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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ypg: Yersinia pestis Angola

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ypg00010 Glycolysis / Gluconeogenesis SBML MML
ypg00020 Citrate cycle (TCA cycle) SBML MML
ypg00030 Pentose phosphate pathway SBML MML
ypg00031 (Undocumented) SBML MML
ypg00040 Pentose and glucuronate interconversions SBML MML
ypg00051 Fructose and mannose metabolism SBML MML
ypg00052 Galactose metabolism SBML MML
ypg00053 Ascorbate and aldarate metabolism SBML MML
ypg00061 Fatty acid biosynthesis SBML MML
ypg00062 Fatty acid elongation in mitochondria SBML MML
ypg00071 Fatty acid metabolism SBML MML
ypg00100 (Undocumented) SBML MML
ypg00120 (Undocumented) SBML MML
ypg00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ypg00150 Androgen and estrogen metabolism SBML MML
ypg00220 (Undocumented) SBML MML
ypg00230 Purine metabolism SBML MML
ypg00240 Pyrimidine metabolism SBML MML
ypg00251 (Undocumented) SBML MML
ypg00252 (Undocumented) SBML MML
ypg00260 Glycine, serine and threonine metabolism SBML MML
ypg00271 (Undocumented) SBML MML
ypg00272 (Undocumented) SBML MML
ypg00280 Valine, leucine and isoleucine degradation SBML MML
ypg00281 Geraniol degradation SBML MML
ypg00290 Valine, leucine and isoleucine biosynthesis SBML MML
ypg00300 Lysine biosynthesis SBML MML
ypg00310 Lysine degradation SBML MML
ypg00330 Arginine and proline metabolism SBML MML
ypg00340 Histidine metabolism SBML MML
ypg00350 Tyrosine metabolism SBML MML
ypg00360 Phenylalanine metabolism SBML MML
ypg00361 gamma-Hexachlorocyclohexane degradation SBML MML
ypg00362 (Undocumented) SBML MML
ypg00363 Bisphenol A degradation SBML MML
ypg00364 Fluorobenzoate degradation SBML MML
ypg00380 Tryptophan metabolism SBML MML
ypg00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ypg00401 Novobiocin biosynthesis SBML MML
ypg00410 beta-Alanine metabolism SBML MML
ypg00430 Taurine and hypotaurine metabolism SBML MML
ypg00450 Selenoamino acid metabolism SBML MML
ypg00460 (Undocumented) SBML MML
ypg00471 D-Glutamine and D-glutamate metabolism SBML MML
ypg00473 D-Alanine metabolism SBML MML
ypg00480 Glutathione metabolism SBML MML
ypg00500 Starch and sucrose metabolism SBML MML
ypg00520 Amino sugar and nucleotide sugar metabolism SBML MML
ypg00521 Streptomycin biosynthesis SBML MML
ypg00523 Polyketide sugar unit biosynthesis SBML MML
ypg00530 (Undocumented) SBML MML
ypg00540 Lipopolysaccharide biosynthesis SBML MML
ypg00550 Peptidoglycan biosynthesis SBML MML
ypg00561 Glycerolipid metabolism SBML MML
ypg00562 Inositol phosphate metabolism SBML MML
ypg00564 Glycerophospholipid metabolism SBML MML
ypg00590 Arachidonic acid metabolism SBML MML
ypg00592 alpha-Linolenic acid metabolism SBML MML
ypg00600 Sphingolipid metabolism SBML MML
ypg00620 Pyruvate metabolism SBML MML
ypg00624 1- and 2-Methylnaphthalene degradation SBML MML
ypg00626 Naphthalene and anthracene degradation SBML MML
ypg00627 1,4-Dichlorobenzene degradation SBML MML
ypg00628 Fluorene degradation SBML MML
ypg00630 Glyoxylate and dicarboxylate metabolism SBML MML
ypg00632 (Undocumented) SBML MML
ypg00633 Trinitrotoluene degradation SBML MML
ypg00640 Propanoate metabolism SBML MML
ypg00641 3-Chloroacrylic acid degradation SBML MML
ypg00642 Ethylbenzene degradation SBML MML
ypg00650 Butanoate metabolism SBML MML
ypg00660 C5-Branched dibasic acid metabolism SBML MML
ypg00670 One carbon pool by folate SBML MML
ypg00680 Methane metabolism SBML MML
ypg00710 (Undocumented) SBML MML
ypg00720 (Undocumented) SBML MML
ypg00730 Thiamine metabolism SBML MML
ypg00740 Riboflavin metabolism SBML MML
ypg00750 Vitamin B6 metabolism SBML MML
ypg00760 Nicotinate and nicotinamide metabolism SBML MML
ypg00770 Pantothenate and CoA biosynthesis SBML MML
ypg00780 Biotin metabolism SBML MML
ypg00785 Lipoic acid metabolism SBML MML
ypg00790 Folate biosynthesis SBML MML
ypg00791 Atrazine degradation SBML MML
ypg00860 Porphyrin and chlorophyll metabolism SBML MML
ypg00900 Terpenoid backbone biosynthesis SBML MML
ypg00903 (Undocumented) SBML MML
ypg00910 Nitrogen metabolism SBML MML
ypg00920 Sulfur metabolism SBML MML
ypg00930 Caprolactam degradation SBML MML
ypg00940 (Undocumented) SBML MML
ypg00950 (Undocumented) SBML MML
ypg00960 (Undocumented) SBML MML
ypg00970 Aminoacyl-tRNA biosynthesis SBML MML
ypg00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
ypg00982 (Undocumented) SBML MML
ypg00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.