This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Pathway 00360: Phenylalanine metabolism

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkOrganismSBMLMMLDownload Applet
aae00360 Aquifex aeolicus SBML MML
aau00360 Arthrobacter aurescens SBML MML
aav00360 Acidovorax avenae SBML MML
aba00360 Acidobacteria bacterium SBML MML
abc00360 Acinetobacter baumannii ACICU SBML MML
abm00360 Acinetobacter baumannii SDF SBML MML
abo00360 Alcanivorax borkumensis SBML MML
abu00360 Arcobacter butzleri SBML MML
aby00360 Acinetobacter baumannii AYE SBML MML
acb00360 Acinetobacter baumannii ATCC 17978 SBML MML
ace00360 Acidothermus cellulolyticus SBML MML
aci00360 Acinetobacter sp. ADP1 SBML MML
acr00360 Acidiphilium cryptum JF-5 SBML MML
ade00360 Anaeromyxobacter dehalogenans 2CP-C SBML MML
aeh00360 Alkalilimnicola ehrlichei SBML MML
afm00360 Aspergillus fumigatus SBML MML
afu00360 Archaeoglobus fulgidus SBML MML
afw00360 Anaeromyxobacter sp. Fw109-5 SBML MML
aga00360 Anopheles gambiae (mosquito) SBML MML
ago00360 Ashbya gossypii (Eremothecium gossypii) SBML MML
aha00360 Aeromonas hydrophila SBML MML
ajs00360 Acidovorax sp. JS42 SBML MML
amr00360 Acaryochloris marina SBML MML
amt00360 Alkaliphilus metalliredigens SBML MML
ana00360 Anabaena sp. PCC7120 SBML MML
ang00360 Aspergillus niger SBML MML
ani00360 Aspergillus nidulans SBML MML
aoe00360 Alkaliphilus oremlandii SBML MML
aor00360 Aspergillus oryzae SBML MML
apa00360 Actinobacillus pleuropneumoniae AP76 (serotype 7) SBML MML
ape00360 Aeropyrum pernix SBML MML
aph00360 Anaplasma phagocytophilum SBML MML
apj00360 Actinobacillus pleuropneumoniae JL03 (serotype 3) SBML MML
apl00360 Actinobacillus pleuropneumoniae L20 (serotype 5b) SBML MML
art00360 Arthrobacter sp. FB24 SBML MML
asa00360 Aeromonas salmonicida SBML MML
asu00360 Actinobacillus succinogenes SBML MML
atc00360 Agrobacterium tumefaciens C58 (Cereon) SBML MML
ath00360 Arabidopsis thaliana (thale cress) SBML MML
atu00360 Agrobacterium tumefaciens C58 SBML MML
ava00360 Anabaena variabilis SBML MML
azc00360 Azorhizobium caulinodans SBML MML
azo00360 Azoarcus sp. BH72 SBML MML
baa00360 Bacillus anthracis A2012 SBML MML
bac00360 Burkholderia ambifaria MC40-6 SBML MML
bad00360 Bifidobacterium adolescentis SBML MML
bam00360 Burkholderia cepacia SBML MML
ban00360 Bacillus anthracis Ames SBML MML
bar00360 Bacillus anthracis Ames 0581 SBML MML
bat00360 Bacillus anthracis Sterne SBML MML
bav00360 Bordetella avium SBML MML
bay00360 Bacillus amyloliquefaciens SBML MML
bba00360 Bdellovibrio bacteriovorus SBML MML
bbk00360 Bartonella bacilliformis SBML MML
bbr00360 Bordetella bronchiseptica SBML MML
bbt00360 Bradyrhizobium sp. BTAi1 SBML MML
bca00360 Bacillus cereus ATCC 10987 SBML MML
bce00360 Bacillus cereus ATCC 14579 SBML MML
bch00360 Burkholderia cenocepacia HI2424 SBML MML
bci00360 Baumannia cicadellinicola SBML MML
bcl00360 Bacillus clausii SBML MML
bcm00360 Burkholderia cenocepacia MC0-3 SBML MML
bcn00360 Burkholderia cenocepacia AU1054 SBML MML
bcs00360 Brucella canis SBML MML
bcy00360 Bacillus cytotoxis NVH 391-98 SBML MML
bcz00360 Bacillus cereus ZK SBML MML
bfl00360 Candidatus Blochmannia floridanus SBML MML
bfr00360 Bacteroides fragilis YCH46 SBML MML
bfs00360 Bacteroides fragilis NCTC9343 SBML MML
bha00360 Bacillus halodurans SBML MML
bid00360 Beijerinckia indica SBML MML
bja00360 Bradyrhizobium japonicum SBML MML
bld00360 Bacillus licheniformis DSM13 SBML MML
bli00360 Bacillus licheniformis ATCC 14580 SBML MML
blj00360 Bifidobacterium longum DJO10A SBML MML
blo00360 Bifidobacterium longum NCC2705 SBML MML
bma00360 Burkholderia mallei ATCC 23344 SBML MML
bmb00360 Brucella abortus 9-941 SBML MML
bmc00360 Brucella abortus S19 SBML MML
bme00360 Brucella melitensis 16M SBML MML
bmf00360 Brucella melitensis biovar Abortus SBML MML
bml00360 Burkholderia mallei NCTC 10229 SBML MML
bmn00360 Burkholderia mallei NCTC 10247 SBML MML
bms00360 Brucella suis 1330 SBML MML
bmt00360 Brucella suis ATCC 23445 SBML MML
bmu00360 Burkholderia multivorans ATCC 17616 (JGI) SBML MML
bmv00360 Burkholderia mallei SAVP1 SBML MML
bmy00360 Brugia malayi (filaria) SBML MML
bov00360 Brucella ovis SBML MML
bpa00360 Bordetella parapertussis SBML MML
bpd00360 Burkholderia pseudomallei 668 SBML MML
bpe00360 Bordetella pertussis SBML MML
bph00360 Burkholderia phymatum SBML MML
bpl00360 Burkholderia pseudomallei 1106a SBML MML
bpm00360 Burkholderia pseudomallei 1710b SBML MML
bpn00360 Candidatus Blochmannia pennsylvanicus SBML MML
bps00360 Burkholderia pseudomallei K96243 SBML MML
bpt00360 Bordetella petrii SBML MML
bpu00360 Bacillus pumilus SBML MML
bra00360 Bradyrhizobium sp. ORS278 SBML MML
bsu00360 Bacillus subtilis SBML MML
bta00360 Bos taurus (cow) SBML MML
bte00360 Burkholderia thailandensis SBML MML
bth00360 Bacteroides thetaiotaomicron SBML MML
btk00360 Bacillus thuringiensis 97-27 SBML MML
btl00360 Bacillus thuringiensis Al Hakam SBML MML
btr00360 Bartonella tribocorum SBML MML
bur00360 Burkholderia sp. 383 SBML MML
bvi00360 Burkholderia vietnamiensis SBML MML
bvu00360 Bacteroides vulgatus SBML MML
bwe00360 Bacillus weihenstephanensis SBML MML
bxe00360 Burkholderia xenovorans SBML MML
cac00360 Clostridium acetobutylicum SBML MML
cak00360 Caulobacter sp. K31 SBML MML
cal00360 Candida albicans SBML MML
cau00360 Chloroflexus aurantiacus SBML MML
cba00360 Clostridium botulinum A ATCC 19397 SBML MML
cbb00360 Clostridium botulinum B1 Okra SBML MML
cbd00360 Coxiella burnetii Dugway 5J108-111 SBML MML
cbe00360 Clostridium beijerinckii SBML MML
cbf00360 Clostridium botulinum F Langeland SBML MML
cbh00360 Clostridium botulinum A Hall SBML MML
cbk00360 Clostridium botulinum B Eklund 17B SBML MML
cbl00360 Clostridium botulinum A3 Loch Maree SBML MML
cbo00360 Clostridium botulinum A ATCC 3502 SBML MML
cbs00360 Coxiella burnetii RSA 331 SBML MML
cch00360 Chlorobium chlorochromatii SBML MML
cco00360 Campylobacter concisus 13826 SBML MML
ccr00360 Caulobacter crescentus CB15 SBML MML
ccv00360 Campylobacter curvus SBML MML
cdf00360 Clostridium difficile SBML MML
cdi00360 Corynebacterium diphtheriae SBML MML
cef00360 Corynebacterium efficiens SBML MML
cel00360 Caenorhabditis elegans (nematode) SBML MML
cfa00360 Canis familiaris (dog) SBML MML
cff00360 Campylobacter fetus SBML MML
cgb00360 Corynebacterium glutamicum ATCC 13032 (Bielefeld) SBML MML
cgl00360 Corynebacterium glutamicum ATCC 13032 (Kyowa Hakko) SBML MML
cgr00360 Candida glabrata SBML MML
cgt00360 Corynebacterium glutamicum R SBML MML
cha00360 Campylobacter hominis ATCC BAA-381 SBML MML
chu00360 Cytophaga hutchinsonii SBML MML
chy00360 Carboxydothermus hydrogenoformans SBML MML
cja00360 Cellvibrio japonicus SBML MML
cjd00360 Campylobacter jejuni subsp. doylei 269.97 SBML MML
cje00360 Campylobacter jejuni NCTC11168 SBML MML
cjj00360 Campylobacter jejuni 81-176 SBML MML
cjk00360 Corynebacterium jeikeium SBML MML
cjr00360 Campylobacter jejuni RM1221 SBML MML
cju00360 Campylobacter jejuni 81116 SBML MML
ckl00360 Clostridium kluyveri DSM 555 SBML MML
cko00360 Citrobacter koseri ATCC BAA-895 SBML MML
cma00360 Caldivirga maquilingensis SBML MML
cme00360 Cyanidioschyzon merolae SBML MML
cmi00360 Clavibacter michiganensis subsp. michiganensis SBML MML
cms00360 Clavibacter michiganensis subsp. sepedonicus SBML MML
cnb00360 Cryptococcus neoformans B-3501A SBML MML
cne00360 Cryptococcus neoformans JEC21 SBML MML
cno00360 Clostridium novyi SBML MML
cpb00360 Chlorobium phaeobacteroides BS1 SBML MML
cpe00360 Clostridium perfringens 13 SBML MML
cpf00360 Clostridium perfringens ATCC 13124 SBML MML
cph00360 Chlorobium phaeobacteroides DSM 266 SBML MML
cpr00360 Clostridium perfringens SM101 SBML MML
cps00360 Colwellia psychrerythraea SBML MML
cpy00360 Clostridium phytofermentans SBML MML
cre00360 Chlamydomonas reinhardtii SBML MML
csa00360 Chromohalobacter salexigens SBML MML
csc00360 Caldicellulosiruptor saccharolyticus SBML MML
cta00360 Chlamydia trachomatis A/HAR-13 (serovar A) SBML MML
ctc00360 Clostridium tetani E88 SBML MML
cte00360 Chlorobaculum tepidum SBML MML
cth00360 Clostridium thermocellum SBML MML
cti00360 Cupriavidus taiwanensis SBML MML
cur00360 Corynebacterium urealyticum SBML MML
cvi00360 Chromobacterium violaceum SBML MML
cya00360 Cyanobacteria Yellowstone A-Prime SBML MML
cyb00360 Cyanobacteria Yellowstone B-Prime SBML MML
cyt00360 Cyanothece sp. ATCC 51142 SBML MML
daag00360 (Undocumented) SBML MML
dac00360 Delftia acidovorans SBML MML
dame00360 (Undocumented) SBML MML
dar00360 Dechloromonas aromatica SBML MML
dau00360 Candidatus Desulforudis audaxviator SBML MML
dbmo00360 Bombyx mori (silkmoth) SBML MML
dcbr00360 (Undocumented) SBML MML
dcin00360 (Undocumented) SBML MML
dde00360 Desulfovibrio desulfuricans G20 SBML MML
ddi00360 Dictyostelium discoideum SBML MML
deb00360 Dehalococcoides sp. BAV1 SBML MML
decb00360 (Undocumented) SBML MML
deh00360 Dehalococcoides sp. CBDB1 SBML MML
det00360 Dehalococcoides ethenogenes SBML MML
dfru00360 Fugu rubripes (Japanese puffer fish) SBML MML
dge00360 Deinococcus geothermalis SBML MML
dha00360 Debaryomyces hansenii SBML MML
dkwa00360 Kluyveromyces waltii SBML MML
dme00360 Drosophila melanogaster (fruit fly) SBML MML
dol00360 Candidatus Desulfococcus oleovorans SBML MML
dola00360 Oryzias latipes (Japanese medaka) SBML MML
dota00360 Ostreococcus tauri SBML MML
dpkn00360 (Undocumented) SBML MML
dpo00360 Drosophila pseudoobscura pseudoobscura SBML MML
dpop00360 (Undocumented) SBML MML
dps00360 Desulfotalea psychrophila SBML MML
dptm00360 (Undocumented) SBML MML
dra00360 Deinococcus radiodurans SBML MML
dre00360 Danio rerio (zebrafish) SBML MML
drm00360 Desulfotomaculum reducens SBML MML
dsba00360 Saccharomyces bayanus SBML MML
dsh00360 Dinoroseobacter shibae SBML MML
dsmi00360 Saccharomyces mikatae SBML MML
dspd00360 (Undocumented) SBML MML
dsy00360 Desulfitobacterium hafniense Y51 SBML MML
dtni00360 Tetraodon nigroviridis (green spotted puffer) SBML MML
dtps00360 (Undocumented) SBML MML
dvl00360 Desulfovibrio vulgaris DP4 SBML MML
dvu00360 Desulfovibrio vulgaris Hildenborough SBML MML
dvvi00360 (Undocumented) SBML MML
eacp00360 (Undocumented) SBML MML
eath00360 Arabidopsis thaliana (thale cress) (EST) SBML MML
eba00360 Aromatoleum aromaticum EbN1 SBML MML
ebna00360 Brassica napus (rape) (EST) SBML MML
ebvl00360 Beta vulgaris (beet) (EST) SBML MML
eca00360 Erwinia carotovora SBML MML
ecan00360 Capsicum annuum (chile pepper) (EST) SBML MML
ecc00360 Escherichia coli CFT073 (UPEC) SBML MML
ecd00360 Escherichia coli K-12 DH10B SBML MML
ece00360 Escherichia coli O157 EDL933 (EHEC) SBML MML
ech00360 Ehrlichia chaffeensis SBML MML
eci00360 Escherichia coli UTI89 (UPEC) SBML MML
ecj00360 Escherichia coli K-12 W3110 SBML MML
ecl00360 Escherichia coli ATCC 8739 SBML MML
ecm00360 Escherichia coli SECEC SBML MML
ecn00360 Ehrlichia canis SBML MML
eco00360 Escherichia coli K-12 MG1655 SBML MML
ecp00360 Escherichia coli 536 (UPEC) SBML MML
ecs00360 Escherichia coli O157 Sakai (EHEC) SBML MML
ecsi00360 Citrus sinensis (Valencia orange) (EST) SBML MML
ecsv00360 Ciona savignyi (EST) SBML MML
ecv00360 Escherichia coli APEC O1 SBML MML
ecw00360 Escherichia coli E24377A SBML MML
ecx00360 Escherichia coli HS SBML MML
eees00360 Euphorbia esula (leafy spurge) (EST) SBML MML
efa00360 Enterococcus faecalis SBML MML
efar00360 Festuca arundinacea (tall fescue) (EST) SBML MML
egar00360 Gossypium arboreum (tree cotton) (EST) SBML MML
eghi00360 Gossypium hirsutum (upland cotton) (EST) SBML MML
egma00360 Glycine max (soybean) (EST) SBML MML
egra00360 Gossypium raimondii (EST) SBML MML
ehan00360 Helianthus annuus (sunflower) (EST) SBML MML
ehi00360 Entamoeba histolytica SBML MML
ehvu00360 Hordeum vulgare (barley) (EST) SBML MML
eini00360 Ipomoea nil (Japanese morning glory) (EST) SBML MML
eli00360 Erythrobacter litoralis SBML MML
elja00360 Lotus japonicus (lotus) (EST) SBML MML
elpe00360 Lactuca perennis (blue lettuce) (EST) SBML MML
elsi00360 Lactuca saligna (willow-leaf lettuce) (EST) SBML MML
elst00360 Lactuca sativa (lettuce) (EST) SBML MML
elvi00360 Lactuca virosa (wild lettuce) (EST) SBML MML
emec00360 Manihot esculenta (cassava) (EST) SBML MML
emte00360 Molgula tectiformis (EST) SBML MML
emtr00360 Medicago truncatula (barrel medic) (EST) SBML MML
enbe00360 Nicotiana benthamiana (EST) SBML MML
ent00360 Enterobacter sp. 638 SBML MML
enta00360 Nicotiana tabacum (tobacco) (EST) SBML MML
eosa00360 Oryza sativa (rice) (EST) SBML MML
eosi00360 Oryza sativa indica (Indian rice) (EST) SBML MML
eosj00360 Oryza sativa japonica (Japanese rice) (EST) SBML MML
epgl00360 Picea glauca (white spruce) (EST) SBML MML
epop00360 Populus trichocarpa (black cottonwood) (EST) SBML MML
eppa00360 (Undocumented) SBML MML
eppi00360 Pinus pinaster (maritime pine) (EST) SBML MML
eppp00360 Physcomitrella patens subsp. patens (EST) SBML MML
epps00360 Prunus persica (peach) (EST) SBML MML
epsi00360 Picea sitchensis (sitka spruce) (EST) SBML MML
epta00360 Pinus taeda (loblolly pine) (EST) SBML MML
eptp00360 Populus tremula (European aspen) (EST) SBML MML
eru00360 Ehrlichia ruminantium Welgevonden (South Africa) SBML MML
erw00360 Ehrlichia ruminantium Welgevonden (France) SBML MML
esa00360 Enterobacter sakazakii SBML MML
esbi00360 Sorghum bicolor (sorghum) (EST) SBML MML
esi00360 Exiguobacterium sibiricum SBML MML
esja00360 Schistosoma japonicum (fluke) (EST) SBML MML
esly00360 Solanum lycopersicum (tomato) (EST) SBML MML
esof00360 Saccharum officinarum (sugarcane) (EST) SBML MML
espp00360 (Undocumented) SBML MML
espu00360 Strongylocentrotus purpuratus (purple sea urchin) (EST) SBML MML
estu00360 Solanum tuberosum (potato) (EST) SBML MML
eta00360 Erwinia tasmaniensis SBML MML
etae00360 Triticum aestivum (wheat) (EST) SBML MML
evvi00360 Vitis vinifera (wine grape) (EST) SBML MML
ezel00360 (Undocumented) SBML MML
ezma00360 Zea mays (maize) (EST) SBML MML
fal00360 Frankia alni SBML MML
fgr00360 Fusarium graminearum SBML MML
fjo00360 Flavobacterium johnsoniae SBML MML
fma00360 Finegoldia magna SBML MML
fno00360 Fervidobacterium nodosum SBML MML
fnu00360 Fusobacterium nucleatum SBML MML
fph00360 Francisella philomiragia SBML MML
fps00360 Flavobacterium psychrophilum SBML MML
fra00360 Frankia sp. CcI3 SBML MML
fre00360 Frankia sp. EAN1pec SBML MML
fta00360 Francisella tularensis subsp. holarctica FTNF002-00 SBML MML
ftf00360 Francisella tularensis subsp. tularensis FSC 198 SBML MML
fth00360 Francisella tularensis subsp. holarctica OSU18 SBML MML
ftl00360 Francisella tularensis subsp. holarctica LVS SBML MML
ftm00360 Francisella tularensis subsp. mediasiatica FSC147 SBML MML
ftn00360 Francisella tularensis subsp. novicida U112 SBML MML
ftu00360 Francisella tularensis subsp. tularensis SCHU S4 SBML MML
ftw00360 Francisella tularensis subsp. tularensis WY96-3418 SBML MML
gbe00360 Granulobacter bethesdensis SBML MML
gdi00360 Gluconacetobacter diazotrophicus PAl 5 (Brazil) SBML MML
gfo00360 Gramella forsetii SBML MML
gga00360 Gallus gallus (chicken) SBML MML
gka00360 Geobacillus kaustophilus SBML MML
gla00360 Giardia lamblia SBML MML
glo00360 Geobacter lovleyi SBML MML
gme00360 Geobacter metallireducens SBML MML
gox00360 Gluconobacter oxydans SBML MML
gsu00360 Geobacter sulfurreducens SBML MML
gtn00360 Geobacillus thermodenitrificans SBML MML
gur00360 Geobacter uraniumreducens SBML MML
gvi00360 Gloeobacter violaceus SBML MML
hac00360 Helicobacter acinonychis SBML MML
hal00360 Halobacterium sp. NRC-1 SBML MML
har00360 Herminiimonas arsenicoxydans SBML MML
hau00360 Herpetosiphon aurantiacus SBML MML
hbu00360 Hyperthermus butylicus SBML MML
hch00360 Hahella chejuensis SBML MML
hha00360 Halorhodospira halophila SBML MML
hhe00360 Helicobacter hepaticus SBML MML
hin00360 Haemophilus influenzae Rd KW20 (serotype d) SBML MML
hip00360 Haemophilus influenzae PittEE SBML MML
hiq00360 Haemophilus influenzae PittGG SBML MML
hit00360 Haemophilus influenzae 86-028NP (nontypeable) SBML MML
hma00360 Haloarcula marismortui SBML MML
hmo00360 Heliobacterium modesticaldum SBML MML
hne00360 Hyphomonas neptunium SBML MML
hpa00360 Helicobacter pylori HPAG1 SBML MML
hpj00360 Helicobacter pylori J99 SBML MML
hpy00360 Helicobacter pylori 26695 SBML MML
hsa00360 Homo sapiens (human) SBML MML
hsl00360 Halobacterium salinarum R1 SBML MML
hsm00360 Haemophilus somnus 2336 SBML MML
hso00360 Haemophilus somnus 129PT SBML MML
hwa00360 Haloquadratum walsbyi SBML MML
iho00360 Ignicoccus hospitalis SBML MML
ilo00360 Idiomarina loihiensis SBML MML
jan00360 Jannaschia sp. CCS1 SBML MML
kla00360 Kluyveromyces lactis SBML MML
kpn00360 Klebsiella pneumoniae SBML MML
kra00360 Kineococcus radiotolerans SBML MML
krh00360 Kocuria rhizophila SBML MML
lbc00360 Laccaria bicolor SBML MML
lbf00360 Leptospira biflexa serovar Patoc Patoc 1 (Ames) SBML MML
lbi00360 Leptospira biflexa serovar Patoc Patoc 1 (Paris) SBML MML
lbj00360 Leptospira borgpetersenii JB197 SBML MML
lbl00360 Leptospira borgpetersenii L550 SBML MML
lbr00360 Lactobacillus brevis SBML MML
lca00360 Lactobacillus casei ATCC 334 SBML MML
lch00360 Leptothrix cholodnii SBML MML
lci00360 Leuconostoc citreum SBML MML
lfe00360 Lactobacillus fermentum SBML MML
lic00360 Leptospira interrogans serovar Copenhageni SBML MML
lil00360 Leptospira interrogans serovar lai SBML MML
lin00360 Listeria innocua SBML MML
lip00360 Lawsonia intracellularis SBML MML
lla00360 Lactococcus lactis subsp. lactis IL1403 SBML MML
llc00360 Lactococcus lactis subsp. cremoris SK11 SBML MML
llm00360 Lactococcus lactis subsp. cremoris MG1363 SBML MML
lma00360 Leishmania major SBML MML
lme00360 Leuconostoc mesenteroides SBML MML
lmf00360 Listeria monocytogenes F2365 SBML MML
lmo00360 Listeria monocytogenes EGD-e SBML MML
lpc00360 Legionella pneumophila Corby SBML MML
lpf00360 Legionella pneumophila Lens SBML MML
lpl00360 Lactobacillus plantarum WCFS1 SBML MML
lpn00360 Legionella pneumophila Philadelphia 1 SBML MML
lpp00360 Legionella pneumophila Paris SBML MML
lre00360 Lactobacillus reuteri DSM 20016 SBML MML
lsa00360 Lactobacillus sakei SBML MML
lsl00360 Lactobacillus salivarius SBML MML
lsp00360 Lysinibacillus sphaericus SBML MML
lwe00360 Listeria welshimeri SLCC5334 SBML MML
lxx00360 Leifsonia xyli xyli CTCB07 SBML MML
mab00360 Mycobacterium abscessus ATCC 19977T SBML MML
mac00360 Methanosarcina acetivorans SBML MML
mae00360 Methanococcus aeolicus SBML MML
mag00360 Magnetospirillum magneticum SBML MML
maq00360 Marinobacter aquaeolei SBML MML
mar00360 Microcystis aeruginosa SBML MML
mav00360 Mycobacterium avium 104 SBML MML
mba00360 Methanosarcina barkeri SBML MML
mbb00360 Mycobacterium bovis BCG Pasteur 1173P2 SBML MML
mbn00360 Candidatus Methanoregula boonei SBML MML
mbo00360 Mycobacterium bovis AF2122/97 SBML MML
mbr00360 Monosiga brevicollis SBML MML
mbu00360 Methanococcoides burtonii SBML MML
mca00360 Methylococcus capsulatus SBML MML
mcc00360 Macaca mulatta (rhesus monkey) SBML MML
mdo00360 Monodelphis domestica (opossum) SBML MML
mem00360 Methanoculleus marisnigri SBML MML
mes00360 Mesorhizobium sp. BNC1 SBML MML
met00360 Methylobacterium sp. 4-46 SBML MML
mex00360 Methylobacterium extorquens SBML MML
mfa00360 Methylobacillus flagellatus SBML MML
mgi00360 Mycobacterium gilvum SBML MML
mgl00360 Malassezia globosa SBML MML
mgm00360 Magnetococcus sp. MC-1 SBML MML
mgr00360 Magnaporthe grisea SBML MML
mhu00360 Methanospirillum hungatei SBML MML
mja00360 Methanococcus jannaschii SBML MML
mjl00360 Mycobacterium sp. JLS SBML MML
mka00360 Methanopyrus kandleri SBML MML
mkm00360 Mycobacterium sp. KMS SBML MML
mla00360 Methanocorpusculum labreanum SBML MML
mle00360 Mycobacterium leprae TN SBML MML
mlo00360 Mesorhizobium loti SBML MML
mma00360 Methanosarcina mazei SBML MML
mmc00360 Mycobacterium sp. MCS SBML MML
mmi00360 Mycobacterium marinum M SBML MML
mmp00360 Methanococcus maripaludis S2 SBML MML
mmq00360 Methanococcus maripaludis C5 SBML MML
mmr00360 Maricaulis maris SBML MML
mms00360 Minibacterium massiliensis SBML MML
mmu00360 Mus musculus (mouse) SBML MML
mmw00360 Marinomonas sp. MWYL1 SBML MML
mmx00360 Methanococcus maripaludis C6 SBML MML
mmz00360 Methanococcus maripaludis C7 SBML MML
mpa00360 Mycobacterium avium paratuberculosis SBML MML
mpe00360 Mycoplasma penetrans SBML MML
mpt00360 Methylibium petroleiphilum SBML MML
mra00360 Mycobacterium tuberculosis H37Ra SBML MML
mrd00360 Methylobacterium radiotolerans SBML MML
mse00360 Metallosphaera sedula SBML MML
msi00360 Methanobrevibacter smithii ATCC 35061 SBML MML
msm00360 Mycobacterium smegmatis SBML MML
mst00360 Methanosphaera stadtmanae SBML MML
msu00360 Mannheimia succiniciproducens SBML MML
mta00360 Moorella thermoacetica SBML MML
mtc00360 Mycobacterium tuberculosis CDC1551 SBML MML
mtf00360 Mycobacterium tuberculosis F11 SBML MML
mth00360 Methanobacterium thermoautotrophicum SBML MML
mtp00360 Methanosaeta thermophila SBML MML
mtu00360 Mycobacterium tuberculosis H37Rv SBML MML
mul00360 Mycobacterium ulcerans SBML MML
mva00360 Mycobacterium vanbaalenii SBML MML
mvn00360 Methanococcus vannielii SBML MML
mxa00360 Myxococcus xanthus SBML MML
nar00360 Novosphingobium aromaticivorans SBML MML
nca00360 Nocardioides sp. JS614 SBML MML
ncr00360 Neurospora crassa SBML MML
net00360 Nitrosomonas eutropha SBML MML
neu00360 Nitrosomonas europaea SBML MML
nfa00360 Nocardia farcinica SBML MML
ngo00360 Neisseria gonorrhoeae SBML MML
nha00360 Nitrobacter hamburgensis SBML MML
nis00360 Nitratiruptor sp. SB155-2 SBML MML
nma00360 Neisseria meningitidis Z2491 (serogroup A) SBML MML
nmc00360 Neisseria meningitidis FAM18 (serogroup C) SBML MML
nme00360 Neisseria meningitidis MC58 (serogroup B) SBML MML
nmn00360 Neisseria meningitidis 053442 (serogroup C) SBML MML
nmr00360 Nitrosopumilus maritimus SBML MML
nmu00360 Nitrosospira multiformis SBML MML
noc00360 Nitrosococcus oceani SBML MML
nph00360 Natronomonas pharaonis SBML MML
npu00360 Nostoc punctiforme SBML MML
nve00360 Nematostella vectensis (sea anemone) SBML MML
nwi00360 Nitrobacter winogradskyi SBML MML
oaa00360 Ornithorhynchus anatinus (platypus) SBML MML
oan00360 Ochrobactrum anthropi SBML MML
oih00360 Oceanobacillus iheyensis SBML MML
olu00360 Ostreococcus lucimarinus SBML MML
osa00360 Oryza sativa japonica (Japanese rice) SBML MML
ote00360 Opitutus terrae SBML MML
pab00360 Pyrococcus abyssi SBML MML
pac00360 Propionibacterium acnes SBML MML
pae00360 Pseudomonas aeruginosa PAO1 SBML MML
pai00360 Pyrobaculum aerophilum SBML MML
pan00360 Podospora anserina SBML MML
pap00360 Pseudomonas aeruginosa PA7 SBML MML
par00360 Psychrobacter arcticum SBML MML
pas00360 Pyrobaculum arsenaticum SBML MML
pat00360 Pseudoalteromonas atlantica SBML MML
pau00360 Pseudomonas aeruginosa UCBPP-PA14 SBML MML
pca00360 Pelobacter carbinolicus SBML MML
pcl00360 Pyrobaculum calidifontis SBML MML
pcr00360 Psychrobacter cryohalolentis SBML MML
pde00360 Paracoccus denitrificans SBML MML
pdi00360 Parabacteroides distasonis SBML MML
pen00360 Pseudomonas entomophila SBML MML
pfa00360 Plasmodium falciparum 3D7 SBML MML
pfl00360 Pseudomonas fluorescens Pf-5 SBML MML
pfo00360 Pseudomonas fluorescens Pf0-1 SBML MML
pfu00360 Pyrococcus furiosus SBML MML
pgn00360 Porphyromonas gingivalis ATCC 33277 SBML MML
pha00360 Pseudoalteromonas haloplanktis SBML MML
pho00360 Pyrococcus horikoshii SBML MML
pic00360 Pichia stipitis SBML MML
pin00360 Psychromonas ingrahamii SBML MML
pis00360 Pyrobaculum islandicum SBML MML
pla00360 Parvibaculum lavamentivorans SBML MML
plt00360 Pelodictyon luteolum SBML MML
plu00360 Photorhabdus luminescens SBML MML
pma00360 Prochlorococcus marinus SS120 SBML MML
pmb00360 Prochlorococcus marinus AS9601 SBML MML
pmc00360 Prochlorococcus marinus MIT 9515 SBML MML
pme00360 Prochlorococcus marinus NATL1A SBML MML
pmf00360 Prochlorococcus marinus MIT 9303 SBML MML
pmg00360 Prochlorococcus marinus MIT 9301 SBML MML
pmh00360 Prochlorococcus marinus MIT 9215 SBML MML
pmi00360 Prochlorococcus marinus MIT9312 SBML MML
pmj00360 Prochlorococcus marinus MIT 9211 SBML MML
pmm00360 Prochlorococcus marinus MED4 SBML MML
pmn00360 Prochlorococcus marinus NATL2A SBML MML
pmo00360 Petrotoga mobilis SBML MML
pmt00360 Prochlorococcus marinus MIT9313 SBML MML
pmu00360 Pasteurella multocida SBML MML
pmy00360 Pseudomonas mendocina SBML MML
pna00360 Polaromonas naphthalenivorans SBML MML
pne00360 Polynucleobacter necessarius SBML MML
pnu00360 Polynucleobacter sp. QLW-P1DMWA-1 SBML MML
pol00360 Polaromonas sp. JS666 SBML MML
ppd00360 Pelobacter propionicus SBML MML
ppf00360 Pseudomonas putida F1 SBML MML
ppg00360 Pseudomonas putida GB-1 SBML MML
ppp00360 Physcomitrella patens subsp. patens SBML MML
ppr00360 Photobacterium profundum SBML MML
ppu00360 Pseudomonas putida KT2440 SBML MML
ppw00360 Pseudomonas putida W619 SBML MML
prw00360 Psychrobacter sp. PRwf-1 SBML MML
psa00360 Pseudomonas stutzeri SBML MML
psb00360 Pseudomonas syringae pv. syringae B728a SBML MML
psp00360 Pseudomonas syringae pv. phaseolicola 1448A SBML MML
pst00360 Pseudomonas syringae pv. tomato DC3000 SBML MML
pth00360 Pelotomaculum thermopropionicum SBML MML
pto00360 Picrophilus torridus SBML MML
ptr00360 Pan troglodytes (chimpanzee) SBML MML
pub00360 Candidatus Pelagibacter ubique SBML MML
pvi00360 Prosthecochloris vibrioformis SBML MML
pyo00360 Plasmodium yoelii SBML MML
rba00360 Rhodopirellula baltica SBML MML
rbe00360 Rickettsia bellii RML369-C SBML MML
rbo00360 Rickettsia bellii OSU 85-389 SBML MML
rca00360 Roseiflexus castenholzii DSM13941 SBML MML
rci00360 Uncultured methanogenic archaeon RC-I SBML MML
rde00360 Roseobacter denitrificans SBML MML
rec00360 Rhizobium etli CIAT 652 SBML MML
reh00360 Ralstonia eutropha H16 SBML MML
ret00360 Rhizobium etli CFN 42 SBML MML
reu00360 Ralstonia eutropha JMP134 SBML MML
rfe00360 Rickettsia felis SBML MML
rfr00360 Rhodoferax ferrireducens SBML MML
rha00360 Rhodococcus sp. RHA1 SBML MML
rle00360 Rhizobium leguminosarum SBML MML
rma00360 Candidatus Ruthia magnifica SBML MML
rme00360 Ralstonia metallidurans SBML MML
rno00360 Rattus norvegicus (rat) SBML MML
rpa00360 Rhodopseudomonas palustris CGA009 SBML MML
rpb00360 Rhodopseudomonas palustris HaA2 SBML MML
rpc00360 Rhodopseudomonas palustris BisB18 SBML MML
rpd00360 Rhodopseudomonas palustris BisB5 SBML MML
rpe00360 Rhodopseudomonas palustris BisA53 SBML MML
rpt00360 Rhodopseudomonas palustris TIE-1 SBML MML
rrs00360 Roseiflexus sp. RS-1 SBML MML
rru00360 Rhodospirillum rubrum SBML MML
rsa00360 Renibacterium salmoninarum SBML MML
rsh00360 Rhodobacter sphaeroides ATCC 17029 SBML MML
rso00360 Ralstonia solanacearum SBML MML
rsp00360 Rhodobacter sphaeroides 2.4.1 SBML MML
rsq00360 Rhodobacter sphaeroides ATCC 17025 SBML MML
rxy00360 Rubrobacter xylanophilus SBML MML
saa00360 Staphylococcus aureus USA300 SBML MML
sab00360 Staphylococcus aureus RF122 SBML MML
sac00360 Staphylococcus aureus COL SBML MML
sae00360 Staphylococcus aureus Newman SBML MML
sag00360 Streptococcus agalactiae 2603 (serotype V) SBML MML
sah00360 Staphylococcus aureus JH1 SBML MML
sai00360 Sulfolobus acidocaldarius SBML MML
saj00360 Staphylococcus aureus JH9 SBML MML
sak00360 Streptococcus agalactiae A909 (serotype Ia) SBML MML
sal00360 Sphingopyxis alaskensis SBML MML
sam00360 Staphylococcus aureus MW2 SBML MML
san00360 Streptococcus agalactiae NEM316 (serotype III) SBML MML
sao00360 Staphylococcus aureus NCTC8325 SBML MML
saq00360 Salinispora arenicola SBML MML
sar00360 Staphylococcus aureus MRSA252 SBML MML
sas00360 Staphylococcus aureus MSSA476 SBML MML
sat00360 Syntrophus aciditrophicus SBML MML
sau00360 Staphylococcus aureus N315 SBML MML
sav00360 Staphylococcus aureus Mu50 SBML MML
saw00360 Staphylococcus aureus Mu3 SBML MML
sax00360 Staphylococcus aureus USA300 TCH1516 SBML MML
saz00360 Shewanella amazonensis SBML MML
sbc00360 Shigella boydii CDC 3083-94 SBML MML
sbl00360 Shewanella baltica OS155 SBML MML
sbm00360 Shewanella baltica OS185 SBML MML
sbn00360 Shewanella baltica OS195 SBML MML
sbo00360 Shigella boydii Sb227 SBML MML
sce00360 Saccharomyces cerevisiae SBML MML
scl00360 Sorangium cellulosum SBML MML
sco00360 Streptomyces coelicolor SBML MML
sde00360 Saccharophagus degradans SBML MML
sdn00360 Shewanella denitrificans SBML MML
sdy00360 Shigella dysenteriae SBML MML
sec00360 Salmonella enterica subsp. enterica serovar Choleraesuis SBML MML
sen00360 Saccharopolyspora erythraea SBML MML
sep00360 Staphylococcus epidermidis ATCC 12228 SBML MML
ser00360 Staphylococcus epidermidis RP62A SBML MML
ses00360 Salmonella enterica subsp. arizonae SBML MML
sfl00360 Shigella flexneri 301 (serotype 2a) SBML MML
sfr00360 Shewanella frigidimarina SBML MML
sfu00360 Syntrophobacter fumaroxidans SBML MML
sfv00360 Shigella flexneri 8401 (serotype 5b) SBML MML
sfx00360 Shigella flexneri 2457T (serotype 2a) SBML MML
sgl00360 Sodalis glossinidius SBML MML
sgo00360 Streptococcus gordonii SBML MML
sgr00360 Streptomyces griseus SBML MML
sha00360 Staphylococcus haemolyticus SBML MML
she00360 Shewanella sp. MR-4 SBML MML
shl00360 Shewanella halifaxensis SBML MML
shm00360 Shewanella sp. MR-7 SBML MML
shn00360 Shewanella sp. ANA-3 SBML MML
shw00360 Shewanella sp. W3-18-1 SBML MML
sil00360 Ruegeria pomeroyi SBML MML
sit00360 Silicibacter sp. TM1040 SBML MML
slo00360 Shewanella loihica SBML MML
sma00360 Streptomyces avermitilis SBML MML
smd00360 Sinorhizobium medicae SBML MML
sme00360 Sinorhizobium meliloti SBML MML
sml00360 Stenotrophomonas maltophilia SBML MML
smr00360 Staphylothermus marinus SBML MML
smu00360 Streptococcus mutans SBML MML
son00360 Shewanella oneidensis SBML MML
spa00360 Streptococcus pyogenes MGAS10394 (serotype M6) SBML MML
spb00360 Streptococcus pyogenes MGAS6180 (serotype M28) SBML MML
spc00360 Shewanella putrefaciens SBML MML
spd00360 Streptococcus pneumoniae D39 SBML MML
spe00360 Serratia proteamaculans SBML MML
spf00360 Streptococcus pyogenes Manfredo (serotype M5) SBML MML
spg00360 Streptococcus pyogenes MGAS315 (serotype M3) SBML MML
sph00360 Streptococcus pyogenes MGAS10270 (serotype M2) SBML MML
spi00360 Streptococcus pyogenes MGAS10750 (serotype M4) SBML MML
spj00360 Streptococcus pyogenes MGAS2096 (serotype M12) SBML MML
spk00360 Streptococcus pyogenes MGAS9429 (serotype M12) SBML MML
spl00360 Shewanella pealeana SBML MML
spm00360 Streptococcus pyogenes MGAS8232 (serotype M18) SBML MML
spn00360 Streptococcus pneumoniae TIGR4 SBML MML
spo00360 Schizosaccharomyces pombe SBML MML
spq00360 Salmonella enterica subsp. enterica serovar Paratyphi B SBML MML
spr00360 Streptococcus pneumoniae R6 SBML MML
sps00360 Streptococcus pyogenes SSI-1 (serotype M3) SBML MML
spt00360 Salmonella enterica subsp. enterica serovar Paratyphi A SBML MML
spu00360 Strongylocentrotus purpuratus (purple sea urchin) SBML MML
spw00360 Streptococcus pneumoniae CGSP14 (serotype 14) SBML MML
spy00360 Streptococcus pyogenes SF370 (serotype M1) SBML MML
spz00360 Streptococcus pyogenes MGAS5005 (serotype M1) SBML MML
sru00360 Salinibacter ruber SBML MML
ssa00360 Streptococcus sanguinis SBML MML
ssc00360 Sus scrofa (pig) SBML MML
sse00360 Shewanella sediminis SBML MML
ssn00360 Shigella sonnei SBML MML
sso00360 Sulfolobus solfataricus SBML MML
ssp00360 Staphylococcus saprophyticus SBML MML
ssu00360 Streptococcus suis 05ZYH33 SBML MML
ssv00360 Streptococcus suis 98HAH33 SBML MML
ste00360 Streptococcus thermophilus LMD-9 SBML MML
sth00360 Symbiobacterium thermophilum SBML MML
stm00360 Salmonella typhimurium LT2 SBML MML
sto00360 Sulfolobus tokodaii SBML MML
stp00360 Salinispora tropica SBML MML
stt00360 Salmonella enterica subsp. enterica serovar Typhi Ty2 SBML MML
sty00360 Salmonella enterica subsp. enterica serovar Typhi CT18 SBML MML
sul00360 Sulfurihydrogenibium sp. YO3AOP1 SBML MML
sun00360 Sulfurovum sp. NBC37-1 SBML MML
sus00360 Solibacter usitatus SBML MML
swd00360 Shewanella woodyi ATCC 51908 SBML MML
swi00360 Sphingomonas wittichii SBML MML
swo00360 Syntrophomonas wolfei SBML MML
syd00360 Synechococcus sp. CC9605 SBML MML
sye00360 Synechococcus sp. CC9902 SBML MML
syf00360 Synechococcus elongatus PCC7942 SBML MML
syg00360 Synechococcus sp. CC9311 SBML MML
syn00360 Synechocystis sp. PCC6803 SBML MML
syp00360 Synechococcus sp. PCC7002 SBML MML
syr00360 Synechococcus sp. RCC307 SBML MML
syw00360 Synechococcus sp. WH8102 SBML MML
syx00360 Synechococcus sp. WH7803 SBML MML
tac00360 Thermoplasma acidophilum SBML MML
tan00360 Theileria annulata SBML MML
tbd00360 Thiobacillus denitrificans SBML MML
tbr00360 Trypanosoma brucei SBML MML
tca00360 Tribolium castaneum (red flour beetle) SBML MML
tcr00360 Trypanosoma cruzi SBML MML
tcx00360 Thiomicrospira crunogena SBML MML
tdn00360 Thiomicrospira denitrificans SBML MML
tel00360 Thermosynechococcus elongatus SBML MML
ter00360 Trichodesmium erythraeum SBML MML
tet00360 Tetrahymena thermophila SBML MML
tex00360 Thermoanaerobacter sp. X514 SBML MML
tfu00360 Thermobifida fusca SBML MML
tko00360 Thermococcus kodakaraensis SBML MML
tle00360 Thermotoga lettingae SBML MML
tma00360 Thermotoga maritima SBML MML
tme00360 Thermosipho melanesiensis SBML MML
tne00360 Thermoproteus neutrophilus SBML MML
tpd00360 Thermoanaerobacter pseudethanolicus SBML MML
tpe00360 Thermofilum pendens SBML MML
tpt00360 Thermotoga petrophila SBML MML
tpv00360 Theileria parva SBML MML
trq00360 Thermotoga sp. RQ2 SBML MML
tte00360 Thermoanaerobacter tengcongensis SBML MML
tth00360 Thermus thermophilus HB27 SBML MML
ttj00360 Thermus thermophilus HB8 SBML MML
tva00360 Trichomonas vaginalis SBML MML
tvo00360 Thermoplasma volcanium SBML MML
uma00360 Ustilago maydis SBML MML
vch00360 Vibrio cholerae O1 SBML MML
vco00360 Vibrio cholerae O395 SBML MML
vei00360 Verminephrobacter eiseniae SBML MML
vfi00360 Vibrio fischeri SBML MML
vha00360 Vibrio harveyi SBML MML
vok00360 Candidatus Vesicomyosocius okutanii SBML MML
vpa00360 Vibrio parahaemolyticus SBML MML
vpo00360 Vanderwaltozyma polyspora SBML MML
vvu00360 Vibrio vulnificus CMCP6 SBML MML
vvy00360 Vibrio vulnificus YJ016 SBML MML
wsu00360 Wolinella succinogenes SBML MML
xac00360 Xanthomonas axonopodis SBML MML
xau00360 Xanthobacter autotrophicus SBML MML
xcb00360 Xanthomonas campestris pv. campestris 8004 SBML MML
xcc00360 Xanthomonas campestris pv. campestris ATCC 33913 SBML MML
xcv00360 Xanthomonas campestris pv. vesicatoria SBML MML
xfa00360 Xylella fastidiosa 9a5c SBML MML
xfm00360 Xylella fastidiosa M12 SBML MML
xfn00360 Xylella fastidiosa M23 SBML MML
xft00360 Xylella fastidiosa Temecula1 SBML MML
xla00360 Xenopus laevis (African clawed frog) SBML MML
xom00360 Xanthomonas oryzae MAFF311018 SBML MML
xoo00360 Xanthomonas oryzae KACC10331 SBML MML
xtr00360 Xenopus tropicalis (western clawed frog) SBML MML
yen00360 Yersinia enterocolitica SBML MML
yli00360 Yarrowia lipolytica SBML MML
ypa00360 Yersinia pestis Antiqua SBML MML
ype00360 Yersinia pestis CO92 SBML MML
ypg00360 Yersinia pestis Angola SBML MML
ypi00360 Yersinia pseudotuberculosis IP31758 SBML MML
ypk00360 Yersinia pestis KIM SBML MML
ypm00360 Yersinia pestis Mediaevails SBML MML
ypn00360 Yersinia pestis Nepal516 SBML MML
ypp00360 Yersinia pestis Pestoides SBML MML
yps00360 Yersinia pseudotuberculosis IP32953 SBML MML
ypy00360 Yersinia pseudotuberculosis YPIII SBML MML
zmo00360 Zymomonas mobilis SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.