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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism xtr: Xenopus tropicalis (western clawed frog)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
xtr00010 Glycolysis / Gluconeogenesis SBML MML
xtr00020 Citrate cycle (TCA cycle) SBML MML
xtr00030 Pentose phosphate pathway SBML MML
xtr00040 Pentose and glucuronate interconversions SBML MML
xtr00051 Fructose and mannose metabolism SBML MML
xtr00052 Galactose metabolism SBML MML
xtr00061 Fatty acid biosynthesis SBML MML
xtr00062 Fatty acid elongation in mitochondria SBML MML
xtr00071 Fatty acid metabolism SBML MML
xtr00072 Synthesis and degradation of ketone bodies SBML MML
xtr00100 (Undocumented) SBML MML
xtr00120 (Undocumented) SBML MML
xtr00150 Androgen and estrogen metabolism SBML MML
xtr00220 (Undocumented) SBML MML
xtr00230 Purine metabolism SBML MML
xtr00232 Caffeine metabolism SBML MML
xtr00240 Pyrimidine metabolism SBML MML
xtr00251 (Undocumented) SBML MML
xtr00252 (Undocumented) SBML MML
xtr00260 Glycine, serine and threonine metabolism SBML MML
xtr00271 (Undocumented) SBML MML
xtr00272 (Undocumented) SBML MML
xtr00280 Valine, leucine and isoleucine degradation SBML MML
xtr00281 Geraniol degradation SBML MML
xtr00290 Valine, leucine and isoleucine biosynthesis SBML MML
xtr00300 Lysine biosynthesis SBML MML
xtr00310 Lysine degradation SBML MML
xtr00330 Arginine and proline metabolism SBML MML
xtr00340 Histidine metabolism SBML MML
xtr00350 Tyrosine metabolism SBML MML
xtr00360 Phenylalanine metabolism SBML MML
xtr00361 gamma-Hexachlorocyclohexane degradation SBML MML
xtr00380 Tryptophan metabolism SBML MML
xtr00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
xtr00401 Novobiocin biosynthesis SBML MML
xtr00410 beta-Alanine metabolism SBML MML
xtr00430 Taurine and hypotaurine metabolism SBML MML
xtr00440 Phosphonate and phosphinate metabolism SBML MML
xtr00450 Selenoamino acid metabolism SBML MML
xtr00460 (Undocumented) SBML MML
xtr00480 Glutathione metabolism SBML MML
xtr00500 Starch and sucrose metabolism SBML MML
xtr00510 (Undocumented) SBML MML
xtr00520 Amino sugar and nucleotide sugar metabolism SBML MML
xtr00530 (Undocumented) SBML MML
xtr00550 Peptidoglycan biosynthesis SBML MML
xtr00561 Glycerolipid metabolism SBML MML
xtr00562 Inositol phosphate metabolism SBML MML
xtr00564 Glycerophospholipid metabolism SBML MML
xtr00565 Ether lipid metabolism SBML MML
xtr00590 Arachidonic acid metabolism SBML MML
xtr00591 Linoleic acid metabolism SBML MML
xtr00592 alpha-Linolenic acid metabolism SBML MML
xtr00600 Sphingolipid metabolism SBML MML
xtr00620 Pyruvate metabolism SBML MML
xtr00624 1- and 2-Methylnaphthalene degradation SBML MML
xtr00625 (Undocumented) SBML MML
xtr00630 Glyoxylate and dicarboxylate metabolism SBML MML
xtr00632 (Undocumented) SBML MML
xtr00640 Propanoate metabolism SBML MML
xtr00641 3-Chloroacrylic acid degradation SBML MML
xtr00650 Butanoate metabolism SBML MML
xtr00670 One carbon pool by folate SBML MML
xtr00680 Methane metabolism SBML MML
xtr00710 (Undocumented) SBML MML
xtr00720 (Undocumented) SBML MML
xtr00740 Riboflavin metabolism SBML MML
xtr00760 Nicotinate and nicotinamide metabolism SBML MML
xtr00785 Lipoic acid metabolism SBML MML
xtr00790 Folate biosynthesis SBML MML
xtr00791 Atrazine degradation SBML MML
xtr00830 Retinol metabolism SBML MML
xtr00860 Porphyrin and chlorophyll metabolism SBML MML
xtr00903 (Undocumented) SBML MML
xtr00910 Nitrogen metabolism SBML MML
xtr00920 Sulfur metabolism SBML MML
xtr00930 Caprolactam degradation SBML MML
xtr00950 (Undocumented) SBML MML
xtr00960 (Undocumented) SBML MML
xtr00970 Aminoacyl-tRNA biosynthesis SBML MML
xtr00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
xtr00982 (Undocumented) SBML MML
xtr00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.