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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism yen: Yersinia enterocolitica

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
yen00010 Glycolysis / Gluconeogenesis SBML MML
yen00020 Citrate cycle (TCA cycle) SBML MML
yen00030 Pentose phosphate pathway SBML MML
yen00031 (Undocumented) SBML MML
yen00040 Pentose and glucuronate interconversions SBML MML
yen00051 Fructose and mannose metabolism SBML MML
yen00052 Galactose metabolism SBML MML
yen00053 Ascorbate and aldarate metabolism SBML MML
yen00061 Fatty acid biosynthesis SBML MML
yen00062 Fatty acid elongation in mitochondria SBML MML
yen00071 Fatty acid metabolism SBML MML
yen00100 (Undocumented) SBML MML
yen00120 (Undocumented) SBML MML
yen00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
yen00220 (Undocumented) SBML MML
yen00230 Purine metabolism SBML MML
yen00240 Pyrimidine metabolism SBML MML
yen00251 (Undocumented) SBML MML
yen00252 (Undocumented) SBML MML
yen00260 Glycine, serine and threonine metabolism SBML MML
yen00271 (Undocumented) SBML MML
yen00272 (Undocumented) SBML MML
yen00280 Valine, leucine and isoleucine degradation SBML MML
yen00281 Geraniol degradation SBML MML
yen00290 Valine, leucine and isoleucine biosynthesis SBML MML
yen00300 Lysine biosynthesis SBML MML
yen00310 Lysine degradation SBML MML
yen00330 Arginine and proline metabolism SBML MML
yen00340 Histidine metabolism SBML MML
yen00350 Tyrosine metabolism SBML MML
yen00360 Phenylalanine metabolism SBML MML
yen00361 gamma-Hexachlorocyclohexane degradation SBML MML
yen00362 (Undocumented) SBML MML
yen00364 Fluorobenzoate degradation SBML MML
yen00380 Tryptophan metabolism SBML MML
yen00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
yen00401 Novobiocin biosynthesis SBML MML
yen00410 beta-Alanine metabolism SBML MML
yen00430 Taurine and hypotaurine metabolism SBML MML
yen00450 Selenoamino acid metabolism SBML MML
yen00460 (Undocumented) SBML MML
yen00471 D-Glutamine and D-glutamate metabolism SBML MML
yen00473 D-Alanine metabolism SBML MML
yen00480 Glutathione metabolism SBML MML
yen00500 Starch and sucrose metabolism SBML MML
yen00520 Amino sugar and nucleotide sugar metabolism SBML MML
yen00521 Streptomycin biosynthesis SBML MML
yen00523 Polyketide sugar unit biosynthesis SBML MML
yen00530 (Undocumented) SBML MML
yen00540 Lipopolysaccharide biosynthesis SBML MML
yen00550 Peptidoglycan biosynthesis SBML MML
yen00561 Glycerolipid metabolism SBML MML
yen00562 Inositol phosphate metabolism SBML MML
yen00564 Glycerophospholipid metabolism SBML MML
yen00565 Ether lipid metabolism SBML MML
yen00590 Arachidonic acid metabolism SBML MML
yen00591 Linoleic acid metabolism SBML MML
yen00592 alpha-Linolenic acid metabolism SBML MML
yen00620 Pyruvate metabolism SBML MML
yen00624 1- and 2-Methylnaphthalene degradation SBML MML
yen00627 1,4-Dichlorobenzene degradation SBML MML
yen00630 Glyoxylate and dicarboxylate metabolism SBML MML
yen00632 (Undocumented) SBML MML
yen00633 Trinitrotoluene degradation SBML MML
yen00640 Propanoate metabolism SBML MML
yen00641 3-Chloroacrylic acid degradation SBML MML
yen00642 Ethylbenzene degradation SBML MML
yen00650 Butanoate metabolism SBML MML
yen00660 C5-Branched dibasic acid metabolism SBML MML
yen00670 One carbon pool by folate SBML MML
yen00680 Methane metabolism SBML MML
yen00710 (Undocumented) SBML MML
yen00720 (Undocumented) SBML MML
yen00730 Thiamine metabolism SBML MML
yen00740 Riboflavin metabolism SBML MML
yen00750 Vitamin B6 metabolism SBML MML
yen00760 Nicotinate and nicotinamide metabolism SBML MML
yen00770 Pantothenate and CoA biosynthesis SBML MML
yen00780 Biotin metabolism SBML MML
yen00785 Lipoic acid metabolism SBML MML
yen00790 Folate biosynthesis SBML MML
yen00860 Porphyrin and chlorophyll metabolism SBML MML
yen00900 Terpenoid backbone biosynthesis SBML MML
yen00903 (Undocumented) SBML MML
yen00910 Nitrogen metabolism SBML MML
yen00920 Sulfur metabolism SBML MML
yen00930 Caprolactam degradation SBML MML
yen00950 (Undocumented) SBML MML
yen00960 (Undocumented) SBML MML
yen00970 Aminoacyl-tRNA biosynthesis SBML MML
yen00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
yen00982 (Undocumented) SBML MML
yen00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.