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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ypa: Yersinia pestis Antiqua

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ypa00010 Glycolysis / Gluconeogenesis SBML MML
ypa00020 Citrate cycle (TCA cycle) SBML MML
ypa00030 Pentose phosphate pathway SBML MML
ypa00031 (Undocumented) SBML MML
ypa00040 Pentose and glucuronate interconversions SBML MML
ypa00051 Fructose and mannose metabolism SBML MML
ypa00052 Galactose metabolism SBML MML
ypa00053 Ascorbate and aldarate metabolism SBML MML
ypa00061 Fatty acid biosynthesis SBML MML
ypa00062 Fatty acid elongation in mitochondria SBML MML
ypa00071 Fatty acid metabolism SBML MML
ypa00100 (Undocumented) SBML MML
ypa00120 (Undocumented) SBML MML
ypa00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ypa00220 (Undocumented) SBML MML
ypa00230 Purine metabolism SBML MML
ypa00240 Pyrimidine metabolism SBML MML
ypa00251 (Undocumented) SBML MML
ypa00252 (Undocumented) SBML MML
ypa00260 Glycine, serine and threonine metabolism SBML MML
ypa00271 (Undocumented) SBML MML
ypa00272 (Undocumented) SBML MML
ypa00280 Valine, leucine and isoleucine degradation SBML MML
ypa00281 Geraniol degradation SBML MML
ypa00290 Valine, leucine and isoleucine biosynthesis SBML MML
ypa00300 Lysine biosynthesis SBML MML
ypa00310 Lysine degradation SBML MML
ypa00330 Arginine and proline metabolism SBML MML
ypa00340 Histidine metabolism SBML MML
ypa00350 Tyrosine metabolism SBML MML
ypa00360 Phenylalanine metabolism SBML MML
ypa00361 gamma-Hexachlorocyclohexane degradation SBML MML
ypa00362 (Undocumented) SBML MML
ypa00364 Fluorobenzoate degradation SBML MML
ypa00380 Tryptophan metabolism SBML MML
ypa00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ypa00401 Novobiocin biosynthesis SBML MML
ypa00410 beta-Alanine metabolism SBML MML
ypa00430 Taurine and hypotaurine metabolism SBML MML
ypa00450 Selenoamino acid metabolism SBML MML
ypa00460 (Undocumented) SBML MML
ypa00471 D-Glutamine and D-glutamate metabolism SBML MML
ypa00473 D-Alanine metabolism SBML MML
ypa00480 Glutathione metabolism SBML MML
ypa00500 Starch and sucrose metabolism SBML MML
ypa00520 Amino sugar and nucleotide sugar metabolism SBML MML
ypa00521 Streptomycin biosynthesis SBML MML
ypa00523 Polyketide sugar unit biosynthesis SBML MML
ypa00530 (Undocumented) SBML MML
ypa00540 Lipopolysaccharide biosynthesis SBML MML
ypa00550 Peptidoglycan biosynthesis SBML MML
ypa00561 Glycerolipid metabolism SBML MML
ypa00562 Inositol phosphate metabolism SBML MML
ypa00564 Glycerophospholipid metabolism SBML MML
ypa00565 Ether lipid metabolism SBML MML
ypa00590 Arachidonic acid metabolism SBML MML
ypa00591 Linoleic acid metabolism SBML MML
ypa00592 alpha-Linolenic acid metabolism SBML MML
ypa00600 Sphingolipid metabolism SBML MML
ypa00620 Pyruvate metabolism SBML MML
ypa00624 1- and 2-Methylnaphthalene degradation SBML MML
ypa00627 1,4-Dichlorobenzene degradation SBML MML
ypa00628 Fluorene degradation SBML MML
ypa00630 Glyoxylate and dicarboxylate metabolism SBML MML
ypa00632 (Undocumented) SBML MML
ypa00633 Trinitrotoluene degradation SBML MML
ypa00640 Propanoate metabolism SBML MML
ypa00641 3-Chloroacrylic acid degradation SBML MML
ypa00642 Ethylbenzene degradation SBML MML
ypa00650 Butanoate metabolism SBML MML
ypa00660 C5-Branched dibasic acid metabolism SBML MML
ypa00670 One carbon pool by folate SBML MML
ypa00680 Methane metabolism SBML MML
ypa00710 (Undocumented) SBML MML
ypa00720 (Undocumented) SBML MML
ypa00730 Thiamine metabolism SBML MML
ypa00740 Riboflavin metabolism SBML MML
ypa00750 Vitamin B6 metabolism SBML MML
ypa00760 Nicotinate and nicotinamide metabolism SBML MML
ypa00770 Pantothenate and CoA biosynthesis SBML MML
ypa00780 Biotin metabolism SBML MML
ypa00785 Lipoic acid metabolism SBML MML
ypa00790 Folate biosynthesis SBML MML
ypa00860 Porphyrin and chlorophyll metabolism SBML MML
ypa00900 Terpenoid backbone biosynthesis SBML MML
ypa00903 (Undocumented) SBML MML
ypa00910 Nitrogen metabolism SBML MML
ypa00920 Sulfur metabolism SBML MML
ypa00930 Caprolactam degradation SBML MML
ypa00940 (Undocumented) SBML MML
ypa00950 (Undocumented) SBML MML
ypa00960 (Undocumented) SBML MML
ypa00970 Aminoacyl-tRNA biosynthesis SBML MML
ypa00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
ypa00982 (Undocumented) SBML MML
ypa00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.