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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ypn: Yersinia pestis Nepal516

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ypn00010 Glycolysis / Gluconeogenesis SBML MML
ypn00020 Citrate cycle (TCA cycle) SBML MML
ypn00030 Pentose phosphate pathway SBML MML
ypn00031 (Undocumented) SBML MML
ypn00040 Pentose and glucuronate interconversions SBML MML
ypn00051 Fructose and mannose metabolism SBML MML
ypn00052 Galactose metabolism SBML MML
ypn00053 Ascorbate and aldarate metabolism SBML MML
ypn00061 Fatty acid biosynthesis SBML MML
ypn00062 Fatty acid elongation in mitochondria SBML MML
ypn00071 Fatty acid metabolism SBML MML
ypn00100 (Undocumented) SBML MML
ypn00120 (Undocumented) SBML MML
ypn00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ypn00220 (Undocumented) SBML MML
ypn00230 Purine metabolism SBML MML
ypn00240 Pyrimidine metabolism SBML MML
ypn00251 (Undocumented) SBML MML
ypn00252 (Undocumented) SBML MML
ypn00260 Glycine, serine and threonine metabolism SBML MML
ypn00271 (Undocumented) SBML MML
ypn00272 (Undocumented) SBML MML
ypn00280 Valine, leucine and isoleucine degradation SBML MML
ypn00281 Geraniol degradation SBML MML
ypn00290 Valine, leucine and isoleucine biosynthesis SBML MML
ypn00300 Lysine biosynthesis SBML MML
ypn00310 Lysine degradation SBML MML
ypn00330 Arginine and proline metabolism SBML MML
ypn00340 Histidine metabolism SBML MML
ypn00350 Tyrosine metabolism SBML MML
ypn00360 Phenylalanine metabolism SBML MML
ypn00361 gamma-Hexachlorocyclohexane degradation SBML MML
ypn00362 (Undocumented) SBML MML
ypn00364 Fluorobenzoate degradation SBML MML
ypn00380 Tryptophan metabolism SBML MML
ypn00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ypn00401 Novobiocin biosynthesis SBML MML
ypn00410 beta-Alanine metabolism SBML MML
ypn00430 Taurine and hypotaurine metabolism SBML MML
ypn00450 Selenoamino acid metabolism SBML MML
ypn00460 (Undocumented) SBML MML
ypn00471 D-Glutamine and D-glutamate metabolism SBML MML
ypn00473 D-Alanine metabolism SBML MML
ypn00480 Glutathione metabolism SBML MML
ypn00500 Starch and sucrose metabolism SBML MML
ypn00520 Amino sugar and nucleotide sugar metabolism SBML MML
ypn00521 Streptomycin biosynthesis SBML MML
ypn00523 Polyketide sugar unit biosynthesis SBML MML
ypn00530 (Undocumented) SBML MML
ypn00540 Lipopolysaccharide biosynthesis SBML MML
ypn00550 Peptidoglycan biosynthesis SBML MML
ypn00561 Glycerolipid metabolism SBML MML
ypn00562 Inositol phosphate metabolism SBML MML
ypn00564 Glycerophospholipid metabolism SBML MML
ypn00565 Ether lipid metabolism SBML MML
ypn00590 Arachidonic acid metabolism SBML MML
ypn00592 alpha-Linolenic acid metabolism SBML MML
ypn00600 Sphingolipid metabolism SBML MML
ypn00620 Pyruvate metabolism SBML MML
ypn00624 1- and 2-Methylnaphthalene degradation SBML MML
ypn00627 1,4-Dichlorobenzene degradation SBML MML
ypn00628 Fluorene degradation SBML MML
ypn00630 Glyoxylate and dicarboxylate metabolism SBML MML
ypn00632 (Undocumented) SBML MML
ypn00633 Trinitrotoluene degradation SBML MML
ypn00640 Propanoate metabolism SBML MML
ypn00641 3-Chloroacrylic acid degradation SBML MML
ypn00642 Ethylbenzene degradation SBML MML
ypn00650 Butanoate metabolism SBML MML
ypn00660 C5-Branched dibasic acid metabolism SBML MML
ypn00670 One carbon pool by folate SBML MML
ypn00680 Methane metabolism SBML MML
ypn00710 (Undocumented) SBML MML
ypn00720 (Undocumented) SBML MML
ypn00730 Thiamine metabolism SBML MML
ypn00740 Riboflavin metabolism SBML MML
ypn00750 Vitamin B6 metabolism SBML MML
ypn00760 Nicotinate and nicotinamide metabolism SBML MML
ypn00770 Pantothenate and CoA biosynthesis SBML MML
ypn00780 Biotin metabolism SBML MML
ypn00785 Lipoic acid metabolism SBML MML
ypn00790 Folate biosynthesis SBML MML
ypn00860 Porphyrin and chlorophyll metabolism SBML MML
ypn00900 Terpenoid backbone biosynthesis SBML MML
ypn00903 (Undocumented) SBML MML
ypn00910 Nitrogen metabolism SBML MML
ypn00920 Sulfur metabolism SBML MML
ypn00930 Caprolactam degradation SBML MML
ypn00940 (Undocumented) SBML MML
ypn00950 (Undocumented) SBML MML
ypn00960 (Undocumented) SBML MML
ypn00970 Aminoacyl-tRNA biosynthesis SBML MML
ypn00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
ypn00982 (Undocumented) SBML MML
ypn00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.