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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ypp: Yersinia pestis Pestoides

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ypp00010 Glycolysis / Gluconeogenesis SBML MML
ypp00020 Citrate cycle (TCA cycle) SBML MML
ypp00030 Pentose phosphate pathway SBML MML
ypp00031 (Undocumented) SBML MML
ypp00040 Pentose and glucuronate interconversions SBML MML
ypp00051 Fructose and mannose metabolism SBML MML
ypp00052 Galactose metabolism SBML MML
ypp00053 Ascorbate and aldarate metabolism SBML MML
ypp00061 Fatty acid biosynthesis SBML MML
ypp00062 Fatty acid elongation in mitochondria SBML MML
ypp00071 Fatty acid metabolism SBML MML
ypp00100 (Undocumented) SBML MML
ypp00120 (Undocumented) SBML MML
ypp00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ypp00150 Androgen and estrogen metabolism SBML MML
ypp00220 (Undocumented) SBML MML
ypp00230 Purine metabolism SBML MML
ypp00240 Pyrimidine metabolism SBML MML
ypp00251 (Undocumented) SBML MML
ypp00252 (Undocumented) SBML MML
ypp00260 Glycine, serine and threonine metabolism SBML MML
ypp00271 (Undocumented) SBML MML
ypp00272 (Undocumented) SBML MML
ypp00280 Valine, leucine and isoleucine degradation SBML MML
ypp00281 Geraniol degradation SBML MML
ypp00290 Valine, leucine and isoleucine biosynthesis SBML MML
ypp00300 Lysine biosynthesis SBML MML
ypp00310 Lysine degradation SBML MML
ypp00330 Arginine and proline metabolism SBML MML
ypp00340 Histidine metabolism SBML MML
ypp00350 Tyrosine metabolism SBML MML
ypp00360 Phenylalanine metabolism SBML MML
ypp00361 gamma-Hexachlorocyclohexane degradation SBML MML
ypp00362 (Undocumented) SBML MML
ypp00363 Bisphenol A degradation SBML MML
ypp00364 Fluorobenzoate degradation SBML MML
ypp00380 Tryptophan metabolism SBML MML
ypp00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ypp00401 Novobiocin biosynthesis SBML MML
ypp00410 beta-Alanine metabolism SBML MML
ypp00430 Taurine and hypotaurine metabolism SBML MML
ypp00450 Selenoamino acid metabolism SBML MML
ypp00460 (Undocumented) SBML MML
ypp00471 D-Glutamine and D-glutamate metabolism SBML MML
ypp00473 D-Alanine metabolism SBML MML
ypp00480 Glutathione metabolism SBML MML
ypp00500 Starch and sucrose metabolism SBML MML
ypp00520 Amino sugar and nucleotide sugar metabolism SBML MML
ypp00521 Streptomycin biosynthesis SBML MML
ypp00523 Polyketide sugar unit biosynthesis SBML MML
ypp00530 (Undocumented) SBML MML
ypp00540 Lipopolysaccharide biosynthesis SBML MML
ypp00550 Peptidoglycan biosynthesis SBML MML
ypp00561 Glycerolipid metabolism SBML MML
ypp00562 Inositol phosphate metabolism SBML MML
ypp00564 Glycerophospholipid metabolism SBML MML
ypp00590 Arachidonic acid metabolism SBML MML
ypp00592 alpha-Linolenic acid metabolism SBML MML
ypp00600 Sphingolipid metabolism SBML MML
ypp00620 Pyruvate metabolism SBML MML
ypp00624 1- and 2-Methylnaphthalene degradation SBML MML
ypp00626 Naphthalene and anthracene degradation SBML MML
ypp00627 1,4-Dichlorobenzene degradation SBML MML
ypp00628 Fluorene degradation SBML MML
ypp00630 Glyoxylate and dicarboxylate metabolism SBML MML
ypp00632 (Undocumented) SBML MML
ypp00633 Trinitrotoluene degradation SBML MML
ypp00640 Propanoate metabolism SBML MML
ypp00641 3-Chloroacrylic acid degradation SBML MML
ypp00642 Ethylbenzene degradation SBML MML
ypp00650 Butanoate metabolism SBML MML
ypp00660 C5-Branched dibasic acid metabolism SBML MML
ypp00670 One carbon pool by folate SBML MML
ypp00680 Methane metabolism SBML MML
ypp00710 (Undocumented) SBML MML
ypp00720 (Undocumented) SBML MML
ypp00730 Thiamine metabolism SBML MML
ypp00740 Riboflavin metabolism SBML MML
ypp00750 Vitamin B6 metabolism SBML MML
ypp00760 Nicotinate and nicotinamide metabolism SBML MML
ypp00770 Pantothenate and CoA biosynthesis SBML MML
ypp00780 Biotin metabolism SBML MML
ypp00785 Lipoic acid metabolism SBML MML
ypp00790 Folate biosynthesis SBML MML
ypp00791 Atrazine degradation SBML MML
ypp00860 Porphyrin and chlorophyll metabolism SBML MML
ypp00900 Terpenoid backbone biosynthesis SBML MML
ypp00903 (Undocumented) SBML MML
ypp00910 Nitrogen metabolism SBML MML
ypp00920 Sulfur metabolism SBML MML
ypp00930 Caprolactam degradation SBML MML
ypp00940 (Undocumented) SBML MML
ypp00950 (Undocumented) SBML MML
ypp00960 (Undocumented) SBML MML
ypp00970 Aminoacyl-tRNA biosynthesis SBML MML
ypp00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
ypp00982 (Undocumented) SBML MML
ypp00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.