lxx00401 Leifsonia xyli xyli CTCB07 SBML MML
mab00401 Mycobacterium abscessus ATCC 19977T SBML MML
mac00401 Methanosarcina acetivorans SBML MML
mae00401 Methanococcus aeolicus SBML MML
mag00401 Magnetospirillum magneticum SBML MML
maq00401 Marinobacter aquaeolei SBML MML
mar00401 Microcystis aeruginosa SBML MML
mav00401 Mycobacterium avium 104 SBML MML
mba00401 Methanosarcina barkeri SBML MML
mbb00401 Mycobacterium bovis BCG Pasteur 1173P2 SBML MML
mbn00401 Candidatus Methanoregula boonei SBML MML
mbo00401 Mycobacterium bovis AF2122/97 SBML MML
mbr00401 Monosiga brevicollis SBML MML
mbu00401 Methanococcoides burtonii SBML MML
mca00401 Methylococcus capsulatus SBML MML
mcc00401 Macaca mulatta (rhesus monkey) SBML MML
mdo00401 Monodelphis domestica (opossum) SBML MML
mem00401 Methanoculleus marisnigri SBML MML
mes00401 Mesorhizobium sp. BNC1 SBML MML
met00401 Methylobacterium sp. 4-46 SBML MML
mex00401 Methylobacterium extorquens SBML MML
mfa00401 Methylobacillus flagellatus SBML MML
mgi00401 Mycobacterium gilvum SBML MML
mgl00401 Malassezia globosa SBML MML
mgm00401 Magnetococcus sp. MC-1 SBML MML
mhu00401 Methanospirillum hungatei SBML MML
mja00401 Methanococcus jannaschii SBML MML
mjl00401 Mycobacterium sp. JLS SBML MML
mka00401 Methanopyrus kandleri SBML MML
mkm00401 Mycobacterium sp. KMS SBML MML
mle00401 Mycobacterium leprae TN SBML MML
mlo00401 Mesorhizobium loti SBML MML
mma00401 Methanosarcina mazei SBML MML
mmc00401 Mycobacterium sp. MCS SBML MML
mmi00401 Mycobacterium marinum M SBML MML
mmp00401 Methanococcus maripaludis S2 SBML MML
mmr00401 Maricaulis maris SBML MML
mms00401 Minibacterium massiliensis SBML MML
mmu00401 Mus musculus (mouse) SBML MML
mmw00401 Marinomonas sp. MWYL1 SBML MML
mmx00401 Methanococcus maripaludis C6 SBML MML
mmz00401 Methanococcus maripaludis C7 SBML MML
mpa00401 Mycobacterium avium paratuberculosis SBML MML
mpt00401 Methylibium petroleiphilum SBML MML
mra00401 Mycobacterium tuberculosis H37Ra SBML MML
mrd00401 Methylobacterium radiotolerans SBML MML
mse00401 Metallosphaera sedula SBML MML
msi00401 Methanobrevibacter smithii ATCC 35061 SBML MML
msm00401 Mycobacterium smegmatis SBML MML
mst00401 Methanosphaera stadtmanae SBML MML
msu00401 Mannheimia succiniciproducens SBML MML
mta00401 Moorella thermoacetica SBML MML
mtc00401 Mycobacterium tuberculosis CDC1551 SBML MML
mtf00401 Mycobacterium tuberculosis F11 SBML MML
mth00401 Methanobacterium thermoautotrophicum SBML MML
mtu00401 Mycobacterium tuberculosis H37Rv SBML MML
mul00401 Mycobacterium ulcerans SBML MML
mva00401 Mycobacterium vanbaalenii SBML MML
mvn00401 Methanococcus vannielii SBML MML
mxa00401 Myxococcus xanthus SBML MML
nar00401 Novosphingobium aromaticivorans SBML MML
nca00401 Nocardioides sp. JS614 SBML MML
ncr00401 Neurospora crassa SBML MML
net00401 Nitrosomonas eutropha SBML MML
neu00401 Nitrosomonas europaea SBML MML
nfa00401 Nocardia farcinica SBML MML
ngo00401 Neisseria gonorrhoeae SBML MML
nha00401 Nitrobacter hamburgensis SBML MML
nis00401 Nitratiruptor sp. SB155-2 SBML MML
nma00401 Neisseria meningitidis Z2491 (serogroup A) SBML MML
nmc00401 Neisseria meningitidis FAM18 (serogroup C) SBML MML
nme00401 Neisseria meningitidis MC58 (serogroup B) SBML MML
nmn00401 Neisseria meningitidis 053442 (serogroup C) SBML MML
nmr00401 Nitrosopumilus maritimus SBML MML
nmu00401 Nitrosospira multiformis SBML MML
noc00401 Nitrosococcus oceani SBML MML
nph00401 Natronomonas pharaonis SBML MML
npu00401 Nostoc punctiforme SBML MML
nve00401 Nematostella vectensis (sea anemone) SBML MML
nwi00401 Nitrobacter winogradskyi SBML MML
oaa00401 Ornithorhynchus anatinus (platypus) SBML MML
oan00401 Ochrobactrum anthropi SBML MML
oih00401 Oceanobacillus iheyensis SBML MML
olu00401 Ostreococcus lucimarinus SBML MML
osa00401 Oryza sativa japonica (Japanese rice) SBML MML
ote00401 Opitutus terrae SBML MML
pab00401 Pyrococcus abyssi SBML MML
pac00401 Propionibacterium acnes SBML MML
pae00401 Pseudomonas aeruginosa PAO1 SBML MML
pai00401 Pyrobaculum aerophilum SBML MML
pan00401 Podospora anserina SBML MML
pap00401 Pseudomonas aeruginosa PA7 SBML MML
par00401 Psychrobacter arcticum SBML MML
pas00401 Pyrobaculum arsenaticum SBML MML
pat00401 Pseudoalteromonas atlantica SBML MML
pau00401 Pseudomonas aeruginosa UCBPP-PA14 SBML MML
pca00401 Pelobacter carbinolicus SBML MML
pcl00401 Pyrobaculum calidifontis SBML MML
pcr00401 Psychrobacter cryohalolentis SBML MML
pde00401 Paracoccus denitrificans SBML MML
pdi00401 Parabacteroides distasonis SBML MML
pen00401 Pseudomonas entomophila SBML MML
pfl00401 Pseudomonas fluorescens Pf-5 SBML MML
pfo00401 Pseudomonas fluorescens Pf0-1 SBML MML
pfu00401 Pyrococcus furiosus SBML MML
pha00401 Pseudoalteromonas haloplanktis SBML MML
pho00401 Pyrococcus horikoshii SBML MML
pic00401 Pichia stipitis SBML MML
pin00401 Psychromonas ingrahamii SBML MML
pis00401 Pyrobaculum islandicum SBML MML
pla00401 Parvibaculum lavamentivorans SBML MML
plt00401 Pelodictyon luteolum SBML MML
plu00401 Photorhabdus luminescens SBML MML
pma00401 Prochlorococcus marinus SS120 SBML MML
pmb00401 Prochlorococcus marinus AS9601 SBML MML
pmc00401 Prochlorococcus marinus MIT 9515 SBML MML
pme00401 Prochlorococcus marinus NATL1A SBML MML
pmf00401 Prochlorococcus marinus MIT 9303 SBML MML
pmg00401 Prochlorococcus marinus MIT 9301 SBML MML
pmh00401 Prochlorococcus marinus MIT 9215 SBML MML
pmi00401 Prochlorococcus marinus MIT9312 SBML MML
pmj00401 Prochlorococcus marinus MIT 9211 SBML MML
pmm00401 Prochlorococcus marinus MED4 SBML MML
pmn00401 Prochlorococcus marinus NATL2A SBML MML
pmo00401 Petrotoga mobilis SBML MML
pmt00401 Prochlorococcus marinus MIT9313 SBML MML
pmu00401 Pasteurella multocida SBML MML
pmy00401 Pseudomonas mendocina SBML MML
pna00401 Polaromonas naphthalenivorans SBML MML
pne00401 Polynucleobacter necessarius SBML MML
pnu00401 Polynucleobacter sp. QLW-P1DMWA-1 SBML MML
pol00401 Polaromonas sp. JS666 SBML MML
ppd00401 Pelobacter propionicus SBML MML
ppf00401 Pseudomonas putida F1 SBML MML
ppg00401 Pseudomonas putida GB-1 SBML MML
ppp00401 Physcomitrella patens subsp. patens SBML MML
ppr00401 Photobacterium profundum SBML MML
ppu00401 Pseudomonas putida KT2440 SBML MML
ppw00401 Pseudomonas putida W619 SBML MML
prw00401 Psychrobacter sp. PRwf-1 SBML MML
psa00401 Pseudomonas stutzeri SBML MML
psb00401 Pseudomonas syringae pv. syringae B728a SBML MML
psp00401 Pseudomonas syringae pv. phaseolicola 1448A SBML MML
pst00401 Pseudomonas syringae pv. tomato DC3000 SBML MML
pth00401 Pelotomaculum thermopropionicum SBML MML
pto00401 Picrophilus torridus SBML MML
ptr00401 Pan troglodytes (chimpanzee) SBML MML
pub00401 Candidatus Pelagibacter ubique SBML MML
pvi00401 Prosthecochloris vibrioformis SBML MML
rba00401 Rhodopirellula baltica SBML MML
rca00401 Roseiflexus castenholzii DSM13941 SBML MML
rci00401 Uncultured methanogenic archaeon RC-I SBML MML
rde00401 Roseobacter denitrificans SBML MML
rec00401 Rhizobium etli CIAT 652 SBML MML
reh00401 Ralstonia eutropha H16 SBML MML
ret00401 Rhizobium etli CFN 42 SBML MML
reu00401 Ralstonia eutropha JMP134 SBML MML
rfr00401 Rhodoferax ferrireducens SBML MML
rha00401 Rhodococcus sp. RHA1 SBML MML
rle00401 Rhizobium leguminosarum SBML MML
rma00401 Candidatus Ruthia magnifica SBML MML
rme00401 Ralstonia metallidurans SBML MML
rno00401 Rattus norvegicus (rat) SBML MML
rpa00401 Rhodopseudomonas palustris CGA009 SBML MML
rpb00401 Rhodopseudomonas palustris HaA2 SBML MML
rpc00401 Rhodopseudomonas palustris BisB18 SBML MML
rpd00401 Rhodopseudomonas palustris BisB5 SBML MML
rpe00401 Rhodopseudomonas palustris BisA53 SBML MML
rpt00401 Rhodopseudomonas palustris TIE-1 SBML MML
rrs00401 Roseiflexus sp. RS-1 SBML MML
rru00401 Rhodospirillum rubrum SBML MML
rsa00401 Renibacterium salmoninarum SBML MML
rsh00401 Rhodobacter sphaeroides ATCC 17029 SBML MML
rso00401 Ralstonia solanacearum SBML MML
rsp00401 Rhodobacter sphaeroides 2.4.1 SBML MML
rsq00401 Rhodobacter sphaeroides ATCC 17025 SBML MML
rxy00401 Rubrobacter xylanophilus SBML MML
sai00401 Sulfolobus acidocaldarius SBML MML
sal00401 Sphingopyxis alaskensis SBML MML
saq00401 Salinispora arenicola SBML MML
sat00401 Syntrophus aciditrophicus SBML MML
saz00401 Shewanella amazonensis SBML MML
sbc00401 Shigella boydii CDC 3083-94 SBML MML
sbl00401 Shewanella baltica OS155 SBML MML
sbm00401 Shewanella baltica OS185 SBML MML
sbn00401 Shewanella baltica OS195 SBML MML
sbo00401 Shigella boydii Sb227 SBML MML
sce00401 Saccharomyces cerevisiae SBML MML
scl00401 Sorangium cellulosum SBML MML
sco00401 Streptomyces coelicolor SBML MML
sde00401 Saccharophagus degradans SBML MML
sdn00401 Shewanella denitrificans SBML MML
sdy00401 Shigella dysenteriae SBML MML
sec00401 Salmonella enterica subsp. enterica serovar Choleraesuis SBML MML
sen00401 Saccharopolyspora erythraea SBML MML
ses00401 Salmonella enterica subsp. arizonae SBML MML
sfl00401 Shigella flexneri 301 (serotype 2a) SBML MML
sfr00401 Shewanella frigidimarina SBML MML
sfu00401 Syntrophobacter fumaroxidans SBML MML
sfv00401 Shigella flexneri 8401 (serotype 5b) SBML MML
sfx00401 Shigella flexneri 2457T (serotype 2a) SBML MML
sgl00401 Sodalis glossinidius SBML MML
sgo00401 Streptococcus gordonii SBML MML
sgr00401 Streptomyces griseus SBML MML
sha00401 Staphylococcus haemolyticus SBML MML
shl00401 Shewanella halifaxensis SBML MML
shm00401 Shewanella sp. MR-7 SBML MML
shn00401 Shewanella sp. ANA-3 SBML MML
shw00401 Shewanella sp. W3-18-1 SBML MML
sil00401 Ruegeria pomeroyi SBML MML
sit00401 Silicibacter sp. TM1040 SBML MML
slo00401 Shewanella loihica SBML MML
sma00401 Streptomyces avermitilis SBML MML
smd00401 Sinorhizobium medicae SBML MML
sme00401 Sinorhizobium meliloti SBML MML
sml00401 Stenotrophomonas maltophilia SBML MML
smu00401 Streptococcus mutans SBML MML
son00401 Shewanella oneidensis SBML MML
spc00401 Shewanella putrefaciens SBML MML
spe00401 Serratia proteamaculans SBML MML
spl00401 Shewanella pealeana SBML MML
spo00401 Schizosaccharomyces pombe SBML MML
spq00401 Salmonella enterica subsp. enterica serovar Paratyphi B SBML MML
spt00401 Salmonella enterica subsp. enterica serovar Paratyphi A SBML MML
spu00401 Strongylocentrotus purpuratus (purple sea urchin) SBML MML
sru00401 Salinibacter ruber SBML MML
ssa00401 Streptococcus sanguinis SBML MML
sse00401 Shewanella sediminis SBML MML
ssn00401 Shigella sonnei SBML MML
sso00401 Sulfolobus solfataricus SBML MML
ste00401 Streptococcus thermophilus LMD-9 SBML MML
sth00401 Symbiobacterium thermophilum SBML MML
stm00401 Salmonella typhimurium LT2 SBML MML
sto00401 Sulfolobus tokodaii SBML MML
stp00401 Salinispora tropica SBML MML
stt00401 Salmonella enterica subsp. enterica serovar Typhi Ty2 SBML MML
sty00401 Salmonella enterica subsp. enterica serovar Typhi CT18 SBML MML
sul00401 Sulfurihydrogenibium sp. YO3AOP1 SBML MML
sun00401 Sulfurovum sp. NBC37-1 SBML MML
sus00401 Solibacter usitatus SBML MML
swd00401 Shewanella woodyi ATCC 51908 SBML MML
swi00401 Sphingomonas wittichii SBML MML
swo00401 Syntrophomonas wolfei SBML MML
syc00401 Synechococcus elongatus PCC6301 SBML MML
syd00401 Synechococcus sp. CC9605 SBML MML
sye00401 Synechococcus sp. CC9902 SBML MML
syf00401 Synechococcus elongatus PCC7942 SBML MML
syg00401 Synechococcus sp. CC9311 SBML MML
syn00401 Synechocystis sp. PCC6803 SBML MML
syp00401 Synechococcus sp. PCC7002 SBML MML
syr00401 Synechococcus sp. RCC307 SBML MML
syw00401 Synechococcus sp. WH8102 SBML MML
syx00401 Synechococcus sp. WH7803 SBML MML
tac00401 Thermoplasma acidophilum SBML MML
tbd00401 Thiobacillus denitrificans SBML MML
tca00401 Tribolium castaneum (red flour beetle) SBML MML
tcr00401 Trypanosoma cruzi SBML MML
tcx00401 Thiomicrospira crunogena SBML MML
tdn00401 Thiomicrospira denitrificans SBML MML
tel00401 Thermosynechococcus elongatus SBML MML
ter00401 Trichodesmium erythraeum SBML MML
tet00401 Tetrahymena thermophila SBML MML
tex00401 Thermoanaerobacter sp. X514 SBML MML
tfu00401 Thermobifida fusca SBML MML
tko00401 Thermococcus kodakaraensis SBML MML
tle00401 Thermotoga lettingae SBML MML
tma00401 Thermotoga maritima SBML MML
tme00401 Thermosipho melanesiensis SBML MML
tne00401 Thermoproteus neutrophilus SBML MML
tpd00401 Thermoanaerobacter pseudethanolicus SBML MML
tpt00401 Thermotoga petrophila SBML MML
trq00401 Thermotoga sp. RQ2 SBML MML
tte00401 Thermoanaerobacter tengcongensis SBML MML
tth00401 Thermus thermophilus HB27 SBML MML
ttj00401 Thermus thermophilus HB8 SBML MML
tvo00401 Thermoplasma volcanium SBML MML
twh00401 Tropheryma whipplei Twist SBML MML
tws00401 Tropheryma whipplei TW08/27 SBML MML
uma00401 Ustilago maydis SBML MML
vch00401 Vibrio cholerae O1 SBML MML
vco00401 Vibrio cholerae O395 SBML MML
vei00401 Verminephrobacter eiseniae SBML MML
vfi00401 Vibrio fischeri SBML MML
vha00401 Vibrio harveyi SBML MML
vok00401 Candidatus Vesicomyosocius okutanii SBML MML
vpa00401 Vibrio parahaemolyticus SBML MML
vpo00401 Vanderwaltozyma polyspora SBML MML
vvu00401 Vibrio vulnificus CMCP6 SBML MML
vvy00401 Vibrio vulnificus YJ016 SBML MML
wsu00401 Wolinella succinogenes SBML MML
xac00401 Xanthomonas axonopodis SBML MML
xau00401 Xanthobacter autotrophicus SBML MML
xcb00401 Xanthomonas campestris pv. campestris 8004 SBML MML
xcc00401 Xanthomonas campestris pv. campestris ATCC 33913 SBML MML
xcv00401 Xanthomonas campestris pv. vesicatoria SBML MML
xfa00401 Xylella fastidiosa 9a5c SBML MML
xfm00401 Xylella fastidiosa M12 SBML MML
xfn00401 Xylella fastidiosa M23 SBML MML
xft00401 Xylella fastidiosa Temecula1 SBML MML
xom00401 Xanthomonas oryzae MAFF311018 SBML MML
xoo00401 Xanthomonas oryzae KACC10331 SBML MML
xtr00401 Xenopus tropicalis (western clawed frog) SBML MML
yen00401 Yersinia enterocolitica SBML MML
yli00401 Yarrowia lipolytica SBML MML
ypa00401 Yersinia pestis Antiqua SBML MML
ype00401 Yersinia pestis CO92 SBML MML
ypg00401 Yersinia pestis Angola SBML MML
ypi00401 Yersinia pseudotuberculosis IP31758 SBML MML
ypk00401 Yersinia pestis KIM SBML MML
ypm00401 Yersinia pestis Mediaevails SBML MML
ypn00401 Yersinia pestis Nepal516 SBML MML
ypp00401 Yersinia pestis Pestoides SBML MML
yps00401 Yersinia pseudotuberculosis IP32953 SBML MML
ypy00401 Yersinia pseudotuberculosis YPIII SBML MML
zmo00401 Zymomonas mobilis SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.