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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Pathway 00120: (Undocumented)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkOrganismSBMLMMLDownload Applet
aae00120 Aquifex aeolicus SBML MML
aau00120 Arthrobacter aurescens SBML MML
aav00120 Acidovorax avenae SBML MML
aba00120 Acidobacteria bacterium SBML MML
abc00120 Acinetobacter baumannii ACICU SBML MML
abm00120 Acinetobacter baumannii SDF SBML MML
abo00120 Alcanivorax borkumensis SBML MML
abu00120 Arcobacter butzleri SBML MML
aby00120 Acinetobacter baumannii AYE SBML MML
acb00120 Acinetobacter baumannii ATCC 17978 SBML MML
ace00120 Acidothermus cellulolyticus SBML MML
aci00120 Acinetobacter sp. ADP1 SBML MML
acl00120 Acholeplasma laidlawii SBML MML
acr00120 Acidiphilium cryptum JF-5 SBML MML
ade00120 Anaeromyxobacter dehalogenans 2CP-C SBML MML
aeh00120 Alkalilimnicola ehrlichei SBML MML
afm00120 Aspergillus fumigatus SBML MML
afu00120 Archaeoglobus fulgidus SBML MML
afw00120 Anaeromyxobacter sp. Fw109-5 SBML MML
aga00120 Anopheles gambiae (mosquito) SBML MML
ago00120 Ashbya gossypii (Eremothecium gossypii) SBML MML
aha00120 Aeromonas hydrophila SBML MML
ajs00120 Acidovorax sp. JS42 SBML MML
amr00120 Acaryochloris marina SBML MML
amt00120 Alkaliphilus metalliredigens SBML MML
ana00120 Anabaena sp. PCC7120 SBML MML
ang00120 Aspergillus niger SBML MML
ani00120 Aspergillus nidulans SBML MML
aoe00120 Alkaliphilus oremlandii SBML MML
aor00120 Aspergillus oryzae SBML MML
apa00120 Actinobacillus pleuropneumoniae AP76 (serotype 7) SBML MML
ape00120 Aeropyrum pernix SBML MML
apj00120 Actinobacillus pleuropneumoniae JL03 (serotype 3) SBML MML
apl00120 Actinobacillus pleuropneumoniae L20 (serotype 5b) SBML MML
art00120 Arthrobacter sp. FB24 SBML MML
asa00120 Aeromonas salmonicida SBML MML
asu00120 Actinobacillus succinogenes SBML MML
atc00120 Agrobacterium tumefaciens C58 (Cereon) SBML MML
ath00120 Arabidopsis thaliana (thale cress) SBML MML
atu00120 Agrobacterium tumefaciens C58 SBML MML
ava00120 Anabaena variabilis SBML MML
azc00120 Azorhizobium caulinodans SBML MML
azo00120 Azoarcus sp. BH72 SBML MML
baa00120 Bacillus anthracis A2012 SBML MML
bac00120 Burkholderia ambifaria MC40-6 SBML MML
bad00120 Bifidobacterium adolescentis SBML MML
bam00120 Burkholderia cepacia SBML MML
ban00120 Bacillus anthracis Ames SBML MML
bar00120 Bacillus anthracis Ames 0581 SBML MML
bat00120 Bacillus anthracis Sterne SBML MML
bav00120 Bordetella avium SBML MML
bay00120 Bacillus amyloliquefaciens SBML MML
bba00120 Bdellovibrio bacteriovorus SBML MML
bbk00120 Bartonella bacilliformis SBML MML
bbr00120 Bordetella bronchiseptica SBML MML
bbt00120 Bradyrhizobium sp. BTAi1 SBML MML
bca00120 Bacillus cereus ATCC 10987 SBML MML
bce00120 Bacillus cereus ATCC 14579 SBML MML
bch00120 Burkholderia cenocepacia HI2424 SBML MML
bcl00120 Bacillus clausii SBML MML
bcm00120 Burkholderia cenocepacia MC0-3 SBML MML
bcn00120 Burkholderia cenocepacia AU1054 SBML MML
bcs00120 Brucella canis SBML MML
bcy00120 Bacillus cytotoxis NVH 391-98 SBML MML
bcz00120 Bacillus cereus ZK SBML MML
bfr00120 Bacteroides fragilis YCH46 SBML MML
bfs00120 Bacteroides fragilis NCTC9343 SBML MML
bha00120 Bacillus halodurans SBML MML
bhe00120 Bartonella henselae SBML MML
bid00120 Beijerinckia indica SBML MML
bja00120 Bradyrhizobium japonicum SBML MML
bld00120 Bacillus licheniformis DSM13 SBML MML
bli00120 Bacillus licheniformis ATCC 14580 SBML MML
blj00120 Bifidobacterium longum DJO10A SBML MML
blo00120 Bifidobacterium longum NCC2705 SBML MML
bma00120 Burkholderia mallei ATCC 23344 SBML MML
bmb00120 Brucella abortus 9-941 SBML MML
bmc00120 Brucella abortus S19 SBML MML
bme00120 Brucella melitensis 16M SBML MML
bmf00120 Brucella melitensis biovar Abortus SBML MML
bml00120 Burkholderia mallei NCTC 10229 SBML MML
bmn00120 Burkholderia mallei NCTC 10247 SBML MML
bms00120 Brucella suis 1330 SBML MML
bmt00120 Brucella suis ATCC 23445 SBML MML
bmu00120 Burkholderia multivorans ATCC 17616 (JGI) SBML MML
bmv00120 Burkholderia mallei SAVP1 SBML MML
bmy00120 Brugia malayi (filaria) SBML MML
bov00120 Brucella ovis SBML MML
bpa00120 Bordetella parapertussis SBML MML
bpd00120 Burkholderia pseudomallei 668 SBML MML
bpe00120 Bordetella pertussis SBML MML
bph00120 Burkholderia phymatum SBML MML
bpl00120 Burkholderia pseudomallei 1106a SBML MML
bpm00120 Burkholderia pseudomallei 1710b SBML MML
bps00120 Burkholderia pseudomallei K96243 SBML MML
bpt00120 Bordetella petrii SBML MML
bpu00120 Bacillus pumilus SBML MML
bqu00120 Bartonella quintana SBML MML
bra00120 Bradyrhizobium sp. ORS278 SBML MML
bsu00120 Bacillus subtilis SBML MML
bta00120 Bos taurus (cow) SBML MML
bte00120 Burkholderia thailandensis SBML MML
bth00120 Bacteroides thetaiotaomicron SBML MML
btk00120 Bacillus thuringiensis 97-27 SBML MML
btl00120 Bacillus thuringiensis Al Hakam SBML MML
btr00120 Bartonella tribocorum SBML MML
bur00120 Burkholderia sp. 383 SBML MML
bvi00120 Burkholderia vietnamiensis SBML MML
bvu00120 Bacteroides vulgatus SBML MML
bwe00120 Bacillus weihenstephanensis SBML MML
bxe00120 Burkholderia xenovorans SBML MML
cac00120 Clostridium acetobutylicum SBML MML
cak00120 Caulobacter sp. K31 SBML MML
cal00120 Candida albicans SBML MML
cau00120 Chloroflexus aurantiacus SBML MML
cba00120 Clostridium botulinum A ATCC 19397 SBML MML
cbb00120 Clostridium botulinum B1 Okra SBML MML
cbd00120 Coxiella burnetii Dugway 5J108-111 SBML MML
cbe00120 Clostridium beijerinckii SBML MML
cbf00120 Clostridium botulinum F Langeland SBML MML
cbh00120 Clostridium botulinum A Hall SBML MML
cbk00120 Clostridium botulinum B Eklund 17B SBML MML
cbl00120 Clostridium botulinum A3 Loch Maree SBML MML
cbo00120 Clostridium botulinum A ATCC 3502 SBML MML
cbs00120 Coxiella burnetii RSA 331 SBML MML
cbu00120 Coxiella burnetii RSA 493 SBML MML
cco00120 Campylobacter concisus 13826 SBML MML
ccr00120 Caulobacter crescentus CB15 SBML MML
ccv00120 Campylobacter curvus SBML MML
cdf00120 Clostridium difficile SBML MML
cdi00120 Corynebacterium diphtheriae SBML MML
cef00120 Corynebacterium efficiens SBML MML
cel00120 Caenorhabditis elegans (nematode) SBML MML
cfa00120 Canis familiaris (dog) SBML MML
cff00120 Campylobacter fetus SBML MML
cgb00120 Corynebacterium glutamicum ATCC 13032 (Bielefeld) SBML MML
cgl00120 Corynebacterium glutamicum ATCC 13032 (Kyowa Hakko) SBML MML
cgr00120 Candida glabrata SBML MML
cgt00120 Corynebacterium glutamicum R SBML MML
chu00120 Cytophaga hutchinsonii SBML MML
chy00120 Carboxydothermus hydrogenoformans SBML MML
cja00120 Cellvibrio japonicus SBML MML
cjk00120 Corynebacterium jeikeium SBML MML
ckl00120 Clostridium kluyveri DSM 555 SBML MML
cko00120 Citrobacter koseri ATCC BAA-895 SBML MML
cma00120 Caldivirga maquilingensis SBML MML
cme00120 Cyanidioschyzon merolae SBML MML
cmi00120 Clavibacter michiganensis subsp. michiganensis SBML MML
cms00120 Clavibacter michiganensis subsp. sepedonicus SBML MML
cnb00120 Cryptococcus neoformans B-3501A SBML MML
cne00120 Cryptococcus neoformans JEC21 SBML MML
cno00120 Clostridium novyi SBML MML
cpe00120 Clostridium perfringens 13 SBML MML
cpf00120 Clostridium perfringens ATCC 13124 SBML MML
cph00120 Chlorobium phaeobacteroides DSM 266 SBML MML
cpr00120 Clostridium perfringens SM101 SBML MML
cps00120 Colwellia psychrerythraea SBML MML
cpy00120 Clostridium phytofermentans SBML MML
cre00120 Chlamydomonas reinhardtii SBML MML
csa00120 Chromohalobacter salexigens SBML MML
csc00120 Caldicellulosiruptor saccharolyticus SBML MML
ctc00120 Clostridium tetani E88 SBML MML
cte00120 Chlorobaculum tepidum SBML MML
cti00120 Cupriavidus taiwanensis SBML MML
cur00120 Corynebacterium urealyticum SBML MML
cvi00120 Chromobacterium violaceum SBML MML
cyt00120 Cyanothece sp. ATCC 51142 SBML MML
daag00120 (Undocumented) SBML MML
dac00120 Delftia acidovorans SBML MML
dame00120 (Undocumented) SBML MML
dar00120 Dechloromonas aromatica SBML MML
dau00120 Candidatus Desulforudis audaxviator SBML MML
dbmo00120 Bombyx mori (silkmoth) SBML MML
dcbr00120 (Undocumented) SBML MML
dcin00120 (Undocumented) SBML MML
dde00120 Desulfovibrio desulfuricans G20 SBML MML
ddi00120 Dictyostelium discoideum SBML MML
decb00120 (Undocumented) SBML MML
dfru00120 Fugu rubripes (Japanese puffer fish) SBML MML
dge00120 Deinococcus geothermalis SBML MML
dha00120 Debaryomyces hansenii SBML MML
dkwa00120 Kluyveromyces waltii SBML MML
dme00120 Drosophila melanogaster (fruit fly) SBML MML
dol00120 Candidatus Desulfococcus oleovorans SBML MML
dola00120 Oryzias latipes (Japanese medaka) SBML MML
dota00120 Ostreococcus tauri SBML MML
dpkn00120 (Undocumented) SBML MML
dpo00120 Drosophila pseudoobscura pseudoobscura SBML MML
dpop00120 (Undocumented) SBML MML
dps00120 Desulfotalea psychrophila SBML MML
dptm00120 (Undocumented) SBML MML
dra00120 Deinococcus radiodurans SBML MML
dre00120 Danio rerio (zebrafish) SBML MML
drm00120 Desulfotomaculum reducens SBML MML
dsba00120 Saccharomyces bayanus SBML MML
dsh00120 Dinoroseobacter shibae SBML MML
dsmi00120 Saccharomyces mikatae SBML MML
dspd00120 (Undocumented) SBML MML
dsy00120 Desulfitobacterium hafniense Y51 SBML MML
dtni00120 Tetraodon nigroviridis (green spotted puffer) SBML MML
dtps00120 (Undocumented) SBML MML
dvl00120 Desulfovibrio vulgaris DP4 SBML MML
dvu00120 Desulfovibrio vulgaris Hildenborough SBML MML
dvvi00120 (Undocumented) SBML MML
eacp00120 (Undocumented) SBML MML
eath00120 Arabidopsis thaliana (thale cress) (EST) SBML MML
eba00120 Aromatoleum aromaticum EbN1 SBML MML
ebna00120 Brassica napus (rape) (EST) SBML MML
ebvl00120 Beta vulgaris (beet) (EST) SBML MML
eca00120 Erwinia carotovora SBML MML
ecan00120 Capsicum annuum (chile pepper) (EST) SBML MML
ecc00120 Escherichia coli CFT073 (UPEC) SBML MML
ecd00120 Escherichia coli K-12 DH10B SBML MML
ece00120 Escherichia coli O157 EDL933 (EHEC) SBML MML
eci00120 Escherichia coli UTI89 (UPEC) SBML MML
ecj00120 Escherichia coli K-12 W3110 SBML MML
ecl00120 Escherichia coli ATCC 8739 SBML MML
ecm00120 Escherichia coli SECEC SBML MML
eco00120 Escherichia coli K-12 MG1655 SBML MML
ecp00120 Escherichia coli 536 (UPEC) SBML MML
ecs00120 Escherichia coli O157 Sakai (EHEC) SBML MML
ecsi00120 Citrus sinensis (Valencia orange) (EST) SBML MML
ecsv00120 Ciona savignyi (EST) SBML MML
ecu00120 Encephalitozoon cuniculi SBML MML
ecv00120 Escherichia coli APEC O1 SBML MML
ecw00120 Escherichia coli E24377A SBML MML
ecx00120 Escherichia coli HS SBML MML
eees00120 Euphorbia esula (leafy spurge) (EST) SBML MML
efa00120 Enterococcus faecalis SBML MML
efar00120 Festuca arundinacea (tall fescue) (EST) SBML MML
egar00120 Gossypium arboreum (tree cotton) (EST) SBML MML
eghi00120 Gossypium hirsutum (upland cotton) (EST) SBML MML
egma00120 Glycine max (soybean) (EST) SBML MML
egra00120 Gossypium raimondii (EST) SBML MML
ehan00120 Helianthus annuus (sunflower) (EST) SBML MML
ehi00120 Entamoeba histolytica SBML MML
ehvu00120 Hordeum vulgare (barley) (EST) SBML MML
eini00120 Ipomoea nil (Japanese morning glory) (EST) SBML MML
eli00120 Erythrobacter litoralis SBML MML
elja00120 Lotus japonicus (lotus) (EST) SBML MML
elpe00120 Lactuca perennis (blue lettuce) (EST) SBML MML
elsi00120 Lactuca saligna (willow-leaf lettuce) (EST) SBML MML
elst00120 Lactuca sativa (lettuce) (EST) SBML MML
elvi00120 Lactuca virosa (wild lettuce) (EST) SBML MML
emec00120 Manihot esculenta (cassava) (EST) SBML MML
emte00120 Molgula tectiformis (EST) SBML MML
emtr00120 Medicago truncatula (barrel medic) (EST) SBML MML
enbe00120 Nicotiana benthamiana (EST) SBML MML
ent00120 Enterobacter sp. 638 SBML MML
enta00120 Nicotiana tabacum (tobacco) (EST) SBML MML
eosa00120 Oryza sativa (rice) (EST) SBML MML
eosi00120 Oryza sativa indica (Indian rice) (EST) SBML MML
eosj00120 Oryza sativa japonica (Japanese rice) (EST) SBML MML
epgl00120 Picea glauca (white spruce) (EST) SBML MML
epop00120 Populus trichocarpa (black cottonwood) (EST) SBML MML
eppa00120 (Undocumented) SBML MML
eppi00120 Pinus pinaster (maritime pine) (EST) SBML MML
eppp00120 Physcomitrella patens subsp. patens (EST) SBML MML
epps00120 Prunus persica (peach) (EST) SBML MML
epsi00120 Picea sitchensis (sitka spruce) (EST) SBML MML
epta00120 Pinus taeda (loblolly pine) (EST) SBML MML
eptp00120 Populus tremula (European aspen) (EST) SBML MML
eru00120 Ehrlichia ruminantium Welgevonden (South Africa) SBML MML
erw00120 Ehrlichia ruminantium Welgevonden (France) SBML MML
esa00120 Enterobacter sakazakii SBML MML
esbi00120 Sorghum bicolor (sorghum) (EST) SBML MML
esi00120 Exiguobacterium sibiricum SBML MML
esja00120 Schistosoma japonicum (fluke) (EST) SBML MML
esly00120 Solanum lycopersicum (tomato) (EST) SBML MML
esof00120 Saccharum officinarum (sugarcane) (EST) SBML MML
espp00120 (Undocumented) SBML MML
espu00120 Strongylocentrotus purpuratus (purple sea urchin) (EST) SBML MML
estu00120 Solanum tuberosum (potato) (EST) SBML MML
eta00120 Erwinia tasmaniensis SBML MML
etae00120 Triticum aestivum (wheat) (EST) SBML MML
evvi00120 Vitis vinifera (wine grape) (EST) SBML MML
ezel00120 (Undocumented) SBML MML
ezma00120 Zea mays (maize) (EST) SBML MML
fal00120 Frankia alni SBML MML
fgr00120 Fusarium graminearum SBML MML
fjo00120 Flavobacterium johnsoniae SBML MML
fma00120 Finegoldia magna SBML MML
fno00120 Fervidobacterium nodosum SBML MML
fnu00120 Fusobacterium nucleatum SBML MML
fph00120 Francisella philomiragia SBML MML
fps00120 Flavobacterium psychrophilum SBML MML
fra00120 Frankia sp. CcI3 SBML MML
fre00120 Frankia sp. EAN1pec SBML MML
fta00120 Francisella tularensis subsp. holarctica FTNF002-00 SBML MML
ftf00120 Francisella tularensis subsp. tularensis FSC 198 SBML MML
fth00120 Francisella tularensis subsp. holarctica OSU18 SBML MML
ftl00120 Francisella tularensis subsp. holarctica LVS SBML MML
ftm00120 Francisella tularensis subsp. mediasiatica FSC147 SBML MML
ftn00120 Francisella tularensis subsp. novicida U112 SBML MML
ftu00120 Francisella tularensis subsp. tularensis SCHU S4 SBML MML
ftw00120 Francisella tularensis subsp. tularensis WY96-3418 SBML MML
gbe00120 Granulobacter bethesdensis SBML MML
gdi00120 Gluconacetobacter diazotrophicus PAl 5 (Brazil) SBML MML
gfo00120 Gramella forsetii SBML MML
gga00120 Gallus gallus (chicken) SBML MML
gka00120 Geobacillus kaustophilus SBML MML
glo00120 Geobacter lovleyi SBML MML
gme00120 Geobacter metallireducens SBML MML
gox00120 Gluconobacter oxydans SBML MML
gsu00120 Geobacter sulfurreducens SBML MML
gur00120 Geobacter uraniumreducens SBML MML
gvi00120 Gloeobacter violaceus SBML MML
hac00120 Helicobacter acinonychis SBML MML
hal00120 Halobacterium sp. NRC-1 SBML MML
har00120 Herminiimonas arsenicoxydans SBML MML
hau00120 Herpetosiphon aurantiacus SBML MML
hbu00120 Hyperthermus butylicus SBML MML
hch00120 Hahella chejuensis SBML MML
hhe00120 Helicobacter hepaticus SBML MML
hin00120 Haemophilus influenzae Rd KW20 (serotype d) SBML MML
hip00120 Haemophilus influenzae PittEE SBML MML
hit00120 Haemophilus influenzae 86-028NP (nontypeable) SBML MML
hma00120 Haloarcula marismortui SBML MML
hmo00120 Heliobacterium modesticaldum SBML MML
hne00120 Hyphomonas neptunium SBML MML
hpa00120 Helicobacter pylori HPAG1 SBML MML
hsa00120 Homo sapiens (human) SBML MML
hsl00120 Halobacterium salinarum R1 SBML MML
hsm00120 Haemophilus somnus 2336 SBML MML
hso00120 Haemophilus somnus 129PT SBML MML
hwa00120 Haloquadratum walsbyi SBML MML
iho00120 Ignicoccus hospitalis SBML MML
ilo00120 Idiomarina loihiensis SBML MML
jan00120 Jannaschia sp. CCS1 SBML MML
kcr00120 Candidatus Korarchaeum cryptofilum SBML MML
kla00120 Kluyveromyces lactis SBML MML
kpn00120 Klebsiella pneumoniae SBML MML
kra00120 Kineococcus radiotolerans SBML MML
krh00120 Kocuria rhizophila SBML MML
lac00120 Lactobacillus acidophilus SBML MML
lbc00120 Laccaria bicolor SBML MML
lbf00120 Leptospira biflexa serovar Patoc Patoc 1 (Ames) SBML MML
lbi00120 Leptospira biflexa serovar Patoc Patoc 1 (Paris) SBML MML
lbr00120 Lactobacillus brevis SBML MML
lbu00120 Lactobacillus delbrueckii ATCC BAA-365 SBML MML
lca00120 Lactobacillus casei ATCC 334 SBML MML
lch00120 Leptothrix cholodnii SBML MML
lci00120 Leuconostoc citreum SBML MML
ldb00120 Lactobacillus delbrueckii ATCC 11842 SBML MML
lfe00120 Lactobacillus fermentum SBML MML
lga00120 Lactobacillus gasseri SBML MML
lhe00120 Lactobacillus helveticus SBML MML
lic00120 Leptospira interrogans serovar Copenhageni SBML MML
lil00120 Leptospira interrogans serovar lai SBML MML
lip00120 Lawsonia intracellularis SBML MML
ljo00120 Lactobacillus johnsonii SBML MML
llc00120 Lactococcus lactis subsp. cremoris SK11 SBML MML
llm00120 Lactococcus lactis subsp. cremoris MG1363 SBML MML
lma00120 Leishmania major SBML MML
lmf00120 Listeria monocytogenes F2365 SBML MML
lmo00120 Listeria monocytogenes EGD-e SBML MML
lpc00120 Legionella pneumophila Corby SBML MML
lpf00120 Legionella pneumophila Lens SBML MML
lpl00120 Lactobacillus plantarum WCFS1 SBML MML
lpn00120 Legionella pneumophila Philadelphia 1 SBML MML
lpp00120 Legionella pneumophila Paris SBML MML
lre00120 Lactobacillus reuteri DSM 20016 SBML MML
lsa00120 Lactobacillus sakei SBML MML
lsl00120 Lactobacillus salivarius SBML MML
lsp00120 Lysinibacillus sphaericus SBML MML
lwe00120 Listeria welshimeri SLCC5334 SBML MML
lxx00120 Leifsonia xyli xyli CTCB07 SBML MML
mab00120 Mycobacterium abscessus ATCC 19977T SBML MML
mac00120 Methanosarcina acetivorans SBML MML
mae00120 Methanococcus aeolicus SBML MML
mag00120 Magnetospirillum magneticum SBML MML
maq00120 Marinobacter aquaeolei SBML MML
mar00120 Microcystis aeruginosa SBML MML
mav00120 Mycobacterium avium 104 SBML MML
mba00120 Methanosarcina barkeri SBML MML
mbb00120 Mycobacterium bovis BCG Pasteur 1173P2 SBML MML
mbn00120 Candidatus Methanoregula boonei SBML MML
mbo00120 Mycobacterium bovis AF2122/97 SBML MML
mbr00120 Monosiga brevicollis SBML MML
mbu00120 Methanococcoides burtonii SBML MML
mcc00120 Macaca mulatta (rhesus monkey) SBML MML
mdo00120 Monodelphis domestica (opossum) SBML MML
mes00120 Mesorhizobium sp. BNC1 SBML MML
met00120 Methylobacterium sp. 4-46 SBML MML
mex00120 Methylobacterium extorquens SBML MML
mfa00120 Methylobacillus flagellatus SBML MML
mgi00120 Mycobacterium gilvum SBML MML
mgl00120 Malassezia globosa SBML MML
mgm00120 Magnetococcus sp. MC-1 SBML MML
mgr00120 Magnaporthe grisea SBML MML
mhu00120 Methanospirillum hungatei SBML MML
mja00120 Methanococcus jannaschii SBML MML
mjl00120 Mycobacterium sp. JLS SBML MML
mka00120 Methanopyrus kandleri SBML MML
mkm00120 Mycobacterium sp. KMS SBML MML
mle00120 Mycobacterium leprae TN SBML MML
mlo00120 Mesorhizobium loti SBML MML
mma00120 Methanosarcina mazei SBML MML
mmc00120 Mycobacterium sp. MCS SBML MML
mmi00120 Mycobacterium marinum M SBML MML
mmp00120 Methanococcus maripaludis S2 SBML MML
mmr00120 Maricaulis maris SBML MML
mms00120 Minibacterium massiliensis SBML MML
mmu00120 Mus musculus (mouse) SBML MML
mmw00120 Marinomonas sp. MWYL1 SBML MML
mmx00120 Methanococcus maripaludis C6 SBML MML
mmz00120 Methanococcus maripaludis C7 SBML MML
mpa00120 Mycobacterium avium paratuberculosis SBML MML
mpe00120 Mycoplasma penetrans SBML MML
mpt00120 Methylibium petroleiphilum SBML MML
mra00120 Mycobacterium tuberculosis H37Ra SBML MML
mrd00120 Methylobacterium radiotolerans SBML MML
mse00120 Metallosphaera sedula SBML MML
msi00120 Methanobrevibacter smithii ATCC 35061 SBML MML
msm00120 Mycobacterium smegmatis SBML MML
mst00120 Methanosphaera stadtmanae SBML MML
msu00120 Mannheimia succiniciproducens SBML MML
mtc00120 Mycobacterium tuberculosis CDC1551 SBML MML
mtf00120 Mycobacterium tuberculosis F11 SBML MML
mth00120 Methanobacterium thermoautotrophicum SBML MML
mtu00120 Mycobacterium tuberculosis H37Rv SBML MML
mul00120 Mycobacterium ulcerans SBML MML
mva00120 Mycobacterium vanbaalenii SBML MML
mvn00120 Methanococcus vannielii SBML MML
mxa00120 Myxococcus xanthus SBML MML
nar00120 Novosphingobium aromaticivorans SBML MML
nca00120 Nocardioides sp. JS614 SBML MML
ncr00120 Neurospora crassa SBML MML
net00120 Nitrosomonas eutropha SBML MML
neu00120 Nitrosomonas europaea SBML MML
nfa00120 Nocardia farcinica SBML MML
ngo00120 Neisseria gonorrhoeae SBML MML
nha00120 Nitrobacter hamburgensis SBML MML
nma00120 Neisseria meningitidis Z2491 (serogroup A) SBML MML
nmc00120 Neisseria meningitidis FAM18 (serogroup C) SBML MML
nme00120 Neisseria meningitidis MC58 (serogroup B) SBML MML
nmn00120 Neisseria meningitidis 053442 (serogroup C) SBML MML
nmr00120 Nitrosopumilus maritimus SBML MML
nmu00120 Nitrosospira multiformis SBML MML
noc00120 Nitrosococcus oceani SBML MML
nph00120 Natronomonas pharaonis SBML MML
npu00120 Nostoc punctiforme SBML MML
nve00120 Nematostella vectensis (sea anemone) SBML MML
nwi00120 Nitrobacter winogradskyi SBML MML
oaa00120 Ornithorhynchus anatinus (platypus) SBML MML
oan00120 Ochrobactrum anthropi SBML MML
oih00120 Oceanobacillus iheyensis SBML MML
olu00120 Ostreococcus lucimarinus SBML MML
osa00120 Oryza sativa japonica (Japanese rice) SBML MML
ote00120 Opitutus terrae SBML MML
pab00120 Pyrococcus abyssi SBML MML
pac00120 Propionibacterium acnes SBML MML
pae00120 Pseudomonas aeruginosa PAO1 SBML MML
pai00120 Pyrobaculum aerophilum SBML MML
pan00120 Podospora anserina SBML MML
pap00120 Pseudomonas aeruginosa PA7 SBML MML
par00120 Psychrobacter arcticum SBML MML
pas00120 Pyrobaculum arsenaticum SBML MML
pat00120 Pseudoalteromonas atlantica SBML MML
pau00120 Pseudomonas aeruginosa UCBPP-PA14 SBML MML
pca00120 Pelobacter carbinolicus SBML MML
pcl00120 Pyrobaculum calidifontis SBML MML
pcr00120 Psychrobacter cryohalolentis SBML MML
pde00120 Paracoccus denitrificans SBML MML
pdi00120 Parabacteroides distasonis SBML MML
pen00120 Pseudomonas entomophila SBML MML
pfa00120 Plasmodium falciparum 3D7 SBML MML
pfl00120 Pseudomonas fluorescens Pf-5 SBML MML
pfo00120 Pseudomonas fluorescens Pf0-1 SBML MML
pfu00120 Pyrococcus furiosus SBML MML
pgi00120 Porphyromonas gingivalis W83 SBML MML
pgn00120 Porphyromonas gingivalis ATCC 33277 SBML MML
pha00120 Pseudoalteromonas haloplanktis SBML MML
pho00120 Pyrococcus horikoshii SBML MML
pic00120 Pichia stipitis SBML MML
pin00120 Psychromonas ingrahamii SBML MML
pis00120 Pyrobaculum islandicum SBML MML
pla00120 Parvibaculum lavamentivorans SBML MML
plu00120 Photorhabdus luminescens SBML MML
pmb00120 Prochlorococcus marinus AS9601 SBML MML
pmg00120 Prochlorococcus marinus MIT 9301 SBML MML
pmy00120 Pseudomonas mendocina SBML MML
pna00120 Polaromonas naphthalenivorans SBML MML
pne00120 Polynucleobacter necessarius SBML MML
pnu00120 Polynucleobacter sp. QLW-P1DMWA-1 SBML MML
pol00120 Polaromonas sp. JS666 SBML MML
ppd00120 Pelobacter propionicus SBML MML
ppf00120 Pseudomonas putida F1 SBML MML
ppg00120 Pseudomonas putida GB-1 SBML MML
ppp00120 Physcomitrella patens subsp. patens SBML MML
ppr00120 Photobacterium profundum SBML MML
ppu00120 Pseudomonas putida KT2440 SBML MML
ppw00120 Pseudomonas putida W619 SBML MML
prw00120 Psychrobacter sp. PRwf-1 SBML MML
psa00120 Pseudomonas stutzeri SBML MML
psb00120 Pseudomonas syringae pv. syringae B728a SBML MML
psp00120 Pseudomonas syringae pv. phaseolicola 1448A SBML MML
pst00120 Pseudomonas syringae pv. tomato DC3000 SBML MML
pto00120 Picrophilus torridus SBML MML
ptr00120 Pan troglodytes (chimpanzee) SBML MML
pub00120 Candidatus Pelagibacter ubique SBML MML
rba00120 Rhodopirellula baltica SBML MML
rca00120 Roseiflexus castenholzii DSM13941 SBML MML
rci00120 Uncultured methanogenic archaeon RC-I SBML MML
rde00120 Roseobacter denitrificans SBML MML
rec00120 Rhizobium etli CIAT 652 SBML MML
reh00120 Ralstonia eutropha H16 SBML MML
ret00120 Rhizobium etli CFN 42 SBML MML
reu00120 Ralstonia eutropha JMP134 SBML MML
rfr00120 Rhodoferax ferrireducens SBML MML
rha00120 Rhodococcus sp. RHA1 SBML MML
rle00120 Rhizobium leguminosarum SBML MML
rme00120 Ralstonia metallidurans SBML MML
rno00120 Rattus norvegicus (rat) SBML MML
rpa00120 Rhodopseudomonas palustris CGA009 SBML MML
rpb00120 Rhodopseudomonas palustris HaA2 SBML MML
rpc00120 Rhodopseudomonas palustris BisB18 SBML MML
rpd00120 Rhodopseudomonas palustris BisB5 SBML MML
rpe00120 Rhodopseudomonas palustris BisA53 SBML MML
rpt00120 Rhodopseudomonas palustris TIE-1 SBML MML
rrs00120 Roseiflexus sp. RS-1 SBML MML
rru00120 Rhodospirillum rubrum SBML MML
rsa00120 Renibacterium salmoninarum SBML MML
rsh00120 Rhodobacter sphaeroides ATCC 17029 SBML MML
rso00120 Ralstonia solanacearum SBML MML
rsp00120 Rhodobacter sphaeroides 2.4.1 SBML MML
rsq00120 Rhodobacter sphaeroides ATCC 17025 SBML MML
rxy00120 Rubrobacter xylanophilus SBML MML
saa00120 Staphylococcus aureus USA300 SBML MML
sab00120 Staphylococcus aureus RF122 SBML MML
sac00120 Staphylococcus aureus COL SBML MML
sae00120 Staphylococcus aureus Newman SBML MML
sah00120 Staphylococcus aureus JH1 SBML MML
sai00120 Sulfolobus acidocaldarius SBML MML
saj00120 Staphylococcus aureus JH9 SBML MML
sal00120 Sphingopyxis alaskensis SBML MML
sam00120 Staphylococcus aureus MW2 SBML MML
sao00120 Staphylococcus aureus NCTC8325 SBML MML
saq00120 Salinispora arenicola SBML MML
sar00120 Staphylococcus aureus MRSA252 SBML MML
sas00120 Staphylococcus aureus MSSA476 SBML MML
sat00120 Syntrophus aciditrophicus SBML MML
sau00120 Staphylococcus aureus N315 SBML MML
sav00120 Staphylococcus aureus Mu50 SBML MML
saw00120 Staphylococcus aureus Mu3 SBML MML
sax00120 Staphylococcus aureus USA300 TCH1516 SBML MML
saz00120 Shewanella amazonensis SBML MML
sbc00120 Shigella boydii CDC 3083-94 SBML MML
sbl00120 Shewanella baltica OS155 SBML MML
sbm00120 Shewanella baltica OS185 SBML MML
sbn00120 Shewanella baltica OS195 SBML MML
sbo00120 Shigella boydii Sb227 SBML MML
sce00120 Saccharomyces cerevisiae SBML MML
scl00120 Sorangium cellulosum SBML MML
sco00120 Streptomyces coelicolor SBML MML
sde00120 Saccharophagus degradans SBML MML
sdn00120 Shewanella denitrificans SBML MML
sdy00120 Shigella dysenteriae SBML MML
sec00120 Salmonella enterica subsp. enterica serovar Choleraesuis SBML MML
sen00120 Saccharopolyspora erythraea SBML MML
sep00120 Staphylococcus epidermidis ATCC 12228 SBML MML
ser00120 Staphylococcus epidermidis RP62A SBML MML
ses00120 Salmonella enterica subsp. arizonae SBML MML
sfl00120 Shigella flexneri 301 (serotype 2a) SBML MML
sfr00120 Shewanella frigidimarina SBML MML
sfu00120 Syntrophobacter fumaroxidans SBML MML
sfv00120 Shigella flexneri 8401 (serotype 5b) SBML MML
sfx00120 Shigella flexneri 2457T (serotype 2a) SBML MML
sgr00120 Streptomyces griseus SBML MML
sha00120 Staphylococcus haemolyticus SBML MML
she00120 Shewanella sp. MR-4 SBML MML
shl00120 Shewanella halifaxensis SBML MML
shm00120 Shewanella sp. MR-7 SBML MML
shn00120 Shewanella sp. ANA-3 SBML MML
shw00120 Shewanella sp. W3-18-1 SBML MML
sil00120 Ruegeria pomeroyi SBML MML
sit00120 Silicibacter sp. TM1040 SBML MML
slo00120 Shewanella loihica SBML MML
sma00120 Streptomyces avermitilis SBML MML
smd00120 Sinorhizobium medicae SBML MML
sme00120 Sinorhizobium meliloti SBML MML
sml00120 Stenotrophomonas maltophilia SBML MML
smr00120 Staphylothermus marinus SBML MML
son00120 Shewanella oneidensis SBML MML
spa00120 Streptococcus pyogenes MGAS10394 (serotype M6) SBML MML
spb00120 Streptococcus pyogenes MGAS6180 (serotype M28) SBML MML
spc00120 Shewanella putrefaciens SBML MML
spd00120 Streptococcus pneumoniae D39 SBML MML
spe00120 Serratia proteamaculans SBML MML
sph00120 Streptococcus pyogenes MGAS10270 (serotype M2) SBML MML
spk00120 Streptococcus pyogenes MGAS9429 (serotype M12) SBML MML
spl00120 Shewanella pealeana SBML MML
spo00120 Schizosaccharomyces pombe SBML MML
spq00120 Salmonella enterica subsp. enterica serovar Paratyphi B SBML MML
spr00120 Streptococcus pneumoniae R6 SBML MML
spt00120 Salmonella enterica subsp. enterica serovar Paratyphi A SBML MML
spu00120 Strongylocentrotus purpuratus (purple sea urchin) SBML MML
spz00120 Streptococcus pyogenes MGAS5005 (serotype M1) SBML MML
sru00120 Salinibacter ruber SBML MML
ssa00120 Streptococcus sanguinis SBML MML
ssc00120 Sus scrofa (pig) SBML MML
sse00120 Shewanella sediminis SBML MML
ssn00120 Shigella sonnei SBML MML
sso00120 Sulfolobus solfataricus SBML MML
ssp00120 Staphylococcus saprophyticus SBML MML
sth00120 Symbiobacterium thermophilum SBML MML
stm00120 Salmonella typhimurium LT2 SBML MML
sto00120 Sulfolobus tokodaii SBML MML
stp00120 Salinispora tropica SBML MML
stt00120 Salmonella enterica subsp. enterica serovar Typhi Ty2 SBML MML
sty00120 Salmonella enterica subsp. enterica serovar Typhi CT18 SBML MML
sul00120 Sulfurihydrogenibium sp. YO3AOP1 SBML MML
sun00120 Sulfurovum sp. NBC37-1 SBML MML
sus00120 Solibacter usitatus SBML MML
swd00120 Shewanella woodyi ATCC 51908 SBML MML
swi00120 Sphingomonas wittichii SBML MML
syc00120 Synechococcus elongatus PCC6301 SBML MML
syd00120 Synechococcus sp. CC9605 SBML MML
syf00120 Synechococcus elongatus PCC7942 SBML MML
syg00120 Synechococcus sp. CC9311 SBML MML
syn00120 Synechocystis sp. PCC6803 SBML MML
syr00120 Synechococcus sp. RCC307 SBML MML
syx00120 Synechococcus sp. WH7803 SBML MML
tac00120 Thermoplasma acidophilum SBML MML
tbd00120 Thiobacillus denitrificans SBML MML
tbr00120 Trypanosoma brucei SBML MML
tca00120 Tribolium castaneum (red flour beetle) SBML MML
tcr00120 Trypanosoma cruzi SBML MML
tcx00120 Thiomicrospira crunogena SBML MML
tde00120 Treponema denticola SBML MML
ter00120 Trichodesmium erythraeum SBML MML
tet00120 Tetrahymena thermophila SBML MML
tex00120 Thermoanaerobacter sp. X514 SBML MML
tfu00120 Thermobifida fusca SBML MML
tko00120 Thermococcus kodakaraensis SBML MML
tle00120 Thermotoga lettingae SBML MML
tma00120 Thermotoga maritima SBML MML
tme00120 Thermosipho melanesiensis SBML MML
tne00120 Thermoproteus neutrophilus SBML MML
tpd00120 Thermoanaerobacter pseudethanolicus SBML MML
tpe00120 Thermofilum pendens SBML MML
tpt00120 Thermotoga petrophila SBML MML
trq00120 Thermotoga sp. RQ2 SBML MML
tte00120 Thermoanaerobacter tengcongensis SBML MML
tth00120 Thermus thermophilus HB27 SBML MML
ttj00120 Thermus thermophilus HB8 SBML MML
tva00120 Trichomonas vaginalis SBML MML
tvo00120 Thermoplasma volcanium SBML MML
twh00120 Tropheryma whipplei Twist SBML MML
tws00120 Tropheryma whipplei TW08/27 SBML MML
uma00120 Ustilago maydis SBML MML
vch00120 Vibrio cholerae O1 SBML MML
vco00120 Vibrio cholerae O395 SBML MML
vei00120 Verminephrobacter eiseniae SBML MML
vfi00120 Vibrio fischeri SBML MML
vha00120 Vibrio harveyi SBML MML
vpa00120 Vibrio parahaemolyticus SBML MML
vpo00120 Vanderwaltozyma polyspora SBML MML
vvu00120 Vibrio vulnificus CMCP6 SBML MML
vvy00120 Vibrio vulnificus YJ016 SBML MML
wpi00120 Wolbachia pipientis SBML MML
wsu00120 Wolinella succinogenes SBML MML
xac00120 Xanthomonas axonopodis SBML MML
xau00120 Xanthobacter autotrophicus SBML MML
xcb00120 Xanthomonas campestris pv. campestris 8004 SBML MML
xcc00120 Xanthomonas campestris pv. campestris ATCC 33913 SBML MML
xcv00120 Xanthomonas campestris pv. vesicatoria SBML MML
xfa00120 Xylella fastidiosa 9a5c SBML MML
xfm00120 Xylella fastidiosa M12 SBML MML
xfn00120 Xylella fastidiosa M23 SBML MML
xft00120 Xylella fastidiosa Temecula1 SBML MML
xla00120 Xenopus laevis (African clawed frog) SBML MML
xom00120 Xanthomonas oryzae MAFF311018 SBML MML
xoo00120 Xanthomonas oryzae KACC10331 SBML MML
xtr00120 Xenopus tropicalis (western clawed frog) SBML MML
yen00120 Yersinia enterocolitica SBML MML
yli00120 Yarrowia lipolytica SBML MML
ypa00120 Yersinia pestis Antiqua SBML MML
ype00120 Yersinia pestis CO92 SBML MML
ypg00120 Yersinia pestis Angola SBML MML
ypi00120 Yersinia pseudotuberculosis IP31758 SBML MML
ypk00120 Yersinia pestis KIM SBML MML
ypm00120 Yersinia pestis Mediaevails SBML MML
ypn00120 Yersinia pestis Nepal516 SBML MML
ypp00120 Yersinia pestis Pestoides SBML MML
yps00120 Yersinia pseudotuberculosis IP32953 SBML MML
ypy00120 Yersinia pseudotuberculosis YPIII SBML MML
zmo00120 Zymomonas mobilis SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.