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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism xoo: Xanthomonas oryzae KACC10331

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
xoo00010 Glycolysis / Gluconeogenesis SBML MML
xoo00020 Citrate cycle (TCA cycle) SBML MML
xoo00030 Pentose phosphate pathway SBML MML
xoo00031 (Undocumented) SBML MML
xoo00040 Pentose and glucuronate interconversions SBML MML
xoo00051 Fructose and mannose metabolism SBML MML
xoo00052 Galactose metabolism SBML MML
xoo00053 Ascorbate and aldarate metabolism SBML MML
xoo00061 Fatty acid biosynthesis SBML MML
xoo00062 Fatty acid elongation in mitochondria SBML MML
xoo00071 Fatty acid metabolism SBML MML
xoo00072 Synthesis and degradation of ketone bodies SBML MML
xoo00100 (Undocumented) SBML MML
xoo00120 (Undocumented) SBML MML
xoo00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
xoo00220 (Undocumented) SBML MML
xoo00230 Purine metabolism SBML MML
xoo00240 Pyrimidine metabolism SBML MML
xoo00251 (Undocumented) SBML MML
xoo00252 (Undocumented) SBML MML
xoo00260 Glycine, serine and threonine metabolism SBML MML
xoo00271 (Undocumented) SBML MML
xoo00272 (Undocumented) SBML MML
xoo00280 Valine, leucine and isoleucine degradation SBML MML
xoo00281 Geraniol degradation SBML MML
xoo00290 Valine, leucine and isoleucine biosynthesis SBML MML
xoo00300 Lysine biosynthesis SBML MML
xoo00310 Lysine degradation SBML MML
xoo00311 Penicillin and cephalosporin biosynthesis SBML MML
xoo00330 Arginine and proline metabolism SBML MML
xoo00340 Histidine metabolism SBML MML
xoo00350 Tyrosine metabolism SBML MML
xoo00360 Phenylalanine metabolism SBML MML
xoo00361 gamma-Hexachlorocyclohexane degradation SBML MML
xoo00362 (Undocumented) SBML MML
xoo00364 Fluorobenzoate degradation SBML MML
xoo00380 Tryptophan metabolism SBML MML
xoo00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
xoo00401 Novobiocin biosynthesis SBML MML
xoo00410 beta-Alanine metabolism SBML MML
xoo00430 Taurine and hypotaurine metabolism SBML MML
xoo00440 Phosphonate and phosphinate metabolism SBML MML
xoo00450 Selenoamino acid metabolism SBML MML
xoo00460 (Undocumented) SBML MML
xoo00471 D-Glutamine and D-glutamate metabolism SBML MML
xoo00473 D-Alanine metabolism SBML MML
xoo00480 Glutathione metabolism SBML MML
xoo00500 Starch and sucrose metabolism SBML MML
xoo00510 (Undocumented) SBML MML
xoo00520 Amino sugar and nucleotide sugar metabolism SBML MML
xoo00521 Streptomycin biosynthesis SBML MML
xoo00523 Polyketide sugar unit biosynthesis SBML MML
xoo00530 (Undocumented) SBML MML
xoo00540 Lipopolysaccharide biosynthesis SBML MML
xoo00550 Peptidoglycan biosynthesis SBML MML
xoo00561 Glycerolipid metabolism SBML MML
xoo00562 Inositol phosphate metabolism SBML MML
xoo00564 Glycerophospholipid metabolism SBML MML
xoo00565 Ether lipid metabolism SBML MML
xoo00590 Arachidonic acid metabolism SBML MML
xoo00591 Linoleic acid metabolism SBML MML
xoo00592 alpha-Linolenic acid metabolism SBML MML
xoo00620 Pyruvate metabolism SBML MML
xoo00622 Toluene and xylene degradation SBML MML
xoo00623 2,4-Dichlorobenzoate degradation SBML MML
xoo00624 1- and 2-Methylnaphthalene degradation SBML MML
xoo00626 Naphthalene and anthracene degradation SBML MML
xoo00627 1,4-Dichlorobenzene degradation SBML MML
xoo00630 Glyoxylate and dicarboxylate metabolism SBML MML
xoo00631 1,2-Dichloroethane degradation SBML MML
xoo00632 (Undocumented) SBML MML
xoo00640 Propanoate metabolism SBML MML
xoo00641 3-Chloroacrylic acid degradation SBML MML
xoo00643 Styrene degradation SBML MML
xoo00650 Butanoate metabolism SBML MML
xoo00660 C5-Branched dibasic acid metabolism SBML MML
xoo00670 One carbon pool by folate SBML MML
xoo00680 Methane metabolism SBML MML
xoo00710 (Undocumented) SBML MML
xoo00720 (Undocumented) SBML MML
xoo00730 Thiamine metabolism SBML MML
xoo00740 Riboflavin metabolism SBML MML
xoo00750 Vitamin B6 metabolism SBML MML
xoo00760 Nicotinate and nicotinamide metabolism SBML MML
xoo00770 Pantothenate and CoA biosynthesis SBML MML
xoo00780 Biotin metabolism SBML MML
xoo00785 Lipoic acid metabolism SBML MML
xoo00790 Folate biosynthesis SBML MML
xoo00860 Porphyrin and chlorophyll metabolism SBML MML
xoo00900 Terpenoid backbone biosynthesis SBML MML
xoo00903 (Undocumented) SBML MML
xoo00910 Nitrogen metabolism SBML MML
xoo00920 Sulfur metabolism SBML MML
xoo00930 Caprolactam degradation SBML MML
xoo00940 (Undocumented) SBML MML
xoo00950 (Undocumented) SBML MML
xoo00970 Aminoacyl-tRNA biosynthesis SBML MML
xoo00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
xoo00982 (Undocumented) SBML MML
xoo00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.