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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Pathway 00040: Pentose and glucuronate interconversions

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkOrganismSBMLMMLDownload Applet
aae00040 Aquifex aeolicus SBML MML
aau00040 Arthrobacter aurescens SBML MML
aav00040 Acidovorax avenae SBML MML
aba00040 Acidobacteria bacterium SBML MML
abc00040 Acinetobacter baumannii ACICU SBML MML
abm00040 Acinetobacter baumannii SDF SBML MML
abo00040 Alcanivorax borkumensis SBML MML
abu00040 Arcobacter butzleri SBML MML
aby00040 Acinetobacter baumannii AYE SBML MML
acb00040 Acinetobacter baumannii ATCC 17978 SBML MML
ace00040 Acidothermus cellulolyticus SBML MML
aci00040 Acinetobacter sp. ADP1 SBML MML
acl00040 Acholeplasma laidlawii SBML MML
acr00040 Acidiphilium cryptum JF-5 SBML MML
ade00040 Anaeromyxobacter dehalogenans 2CP-C SBML MML
aeh00040 Alkalilimnicola ehrlichei SBML MML
afm00040 Aspergillus fumigatus SBML MML
afu00040 Archaeoglobus fulgidus SBML MML
afw00040 Anaeromyxobacter sp. Fw109-5 SBML MML
aga00040 Anopheles gambiae (mosquito) SBML MML
ago00040 Ashbya gossypii (Eremothecium gossypii) SBML MML
aha00040 Aeromonas hydrophila SBML MML
ajs00040 Acidovorax sp. JS42 SBML MML
amr00040 Acaryochloris marina SBML MML
amt00040 Alkaliphilus metalliredigens SBML MML
ana00040 Anabaena sp. PCC7120 SBML MML
ang00040 Aspergillus niger SBML MML
ani00040 Aspergillus nidulans SBML MML
aoe00040 Alkaliphilus oremlandii SBML MML
aor00040 Aspergillus oryzae SBML MML
apa00040 Actinobacillus pleuropneumoniae AP76 (serotype 7) SBML MML
ape00040 Aeropyrum pernix SBML MML
apj00040 Actinobacillus pleuropneumoniae JL03 (serotype 3) SBML MML
apl00040 Actinobacillus pleuropneumoniae L20 (serotype 5b) SBML MML
art00040 Arthrobacter sp. FB24 SBML MML
asa00040 Aeromonas salmonicida SBML MML
asu00040 Actinobacillus succinogenes SBML MML
atc00040 Agrobacterium tumefaciens C58 (Cereon) SBML MML
ath00040 Arabidopsis thaliana (thale cress) SBML MML
atu00040 Agrobacterium tumefaciens C58 SBML MML
ava00040 Anabaena variabilis SBML MML
azc00040 Azorhizobium caulinodans SBML MML
azo00040 Azoarcus sp. BH72 SBML MML
baa00040 Bacillus anthracis A2012 SBML MML
bab00040 Buchnera aphidicola Bp SBML MML
bac00040 Burkholderia ambifaria MC40-6 SBML MML
bad00040 Bifidobacterium adolescentis SBML MML
bam00040 Burkholderia cepacia SBML MML
ban00040 Bacillus anthracis Ames SBML MML
bar00040 Bacillus anthracis Ames 0581 SBML MML
bat00040 Bacillus anthracis Sterne SBML MML
bav00040 Bordetella avium SBML MML
bay00040 Bacillus amyloliquefaciens SBML MML
bba00040 Bdellovibrio bacteriovorus SBML MML
bbk00040 Bartonella bacilliformis SBML MML
bbr00040 Bordetella bronchiseptica SBML MML
bbt00040 Bradyrhizobium sp. BTAi1 SBML MML
bca00040 Bacillus cereus ATCC 10987 SBML MML
bce00040 Bacillus cereus ATCC 14579 SBML MML
bch00040 Burkholderia cenocepacia HI2424 SBML MML
bcl00040 Bacillus clausii SBML MML
bcm00040 Burkholderia cenocepacia MC0-3 SBML MML
bcn00040 Burkholderia cenocepacia AU1054 SBML MML
bcs00040 Brucella canis SBML MML
bcy00040 Bacillus cytotoxis NVH 391-98 SBML MML
bcz00040 Bacillus cereus ZK SBML MML
bfr00040 Bacteroides fragilis YCH46 SBML MML
bfs00040 Bacteroides fragilis NCTC9343 SBML MML
bha00040 Bacillus halodurans SBML MML
bhe00040 Bartonella henselae SBML MML
bid00040 Beijerinckia indica SBML MML
bja00040 Bradyrhizobium japonicum SBML MML
bld00040 Bacillus licheniformis DSM13 SBML MML
bli00040 Bacillus licheniformis ATCC 14580 SBML MML
blj00040 Bifidobacterium longum DJO10A SBML MML
blo00040 Bifidobacterium longum NCC2705 SBML MML
bma00040 Burkholderia mallei ATCC 23344 SBML MML
bmb00040 Brucella abortus 9-941 SBML MML
bmc00040 Brucella abortus S19 SBML MML
bme00040 Brucella melitensis 16M SBML MML
bmf00040 Brucella melitensis biovar Abortus SBML MML
bml00040 Burkholderia mallei NCTC 10229 SBML MML
bmn00040 Burkholderia mallei NCTC 10247 SBML MML
bms00040 Brucella suis 1330 SBML MML
bmt00040 Brucella suis ATCC 23445 SBML MML
bmu00040 Burkholderia multivorans ATCC 17616 (JGI) SBML MML
bmv00040 Burkholderia mallei SAVP1 SBML MML
bmy00040 Brugia malayi (filaria) SBML MML
bov00040 Brucella ovis SBML MML
bpa00040 Bordetella parapertussis SBML MML
bpd00040 Burkholderia pseudomallei 668 SBML MML
bpe00040 Bordetella pertussis SBML MML
bph00040 Burkholderia phymatum SBML MML
bpl00040 Burkholderia pseudomallei 1106a SBML MML
bpm00040 Burkholderia pseudomallei 1710b SBML MML
bps00040 Burkholderia pseudomallei K96243 SBML MML
bpt00040 Bordetella petrii SBML MML
bpu00040 Bacillus pumilus SBML MML
bqu00040 Bartonella quintana SBML MML
bra00040 Bradyrhizobium sp. ORS278 SBML MML
bsu00040 Bacillus subtilis SBML MML
bta00040 Bos taurus (cow) SBML MML
bte00040 Burkholderia thailandensis SBML MML
bth00040 Bacteroides thetaiotaomicron SBML MML
btk00040 Bacillus thuringiensis 97-27 SBML MML
btl00040 Bacillus thuringiensis Al Hakam SBML MML
btr00040 Bartonella tribocorum SBML MML
bur00040 Burkholderia sp. 383 SBML MML
bvi00040 Burkholderia vietnamiensis SBML MML
bvu00040 Bacteroides vulgatus SBML MML
bwe00040 Bacillus weihenstephanensis SBML MML
bxe00040 Burkholderia xenovorans SBML MML
cac00040 Clostridium acetobutylicum SBML MML
cak00040 Caulobacter sp. K31 SBML MML
cal00040 Candida albicans SBML MML
cau00040 Chloroflexus aurantiacus SBML MML
cba00040 Clostridium botulinum A ATCC 19397 SBML MML
cbb00040 Clostridium botulinum B1 Okra SBML MML
cbd00040 Coxiella burnetii Dugway 5J108-111 SBML MML
cbe00040 Clostridium beijerinckii SBML MML
cbf00040 Clostridium botulinum F Langeland SBML MML
cbh00040 Clostridium botulinum A Hall SBML MML
cbk00040 Clostridium botulinum B Eklund 17B SBML MML
cbl00040 Clostridium botulinum A3 Loch Maree SBML MML
cbo00040 Clostridium botulinum A ATCC 3502 SBML MML
cbs00040 Coxiella burnetii RSA 331 SBML MML
cbu00040 Coxiella burnetii RSA 493 SBML MML
cch00040 Chlorobium chlorochromatii SBML MML
cco00040 Campylobacter concisus 13826 SBML MML
ccr00040 Caulobacter crescentus CB15 SBML MML
ccv00040 Campylobacter curvus SBML MML
cdf00040 Clostridium difficile SBML MML
cdi00040 Corynebacterium diphtheriae SBML MML
cef00040 Corynebacterium efficiens SBML MML
cel00040 Caenorhabditis elegans (nematode) SBML MML
cfa00040 Canis familiaris (dog) SBML MML
cff00040 Campylobacter fetus SBML MML
cgb00040 Corynebacterium glutamicum ATCC 13032 (Bielefeld) SBML MML
cgl00040 Corynebacterium glutamicum ATCC 13032 (Kyowa Hakko) SBML MML
cgr00040 Candida glabrata SBML MML
cgt00040 Corynebacterium glutamicum R SBML MML
cha00040 Campylobacter hominis ATCC BAA-381 SBML MML
chu00040 Cytophaga hutchinsonii SBML MML
chy00040 Carboxydothermus hydrogenoformans SBML MML
cja00040 Cellvibrio japonicus SBML MML
cjd00040 Campylobacter jejuni subsp. doylei 269.97 SBML MML
cje00040 Campylobacter jejuni NCTC11168 SBML MML
cjj00040 Campylobacter jejuni 81-176 SBML MML
cjk00040 Corynebacterium jeikeium SBML MML
cjr00040 Campylobacter jejuni RM1221 SBML MML
cju00040 Campylobacter jejuni 81116 SBML MML
ckl00040 Clostridium kluyveri DSM 555 SBML MML
cko00040 Citrobacter koseri ATCC BAA-895 SBML MML
cma00040 Caldivirga maquilingensis SBML MML
cme00040 Cyanidioschyzon merolae SBML MML
cmi00040 Clavibacter michiganensis subsp. michiganensis SBML MML
cms00040 Clavibacter michiganensis subsp. sepedonicus SBML MML
cnb00040 Cryptococcus neoformans B-3501A SBML MML
cne00040 Cryptococcus neoformans JEC21 SBML MML
cno00040 Clostridium novyi SBML MML
cpb00040 Chlorobium phaeobacteroides BS1 SBML MML
cpe00040 Clostridium perfringens 13 SBML MML
cpf00040 Clostridium perfringens ATCC 13124 SBML MML
cph00040 Chlorobium phaeobacteroides DSM 266 SBML MML
cpr00040 Clostridium perfringens SM101 SBML MML
cps00040 Colwellia psychrerythraea SBML MML
cpy00040 Clostridium phytofermentans SBML MML
cre00040 Chlamydomonas reinhardtii SBML MML
csa00040 Chromohalobacter salexigens SBML MML
csc00040 Caldicellulosiruptor saccharolyticus SBML MML
ctc00040 Clostridium tetani E88 SBML MML
cte00040 Chlorobaculum tepidum SBML MML
cth00040 Clostridium thermocellum SBML MML
cur00040 Corynebacterium urealyticum SBML MML
cvi00040 Chromobacterium violaceum SBML MML
cya00040 Cyanobacteria Yellowstone A-Prime SBML MML
cyb00040 Cyanobacteria Yellowstone B-Prime SBML MML
cyt00040 Cyanothece sp. ATCC 51142 SBML MML
daag00040 (Undocumented) SBML MML
dac00040 Delftia acidovorans SBML MML
dame00040 (Undocumented) SBML MML
dar00040 Dechloromonas aromatica SBML MML
dau00040 Candidatus Desulforudis audaxviator SBML MML
dbmo00040 Bombyx mori (silkmoth) SBML MML
dcbr00040 (Undocumented) SBML MML
dcin00040 (Undocumented) SBML MML
dde00040 Desulfovibrio desulfuricans G20 SBML MML
ddi00040 Dictyostelium discoideum SBML MML
deb00040 Dehalococcoides sp. BAV1 SBML MML
decb00040 (Undocumented) SBML MML
deh00040 Dehalococcoides sp. CBDB1 SBML MML
det00040 Dehalococcoides ethenogenes SBML MML
dfru00040 Fugu rubripes (Japanese puffer fish) SBML MML
dge00040 Deinococcus geothermalis SBML MML
dha00040 Debaryomyces hansenii SBML MML
dkwa00040 Kluyveromyces waltii SBML MML
dme00040 Drosophila melanogaster (fruit fly) SBML MML
dno00040 Dichelobacter nodosus SBML MML
dol00040 Candidatus Desulfococcus oleovorans SBML MML
dola00040 Oryzias latipes (Japanese medaka) SBML MML
dota00040 Ostreococcus tauri SBML MML
dpkn00040 (Undocumented) SBML MML
dpo00040 Drosophila pseudoobscura pseudoobscura SBML MML
dpop00040 (Undocumented) SBML MML
dps00040 Desulfotalea psychrophila SBML MML
dptm00040 (Undocumented) SBML MML
dre00040 Danio rerio (zebrafish) SBML MML
drm00040 Desulfotomaculum reducens SBML MML
dsba00040 Saccharomyces bayanus SBML MML
dsh00040 Dinoroseobacter shibae SBML MML
dsmi00040 Saccharomyces mikatae SBML MML
dspd00040 (Undocumented) SBML MML
dsy00040 Desulfitobacterium hafniense Y51 SBML MML
dtni00040 Tetraodon nigroviridis (green spotted puffer) SBML MML
dtps00040 (Undocumented) SBML MML
dvl00040 Desulfovibrio vulgaris DP4 SBML MML
dvu00040 Desulfovibrio vulgaris Hildenborough SBML MML
dvvi00040 (Undocumented) SBML MML
eacp00040 (Undocumented) SBML MML
eath00040 Arabidopsis thaliana (thale cress) (EST) SBML MML
eba00040 Aromatoleum aromaticum EbN1 SBML MML
ebna00040 Brassica napus (rape) (EST) SBML MML
ebvl00040 Beta vulgaris (beet) (EST) SBML MML
eca00040 Erwinia carotovora SBML MML
ecan00040 Capsicum annuum (chile pepper) (EST) SBML MML
ecc00040 Escherichia coli CFT073 (UPEC) SBML MML
ecd00040 Escherichia coli K-12 DH10B SBML MML
ece00040 Escherichia coli O157 EDL933 (EHEC) SBML MML
eci00040 Escherichia coli UTI89 (UPEC) SBML MML
ecj00040 Escherichia coli K-12 W3110 SBML MML
ecl00040 Escherichia coli ATCC 8739 SBML MML
ecm00040 Escherichia coli SECEC SBML MML
eco00040 Escherichia coli K-12 MG1655 SBML MML
ecp00040 Escherichia coli 536 (UPEC) SBML MML
ecs00040 Escherichia coli O157 Sakai (EHEC) SBML MML
ecsi00040 Citrus sinensis (Valencia orange) (EST) SBML MML
ecsv00040 Ciona savignyi (EST) SBML MML
ecu00040 Encephalitozoon cuniculi SBML MML
ecv00040 Escherichia coli APEC O1 SBML MML
ecw00040 Escherichia coli E24377A SBML MML
ecx00040 Escherichia coli HS SBML MML
eees00040 Euphorbia esula (leafy spurge) (EST) SBML MML
efa00040 Enterococcus faecalis SBML MML
efar00040 Festuca arundinacea (tall fescue) (EST) SBML MML
egar00040 Gossypium arboreum (tree cotton) (EST) SBML MML
eghi00040 Gossypium hirsutum (upland cotton) (EST) SBML MML
egma00040 Glycine max (soybean) (EST) SBML MML
egra00040 Gossypium raimondii (EST) SBML MML
ehan00040 Helianthus annuus (sunflower) (EST) SBML MML
ehi00040 Entamoeba histolytica SBML MML
ehvu00040 Hordeum vulgare (barley) (EST) SBML MML
eini00040 Ipomoea nil (Japanese morning glory) (EST) SBML MML
eli00040 Erythrobacter litoralis SBML MML
elja00040 Lotus japonicus (lotus) (EST) SBML MML
elpe00040 Lactuca perennis (blue lettuce) (EST) SBML MML
elsi00040 Lactuca saligna (willow-leaf lettuce) (EST) SBML MML
elst00040 Lactuca sativa (lettuce) (EST) SBML MML
elvi00040 Lactuca virosa (wild lettuce) (EST) SBML MML
emec00040 Manihot esculenta (cassava) (EST) SBML MML
emte00040 Molgula tectiformis (EST) SBML MML
emtr00040 Medicago truncatula (barrel medic) (EST) SBML MML
enbe00040 Nicotiana benthamiana (EST) SBML MML
ent00040 Enterobacter sp. 638 SBML MML
enta00040 Nicotiana tabacum (tobacco) (EST) SBML MML
eosa00040 Oryza sativa (rice) (EST) SBML MML
eosi00040 Oryza sativa indica (Indian rice) (EST) SBML MML
eosj00040 Oryza sativa japonica (Japanese rice) (EST) SBML MML
epgl00040 Picea glauca (white spruce) (EST) SBML MML
epop00040 Populus trichocarpa (black cottonwood) (EST) SBML MML
eppa00040 (Undocumented) SBML MML
eppi00040 Pinus pinaster (maritime pine) (EST) SBML MML
eppp00040 Physcomitrella patens subsp. patens (EST) SBML MML
epps00040 Prunus persica (peach) (EST) SBML MML
epsi00040 Picea sitchensis (sitka spruce) (EST) SBML MML
epta00040 Pinus taeda (loblolly pine) (EST) SBML MML
eptp00040 Populus tremula (European aspen) (EST) SBML MML
esa00040 Enterobacter sakazakii SBML MML
esbi00040 Sorghum bicolor (sorghum) (EST) SBML MML
esi00040 Exiguobacterium sibiricum SBML MML
esja00040 Schistosoma japonicum (fluke) (EST) SBML MML
esly00040 Solanum lycopersicum (tomato) (EST) SBML MML
esof00040 Saccharum officinarum (sugarcane) (EST) SBML MML
espp00040 (Undocumented) SBML MML
espu00040 Strongylocentrotus purpuratus (purple sea urchin) (EST) SBML MML
estu00040 Solanum tuberosum (potato) (EST) SBML MML
eta00040 Erwinia tasmaniensis SBML MML
etae00040 Triticum aestivum (wheat) (EST) SBML MML
evvi00040 Vitis vinifera (wine grape) (EST) SBML MML
ezel00040 (Undocumented) SBML MML
ezma00040 Zea mays (maize) (EST) SBML MML
fal00040 Frankia alni SBML MML
fgr00040 Fusarium graminearum SBML MML
fjo00040 Flavobacterium johnsoniae SBML MML
fma00040 Finegoldia magna SBML MML
fnu00040 Fusobacterium nucleatum SBML MML
fph00040 Francisella philomiragia SBML MML
fps00040 Flavobacterium psychrophilum SBML MML
fra00040 Frankia sp. CcI3 SBML MML
fre00040 Frankia sp. EAN1pec SBML MML
fta00040 Francisella tularensis subsp. holarctica FTNF002-00 SBML MML
ftf00040 Francisella tularensis subsp. tularensis FSC 198 SBML MML
fth00040 Francisella tularensis subsp. holarctica OSU18 SBML MML
ftl00040 Francisella tularensis subsp. holarctica LVS SBML MML
ftm00040 Francisella tularensis subsp. mediasiatica FSC147 SBML MML
ftn00040 Francisella tularensis subsp. novicida U112 SBML MML
ftu00040 Francisella tularensis subsp. tularensis SCHU S4 SBML MML
ftw00040 Francisella tularensis subsp. tularensis WY96-3418 SBML MML
gbe00040 Granulobacter bethesdensis SBML MML
gdi00040 Gluconacetobacter diazotrophicus PAl 5 (Brazil) SBML MML
gfo00040 Gramella forsetii SBML MML
gga00040 Gallus gallus (chicken) SBML MML
gka00040 Geobacillus kaustophilus SBML MML
gla00040 Giardia lamblia SBML MML
glo00040 Geobacter lovleyi SBML MML
gme00040 Geobacter metallireducens SBML MML
gox00040 Gluconobacter oxydans SBML MML
gsu00040 Geobacter sulfurreducens SBML MML
gtn00040 Geobacillus thermodenitrificans SBML MML
gur00040 Geobacter uraniumreducens SBML MML
gvi00040 Gloeobacter violaceus SBML MML
hac00040 Helicobacter acinonychis SBML MML
har00040 Herminiimonas arsenicoxydans SBML MML
hau00040 Herpetosiphon aurantiacus SBML MML
hch00040 Hahella chejuensis SBML MML
hdu00040 Haemophilus ducreyi SBML MML
hha00040 Halorhodospira halophila SBML MML
hhe00040 Helicobacter hepaticus SBML MML
hin00040 Haemophilus influenzae Rd KW20 (serotype d) SBML MML
hip00040 Haemophilus influenzae PittEE SBML MML
hiq00040 Haemophilus influenzae PittGG SBML MML
hit00040 Haemophilus influenzae 86-028NP (nontypeable) SBML MML
hma00040 Haloarcula marismortui SBML MML
hmo00040 Heliobacterium modesticaldum SBML MML
hne00040 Hyphomonas neptunium SBML MML
hpa00040 Helicobacter pylori HPAG1 SBML MML
hpj00040 Helicobacter pylori J99 SBML MML
hpy00040 Helicobacter pylori 26695 SBML MML
hsa00040 Homo sapiens (human) SBML MML
hsm00040 Haemophilus somnus 2336 SBML MML
hso00040 Haemophilus somnus 129PT SBML MML
hwa00040 Haloquadratum walsbyi SBML MML
iho00040 Ignicoccus hospitalis SBML MML
ilo00040 Idiomarina loihiensis SBML MML
jan00040 Jannaschia sp. CCS1 SBML MML
kla00040 Kluyveromyces lactis SBML MML
kpn00040 Klebsiella pneumoniae SBML MML
kra00040 Kineococcus radiotolerans SBML MML
krh00040 Kocuria rhizophila SBML MML
lac00040 Lactobacillus acidophilus SBML MML
lbc00040 Laccaria bicolor SBML MML
lbf00040 Leptospira biflexa serovar Patoc Patoc 1 (Ames) SBML MML
lbi00040 Leptospira biflexa serovar Patoc Patoc 1 (Paris) SBML MML
lbj00040 Leptospira borgpetersenii JB197 SBML MML
lbl00040 Leptospira borgpetersenii L550 SBML MML
lbr00040 Lactobacillus brevis SBML MML
lbu00040 Lactobacillus delbrueckii ATCC BAA-365 SBML MML
lca00040 Lactobacillus casei ATCC 334 SBML MML
lch00040 Leptothrix cholodnii SBML MML
lci00040 Leuconostoc citreum SBML MML
ldb00040 Lactobacillus delbrueckii ATCC 11842 SBML MML
lfe00040 Lactobacillus fermentum SBML MML
lga00040 Lactobacillus gasseri SBML MML
lhe00040 Lactobacillus helveticus SBML MML
lic00040 Leptospira interrogans serovar Copenhageni SBML MML
lil00040 Leptospira interrogans serovar lai SBML MML
lin00040 Listeria innocua SBML MML
lip00040 Lawsonia intracellularis SBML MML
ljo00040 Lactobacillus johnsonii SBML MML
lla00040 Lactococcus lactis subsp. lactis IL1403 SBML MML
llc00040 Lactococcus lactis subsp. cremoris SK11 SBML MML
llm00040 Lactococcus lactis subsp. cremoris MG1363 SBML MML
lma00040 Leishmania major SBML MML
lme00040 Leuconostoc mesenteroides SBML MML
lmf00040 Listeria monocytogenes F2365 SBML MML
lmo00040 Listeria monocytogenes EGD-e SBML MML
lpf00040 Legionella pneumophila Lens SBML MML
lpl00040 Lactobacillus plantarum WCFS1 SBML MML
lpn00040 Legionella pneumophila Philadelphia 1 SBML MML
lpp00040 Legionella pneumophila Paris SBML MML
lre00040 Lactobacillus reuteri DSM 20016 SBML MML
lsa00040 Lactobacillus sakei SBML MML
lsl00040 Lactobacillus salivarius SBML MML
lwe00040 Listeria welshimeri SLCC5334 SBML MML
lxx00040 Leifsonia xyli xyli CTCB07 SBML MML
maa00040 Mycoplasma agalactiae SBML MML
mab00040 Mycobacterium abscessus ATCC 19977T SBML MML
mac00040 Methanosarcina acetivorans SBML MML
mae00040 Methanococcus aeolicus SBML MML
mag00040 Magnetospirillum magneticum SBML MML
maq00040 Marinobacter aquaeolei SBML MML
mar00040 Microcystis aeruginosa SBML MML
mav00040 Mycobacterium avium 104 SBML MML
mba00040 Methanosarcina barkeri SBML MML
mbb00040 Mycobacterium bovis BCG Pasteur 1173P2 SBML MML
mbn00040 Candidatus Methanoregula boonei SBML MML
mbo00040 Mycobacterium bovis AF2122/97 SBML MML
mbr00040 Monosiga brevicollis SBML MML
mbu00040 Methanococcoides burtonii SBML MML
mca00040 Methylococcus capsulatus SBML MML
mcc00040 Macaca mulatta (rhesus monkey) SBML MML
mcp00040 Mycoplasma capricolum SBML MML
mdo00040 Monodelphis domestica (opossum) SBML MML
mem00040 Methanoculleus marisnigri SBML MML
mes00040 Mesorhizobium sp. BNC1 SBML MML
met00040 Methylobacterium sp. 4-46 SBML MML
mex00040 Methylobacterium extorquens SBML MML
mfa00040 Methylobacillus flagellatus SBML MML
mge00040 Mycoplasma genitalium SBML MML
mgi00040 Mycobacterium gilvum SBML MML
mgl00040 Malassezia globosa SBML MML
mgm00040 Magnetococcus sp. MC-1 SBML MML
mgr00040 Magnaporthe grisea SBML MML
mhu00040 Methanospirillum hungatei SBML MML
mja00040 Methanococcus jannaschii SBML MML
mjl00040 Mycobacterium sp. JLS SBML MML
mkm00040 Mycobacterium sp. KMS SBML MML
mla00040 Methanocorpusculum labreanum SBML MML
mle00040 Mycobacterium leprae TN SBML MML
mlo00040 Mesorhizobium loti SBML MML
mma00040 Methanosarcina mazei SBML MML
mmc00040 Mycobacterium sp. MCS SBML MML
mmi00040 Mycobacterium marinum M SBML MML
mmo00040 Mycoplasma mobile SBML MML
mmp00040 Methanococcus maripaludis S2 SBML MML
mmq00040 Methanococcus maripaludis C5 SBML MML
mmr00040 Maricaulis maris SBML MML
mms00040 Minibacterium massiliensis SBML MML
mmu00040 Mus musculus (mouse) SBML MML
mmw00040 Marinomonas sp. MWYL1 SBML MML
mmx00040 Methanococcus maripaludis C6 SBML MML
mmy00040 Mycoplasma mycoides SBML MML
mmz00040 Methanococcus maripaludis C7 SBML MML
mpa00040 Mycobacterium avium paratuberculosis SBML MML
mpe00040 Mycoplasma penetrans SBML MML
mpn00040 Mycoplasma pneumoniae SBML MML
mpt00040 Methylibium petroleiphilum SBML MML
mra00040 Mycobacterium tuberculosis H37Ra SBML MML
mrd00040 Methylobacterium radiotolerans SBML MML
mse00040 Metallosphaera sedula SBML MML
msi00040 Methanobrevibacter smithii ATCC 35061 SBML MML
msm00040 Mycobacterium smegmatis SBML MML
mst00040 Methanosphaera stadtmanae SBML MML
msu00040 Mannheimia succiniciproducens SBML MML
mta00040 Moorella thermoacetica SBML MML
mtc00040 Mycobacterium tuberculosis CDC1551 SBML MML
mtf00040 Mycobacterium tuberculosis F11 SBML MML
mth00040 Methanobacterium thermoautotrophicum SBML MML
mtp00040 Methanosaeta thermophila SBML MML
mtu00040 Mycobacterium tuberculosis H37Rv SBML MML
mul00040 Mycobacterium ulcerans SBML MML
mva00040 Mycobacterium vanbaalenii SBML MML
mvn00040 Methanococcus vannielii SBML MML
mxa00040 Myxococcus xanthus SBML MML
nar00040 Novosphingobium aromaticivorans SBML MML
nca00040 Nocardioides sp. JS614 SBML MML
ncr00040 Neurospora crassa SBML MML
net00040 Nitrosomonas eutropha SBML MML
neu00040 Nitrosomonas europaea SBML MML
nfa00040 Nocardia farcinica SBML MML
ngo00040 Neisseria gonorrhoeae SBML MML
nha00040 Nitrobacter hamburgensis SBML MML
nis00040 Nitratiruptor sp. SB155-2 SBML MML
nma00040 Neisseria meningitidis Z2491 (serogroup A) SBML MML
nmc00040 Neisseria meningitidis FAM18 (serogroup C) SBML MML
nme00040 Neisseria meningitidis MC58 (serogroup B) SBML MML
nmn00040 Neisseria meningitidis 053442 (serogroup C) SBML MML
nmu00040 Nitrosospira multiformis SBML MML
noc00040 Nitrosococcus oceani SBML MML
nph00040 Natronomonas pharaonis SBML MML
npu00040 Nostoc punctiforme SBML MML
nve00040 Nematostella vectensis (sea anemone) SBML MML
nwi00040 Nitrobacter winogradskyi SBML MML
oaa00040 Ornithorhynchus anatinus (platypus) SBML MML
oan00040 Ochrobactrum anthropi SBML MML
oih00040 Oceanobacillus iheyensis SBML MML
olu00040 Ostreococcus lucimarinus SBML MML
ooe00040 Oenococcus oeni SBML MML
osa00040 Oryza sativa japonica (Japanese rice) SBML MML
ote00040 Opitutus terrae SBML MML
pab00040 Pyrococcus abyssi SBML MML
pac00040 Propionibacterium acnes SBML MML
pae00040 Pseudomonas aeruginosa PAO1 SBML MML
pan00040 Podospora anserina SBML MML
pap00040 Pseudomonas aeruginosa PA7 SBML MML
par00040 Psychrobacter arcticum SBML MML
pat00040 Pseudoalteromonas atlantica SBML MML
pau00040 Pseudomonas aeruginosa UCBPP-PA14 SBML MML
pca00040 Pelobacter carbinolicus SBML MML
pcr00040 Psychrobacter cryohalolentis SBML MML
pcu00040 Candidatus Protochlamydia amoebophila SBML MML
pde00040 Paracoccus denitrificans SBML MML
pdi00040 Parabacteroides distasonis SBML MML
pen00040 Pseudomonas entomophila SBML MML
pfl00040 Pseudomonas fluorescens Pf-5 SBML MML
pfo00040 Pseudomonas fluorescens Pf0-1 SBML MML
pfu00040 Pyrococcus furiosus SBML MML
pgi00040 Porphyromonas gingivalis W83 SBML MML
pgn00040 Porphyromonas gingivalis ATCC 33277 SBML MML
pha00040 Pseudoalteromonas haloplanktis SBML MML
pic00040 Pichia stipitis SBML MML
pin00040 Psychromonas ingrahamii SBML MML
pis00040 Pyrobaculum islandicum SBML MML
pla00040 Parvibaculum lavamentivorans SBML MML
plt00040 Pelodictyon luteolum SBML MML
plu00040 Photorhabdus luminescens SBML MML
pma00040 Prochlorococcus marinus SS120 SBML MML
pmb00040 Prochlorococcus marinus AS9601 SBML MML
pmc00040 Prochlorococcus marinus MIT 9515 SBML MML
pme00040 Prochlorococcus marinus NATL1A SBML MML
pmf00040 Prochlorococcus marinus MIT 9303 SBML MML
pmg00040 Prochlorococcus marinus MIT 9301 SBML MML
pmh00040 Prochlorococcus marinus MIT 9215 SBML MML
pmi00040 Prochlorococcus marinus MIT9312 SBML MML
pmj00040 Prochlorococcus marinus MIT 9211 SBML MML
pmm00040 Prochlorococcus marinus MED4 SBML MML
pmn00040 Prochlorococcus marinus NATL2A SBML MML
pmo00040 Petrotoga mobilis SBML MML
pmt00040 Prochlorococcus marinus MIT9313 SBML MML
pmu00040 Pasteurella multocida SBML MML
pmy00040 Pseudomonas mendocina SBML MML
pna00040 Polaromonas naphthalenivorans SBML MML
pne00040 Polynucleobacter necessarius SBML MML
pnu00040 Polynucleobacter sp. QLW-P1DMWA-1 SBML MML
pol00040 Polaromonas sp. JS666 SBML MML
ppd00040 Pelobacter propionicus SBML MML
ppf00040 Pseudomonas putida F1 SBML MML
ppg00040 Pseudomonas putida GB-1 SBML MML
ppp00040 Physcomitrella patens subsp. patens SBML MML
ppr00040 Photobacterium profundum SBML MML
ppu00040 Pseudomonas putida KT2440 SBML MML
ppw00040 Pseudomonas putida W619 SBML MML
prw00040 Psychrobacter sp. PRwf-1 SBML MML
psa00040 Pseudomonas stutzeri SBML MML
psb00040 Pseudomonas syringae pv. syringae B728a SBML MML
psp00040 Pseudomonas syringae pv. phaseolicola 1448A SBML MML
pst00040 Pseudomonas syringae pv. tomato DC3000 SBML MML
pth00040 Pelotomaculum thermopropionicum SBML MML
pto00040 Picrophilus torridus SBML MML
ptr00040 Pan troglodytes (chimpanzee) SBML MML
pub00040 Candidatus Pelagibacter ubique SBML MML
pvi00040 Prosthecochloris vibrioformis SBML MML
rba00040 Rhodopirellula baltica SBML MML
rca00040 Roseiflexus castenholzii DSM13941 SBML MML
rci00040 Uncultured methanogenic archaeon RC-I SBML MML
rde00040 Roseobacter denitrificans SBML MML
rec00040 Rhizobium etli CIAT 652 SBML MML
reh00040 Ralstonia eutropha H16 SBML MML
ret00040 Rhizobium etli CFN 42 SBML MML
reu00040 Ralstonia eutropha JMP134 SBML MML
rfr00040 Rhodoferax ferrireducens SBML MML
rha00040 Rhodococcus sp. RHA1 SBML MML
rle00040 Rhizobium leguminosarum SBML MML
rma00040 Candidatus Ruthia magnifica SBML MML
rme00040 Ralstonia metallidurans SBML MML
rno00040 Rattus norvegicus (rat) SBML MML
rpa00040 Rhodopseudomonas palustris CGA009 SBML MML
rpb00040 Rhodopseudomonas palustris HaA2 SBML MML
rpc00040 Rhodopseudomonas palustris BisB18 SBML MML
rpd00040 Rhodopseudomonas palustris BisB5 SBML MML
rpe00040 Rhodopseudomonas palustris BisA53 SBML MML
rpt00040 Rhodopseudomonas palustris TIE-1 SBML MML
rrs00040 Roseiflexus sp. RS-1 SBML MML
rru00040 Rhodospirillum rubrum SBML MML
rsa00040 Renibacterium salmoninarum SBML MML
rsh00040 Rhodobacter sphaeroides ATCC 17029 SBML MML
rso00040 Ralstonia solanacearum SBML MML
rsp00040 Rhodobacter sphaeroides 2.4.1 SBML MML
rsq00040 Rhodobacter sphaeroides ATCC 17025 SBML MML
rxy00040 Rubrobacter xylanophilus SBML MML
saa00040 Staphylococcus aureus USA300 SBML MML
sab00040 Staphylococcus aureus RF122 SBML MML
sac00040 Staphylococcus aureus COL SBML MML
sae00040 Staphylococcus aureus Newman SBML MML
sag00040 Streptococcus agalactiae 2603 (serotype V) SBML MML
sah00040 Staphylococcus aureus JH1 SBML MML
sai00040 Sulfolobus acidocaldarius SBML MML
saj00040 Staphylococcus aureus JH9 SBML MML
sak00040 Streptococcus agalactiae A909 (serotype Ia) SBML MML
sal00040 Sphingopyxis alaskensis SBML MML
sam00040 Staphylococcus aureus MW2 SBML MML
san00040 Streptococcus agalactiae NEM316 (serotype III) SBML MML
sao00040 Staphylococcus aureus NCTC8325 SBML MML
saq00040 Salinispora arenicola SBML MML
sar00040 Staphylococcus aureus MRSA252 SBML MML
sas00040 Staphylococcus aureus MSSA476 SBML MML
sat00040 Syntrophus aciditrophicus SBML MML
sau00040 Staphylococcus aureus N315 SBML MML
sav00040 Staphylococcus aureus Mu50 SBML MML
saw00040 Staphylococcus aureus Mu3 SBML MML
sax00040 Staphylococcus aureus USA300 TCH1516 SBML MML
saz00040 Shewanella amazonensis SBML MML
sbc00040 Shigella boydii CDC 3083-94 SBML MML
sbl00040 Shewanella baltica OS155 SBML MML
sbm00040 Shewanella baltica OS185 SBML MML
sbn00040 Shewanella baltica OS195 SBML MML
sbo00040 Shigella boydii Sb227 SBML MML
sce00040 Saccharomyces cerevisiae SBML MML
scl00040 Sorangium cellulosum SBML MML
sco00040 Streptomyces coelicolor SBML MML
sde00040 Saccharophagus degradans SBML MML
sdn00040 Shewanella denitrificans SBML MML
sdy00040 Shigella dysenteriae SBML MML
sec00040 Salmonella enterica subsp. enterica serovar Choleraesuis SBML MML
sen00040 Saccharopolyspora erythraea SBML MML
sep00040 Staphylococcus epidermidis ATCC 12228 SBML MML
ser00040 Staphylococcus epidermidis RP62A SBML MML
ses00040 Salmonella enterica subsp. arizonae SBML MML
sfl00040 Shigella flexneri 301 (serotype 2a) SBML MML
sfr00040 Shewanella frigidimarina SBML MML
sfu00040 Syntrophobacter fumaroxidans SBML MML
sfv00040 Shigella flexneri 8401 (serotype 5b) SBML MML
sfx00040 Shigella flexneri 2457T (serotype 2a) SBML MML
sgl00040 Sodalis glossinidius SBML MML
sgo00040 Streptococcus gordonii SBML MML
sgr00040 Streptomyces griseus SBML MML
sha00040 Staphylococcus haemolyticus SBML MML
she00040 Shewanella sp. MR-4 SBML MML
shl00040 Shewanella halifaxensis SBML MML
shm00040 Shewanella sp. MR-7 SBML MML
shn00040 Shewanella sp. ANA-3 SBML MML
shw00040 Shewanella sp. W3-18-1 SBML MML
sil00040 Ruegeria pomeroyi SBML MML
sit00040 Silicibacter sp. TM1040 SBML MML
slo00040 Shewanella loihica SBML MML
sma00040 Streptomyces avermitilis SBML MML
smd00040 Sinorhizobium medicae SBML MML
sme00040 Sinorhizobium meliloti SBML MML
sml00040 Stenotrophomonas maltophilia SBML MML
smu00040 Streptococcus mutans SBML MML
son00040 Shewanella oneidensis SBML MML
spa00040 Streptococcus pyogenes MGAS10394 (serotype M6) SBML MML
spb00040 Streptococcus pyogenes MGAS6180 (serotype M28) SBML MML
spc00040 Shewanella putrefaciens SBML MML
spd00040 Streptococcus pneumoniae D39 SBML MML
spe00040 Serratia proteamaculans SBML MML
spf00040 Streptococcus pyogenes Manfredo (serotype M5) SBML MML
spg00040 Streptococcus pyogenes MGAS315 (serotype M3) SBML MML
sph00040 Streptococcus pyogenes MGAS10270 (serotype M2) SBML MML
spi00040 Streptococcus pyogenes MGAS10750 (serotype M4) SBML MML
spj00040 Streptococcus pyogenes MGAS2096 (serotype M12) SBML MML
spk00040 Streptococcus pyogenes MGAS9429 (serotype M12) SBML MML
spl00040 Shewanella pealeana SBML MML
spm00040 Streptococcus pyogenes MGAS8232 (serotype M18) SBML MML
spn00040 Streptococcus pneumoniae TIGR4 SBML MML
spo00040 Schizosaccharomyces pombe SBML MML
spq00040 Salmonella enterica subsp. enterica serovar Paratyphi B SBML MML
spr00040 Streptococcus pneumoniae R6 SBML MML
sps00040 Streptococcus pyogenes SSI-1 (serotype M3) SBML MML
spt00040 Salmonella enterica subsp. enterica serovar Paratyphi A SBML MML
spu00040 Strongylocentrotus purpuratus (purple sea urchin) SBML MML
spv00040 Streptococcus pneumoniae Hungary19A 6 SBML MML
spw00040 Streptococcus pneumoniae CGSP14 (serotype 14) SBML MML
spy00040 Streptococcus pyogenes SF370 (serotype M1) SBML MML
spz00040 Streptococcus pyogenes MGAS5005 (serotype M1) SBML MML
sru00040 Salinibacter ruber SBML MML
ssa00040 Streptococcus sanguinis SBML MML
ssc00040 Sus scrofa (pig) SBML MML
sse00040 Shewanella sediminis SBML MML
ssn00040 Shigella sonnei SBML MML
sso00040 Sulfolobus solfataricus SBML MML
ssp00040 Staphylococcus saprophyticus SBML MML
ssu00040 Streptococcus suis 05ZYH33 SBML MML
ssv00040 Streptococcus suis 98HAH33 SBML MML
stc00040 Streptococcus thermophilus CNRZ1066 SBML MML
ste00040 Streptococcus thermophilus LMD-9 SBML MML
sth00040 Symbiobacterium thermophilum SBML MML
stl00040 Streptococcus thermophilus LMG18311 SBML MML
stm00040 Salmonella typhimurium LT2 SBML MML
stp00040 Salinispora tropica SBML MML
stt00040 Salmonella enterica subsp. enterica serovar Typhi Ty2 SBML MML
sty00040 Salmonella enterica subsp. enterica serovar Typhi CT18 SBML MML
sul00040 Sulfurihydrogenibium sp. YO3AOP1 SBML MML
sun00040 Sulfurovum sp. NBC37-1 SBML MML
sus00040 Solibacter usitatus SBML MML
swd00040 Shewanella woodyi ATCC 51908 SBML MML
swi00040 Sphingomonas wittichii SBML MML
swo00040 Syntrophomonas wolfei SBML MML
syc00040 Synechococcus elongatus PCC6301 SBML MML
syd00040 Synechococcus sp. CC9605 SBML MML
sye00040 Synechococcus sp. CC9902 SBML MML
syf00040 Synechococcus elongatus PCC7942 SBML MML
syg00040 Synechococcus sp. CC9311 SBML MML
syn00040 Synechocystis sp. PCC6803 SBML MML
syp00040 Synechococcus sp. PCC7002 SBML MML
syr00040 Synechococcus sp. RCC307 SBML MML
syw00040 Synechococcus sp. WH8102 SBML MML
syx00040 Synechococcus sp. WH7803 SBML MML
tac00040 Thermoplasma acidophilum SBML MML
tbd00040 Thiobacillus denitrificans SBML MML
tbr00040 Trypanosoma brucei SBML MML
tca00040 Tribolium castaneum (red flour beetle) SBML MML
tcr00040 Trypanosoma cruzi SBML MML
tcx00040 Thiomicrospira crunogena SBML MML
tdn00040 Thiomicrospira denitrificans SBML MML
tel00040 Thermosynechococcus elongatus SBML MML
ter00040 Trichodesmium erythraeum SBML MML
tet00040 Tetrahymena thermophila SBML MML
tex00040 Thermoanaerobacter sp. X514 SBML MML
tfu00040 Thermobifida fusca SBML MML
tle00040 Thermotoga lettingae SBML MML
tma00040 Thermotoga maritima SBML MML
tme00040 Thermosipho melanesiensis SBML MML
tpd00040 Thermoanaerobacter pseudethanolicus SBML MML
tpe00040 Thermofilum pendens SBML MML
tpt00040 Thermotoga petrophila SBML MML
trq00040 Thermotoga sp. RQ2 SBML MML
tte00040 Thermoanaerobacter tengcongensis SBML MML
tth00040 Thermus thermophilus HB27 SBML MML
ttj00040 Thermus thermophilus HB8 SBML MML
tva00040 Trichomonas vaginalis SBML MML
tvo00040 Thermoplasma volcanium SBML MML
twh00040 Tropheryma whipplei Twist SBML MML
tws00040 Tropheryma whipplei TW08/27 SBML MML
uma00040 Ustilago maydis SBML MML
vch00040 Vibrio cholerae O1 SBML MML
vco00040 Vibrio cholerae O395 SBML MML
vei00040 Verminephrobacter eiseniae SBML MML
vfi00040 Vibrio fischeri SBML MML
vha00040 Vibrio harveyi SBML MML
vok00040 Candidatus Vesicomyosocius okutanii SBML MML
vpa00040 Vibrio parahaemolyticus SBML MML
vpo00040 Vanderwaltozyma polyspora SBML MML
vvu00040 Vibrio vulnificus CMCP6 SBML MML
vvy00040 Vibrio vulnificus YJ016 SBML MML
wbr00040 Wigglesworthia glossinidia SBML MML
wol00040 Wolbachia wMel SBML MML
wsu00040 Wolinella succinogenes SBML MML
xac00040 Xanthomonas axonopodis SBML MML
xau00040 Xanthobacter autotrophicus SBML MML
xcb00040 Xanthomonas campestris pv. campestris 8004 SBML MML
xcc00040 Xanthomonas campestris pv. campestris ATCC 33913 SBML MML
xcv00040 Xanthomonas campestris pv. vesicatoria SBML MML
xfa00040 Xylella fastidiosa 9a5c SBML MML
xfm00040 Xylella fastidiosa M12 SBML MML
xfn00040 Xylella fastidiosa M23 SBML MML
xft00040 Xylella fastidiosa Temecula1 SBML MML
xla00040 Xenopus laevis (African clawed frog) SBML MML
xom00040 Xanthomonas oryzae MAFF311018 SBML MML
xoo00040 Xanthomonas oryzae KACC10331 SBML MML
xtr00040 Xenopus tropicalis (western clawed frog) SBML MML
yen00040 Yersinia enterocolitica SBML MML
yli00040 Yarrowia lipolytica SBML MML
ypa00040 Yersinia pestis Antiqua SBML MML
ype00040 Yersinia pestis CO92 SBML MML
ypg00040 Yersinia pestis Angola SBML MML
ypi00040 Yersinia pseudotuberculosis IP31758 SBML MML
ypk00040 Yersinia pestis KIM SBML MML
ypm00040 Yersinia pestis Mediaevails SBML MML
ypn00040 Yersinia pestis Nepal516 SBML MML
ypp00040 Yersinia pestis Pestoides SBML MML
yps00040 Yersinia pseudotuberculosis IP32953 SBML MML
ypy00040 Yersinia pseudotuberculosis YPIII SBML MML
zmo00040 Zymomonas mobilis SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.