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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ypk: Yersinia pestis KIM

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ypk00010 Glycolysis / Gluconeogenesis SBML MML
ypk00020 Citrate cycle (TCA cycle) SBML MML
ypk00030 Pentose phosphate pathway SBML MML
ypk00031 (Undocumented) SBML MML
ypk00040 Pentose and glucuronate interconversions SBML MML
ypk00051 Fructose and mannose metabolism SBML MML
ypk00052 Galactose metabolism SBML MML
ypk00053 Ascorbate and aldarate metabolism SBML MML
ypk00061 Fatty acid biosynthesis SBML MML
ypk00062 Fatty acid elongation in mitochondria SBML MML
ypk00071 Fatty acid metabolism SBML MML
ypk00100 (Undocumented) SBML MML
ypk00120 (Undocumented) SBML MML
ypk00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ypk00220 (Undocumented) SBML MML
ypk00230 Purine metabolism SBML MML
ypk00240 Pyrimidine metabolism SBML MML
ypk00251 (Undocumented) SBML MML
ypk00252 (Undocumented) SBML MML
ypk00260 Glycine, serine and threonine metabolism SBML MML
ypk00271 (Undocumented) SBML MML
ypk00272 (Undocumented) SBML MML
ypk00280 Valine, leucine and isoleucine degradation SBML MML
ypk00281 Geraniol degradation SBML MML
ypk00290 Valine, leucine and isoleucine biosynthesis SBML MML
ypk00300 Lysine biosynthesis SBML MML
ypk00310 Lysine degradation SBML MML
ypk00330 Arginine and proline metabolism SBML MML
ypk00340 Histidine metabolism SBML MML
ypk00350 Tyrosine metabolism SBML MML
ypk00360 Phenylalanine metabolism SBML MML
ypk00361 gamma-Hexachlorocyclohexane degradation SBML MML
ypk00362 (Undocumented) SBML MML
ypk00364 Fluorobenzoate degradation SBML MML
ypk00380 Tryptophan metabolism SBML MML
ypk00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ypk00401 Novobiocin biosynthesis SBML MML
ypk00410 beta-Alanine metabolism SBML MML
ypk00430 Taurine and hypotaurine metabolism SBML MML
ypk00450 Selenoamino acid metabolism SBML MML
ypk00460 (Undocumented) SBML MML
ypk00471 D-Glutamine and D-glutamate metabolism SBML MML
ypk00473 D-Alanine metabolism SBML MML
ypk00480 Glutathione metabolism SBML MML
ypk00500 Starch and sucrose metabolism SBML MML
ypk00520 Amino sugar and nucleotide sugar metabolism SBML MML
ypk00521 Streptomycin biosynthesis SBML MML
ypk00523 Polyketide sugar unit biosynthesis SBML MML
ypk00530 (Undocumented) SBML MML
ypk00540 Lipopolysaccharide biosynthesis SBML MML
ypk00550 Peptidoglycan biosynthesis SBML MML
ypk00561 Glycerolipid metabolism SBML MML
ypk00562 Inositol phosphate metabolism SBML MML
ypk00564 Glycerophospholipid metabolism SBML MML
ypk00590 Arachidonic acid metabolism SBML MML
ypk00592 alpha-Linolenic acid metabolism SBML MML
ypk00600 Sphingolipid metabolism SBML MML
ypk00620 Pyruvate metabolism SBML MML
ypk00624 1- and 2-Methylnaphthalene degradation SBML MML
ypk00627 1,4-Dichlorobenzene degradation SBML MML
ypk00628 Fluorene degradation SBML MML
ypk00630 Glyoxylate and dicarboxylate metabolism SBML MML
ypk00632 (Undocumented) SBML MML
ypk00633 Trinitrotoluene degradation SBML MML
ypk00640 Propanoate metabolism SBML MML
ypk00641 3-Chloroacrylic acid degradation SBML MML
ypk00650 Butanoate metabolism SBML MML
ypk00660 C5-Branched dibasic acid metabolism SBML MML
ypk00670 One carbon pool by folate SBML MML
ypk00680 Methane metabolism SBML MML
ypk00710 (Undocumented) SBML MML
ypk00720 (Undocumented) SBML MML
ypk00730 Thiamine metabolism SBML MML
ypk00740 Riboflavin metabolism SBML MML
ypk00750 Vitamin B6 metabolism SBML MML
ypk00760 Nicotinate and nicotinamide metabolism SBML MML
ypk00770 Pantothenate and CoA biosynthesis SBML MML
ypk00780 Biotin metabolism SBML MML
ypk00785 Lipoic acid metabolism SBML MML
ypk00790 Folate biosynthesis SBML MML
ypk00860 Porphyrin and chlorophyll metabolism SBML MML
ypk00900 Terpenoid backbone biosynthesis SBML MML
ypk00903 (Undocumented) SBML MML
ypk00910 Nitrogen metabolism SBML MML
ypk00920 Sulfur metabolism SBML MML
ypk00930 Caprolactam degradation SBML MML
ypk00940 (Undocumented) SBML MML
ypk00950 (Undocumented) SBML MML
ypk00970 Aminoacyl-tRNA biosynthesis SBML MML
ypk00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
ypk00982 (Undocumented) SBML MML
ypk00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.