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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism xom: Xanthomonas oryzae MAFF311018

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
xom00010 Glycolysis / Gluconeogenesis SBML MML
xom00020 Citrate cycle (TCA cycle) SBML MML
xom00030 Pentose phosphate pathway SBML MML
xom00031 (Undocumented) SBML MML
xom00040 Pentose and glucuronate interconversions SBML MML
xom00051 Fructose and mannose metabolism SBML MML
xom00052 Galactose metabolism SBML MML
xom00053 Ascorbate and aldarate metabolism SBML MML
xom00061 Fatty acid biosynthesis SBML MML
xom00062 Fatty acid elongation in mitochondria SBML MML
xom00071 Fatty acid metabolism SBML MML
xom00072 Synthesis and degradation of ketone bodies SBML MML
xom00100 (Undocumented) SBML MML
xom00120 (Undocumented) SBML MML
xom00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
xom00220 (Undocumented) SBML MML
xom00230 Purine metabolism SBML MML
xom00240 Pyrimidine metabolism SBML MML
xom00251 (Undocumented) SBML MML
xom00252 (Undocumented) SBML MML
xom00260 Glycine, serine and threonine metabolism SBML MML
xom00271 (Undocumented) SBML MML
xom00272 (Undocumented) SBML MML
xom00280 Valine, leucine and isoleucine degradation SBML MML
xom00281 Geraniol degradation SBML MML
xom00290 Valine, leucine and isoleucine biosynthesis SBML MML
xom00300 Lysine biosynthesis SBML MML
xom00310 Lysine degradation SBML MML
xom00311 Penicillin and cephalosporin biosynthesis SBML MML
xom00330 Arginine and proline metabolism SBML MML
xom00340 Histidine metabolism SBML MML
xom00350 Tyrosine metabolism SBML MML
xom00360 Phenylalanine metabolism SBML MML
xom00361 gamma-Hexachlorocyclohexane degradation SBML MML
xom00362 (Undocumented) SBML MML
xom00364 Fluorobenzoate degradation SBML MML
xom00380 Tryptophan metabolism SBML MML
xom00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
xom00401 Novobiocin biosynthesis SBML MML
xom00410 beta-Alanine metabolism SBML MML
xom00430 Taurine and hypotaurine metabolism SBML MML
xom00440 Phosphonate and phosphinate metabolism SBML MML
xom00450 Selenoamino acid metabolism SBML MML
xom00460 (Undocumented) SBML MML
xom00471 D-Glutamine and D-glutamate metabolism SBML MML
xom00473 D-Alanine metabolism SBML MML
xom00480 Glutathione metabolism SBML MML
xom00500 Starch and sucrose metabolism SBML MML
xom00510 (Undocumented) SBML MML
xom00520 Amino sugar and nucleotide sugar metabolism SBML MML
xom00521 Streptomycin biosynthesis SBML MML
xom00523 Polyketide sugar unit biosynthesis SBML MML
xom00530 (Undocumented) SBML MML
xom00540 Lipopolysaccharide biosynthesis SBML MML
xom00550 Peptidoglycan biosynthesis SBML MML
xom00561 Glycerolipid metabolism SBML MML
xom00562 Inositol phosphate metabolism SBML MML
xom00564 Glycerophospholipid metabolism SBML MML
xom00565 Ether lipid metabolism SBML MML
xom00590 Arachidonic acid metabolism SBML MML
xom00591 Linoleic acid metabolism SBML MML
xom00592 alpha-Linolenic acid metabolism SBML MML
xom00620 Pyruvate metabolism SBML MML
xom00622 Toluene and xylene degradation SBML MML
xom00623 2,4-Dichlorobenzoate degradation SBML MML
xom00624 1- and 2-Methylnaphthalene degradation SBML MML
xom00626 Naphthalene and anthracene degradation SBML MML
xom00627 1,4-Dichlorobenzene degradation SBML MML
xom00630 Glyoxylate and dicarboxylate metabolism SBML MML
xom00631 1,2-Dichloroethane degradation SBML MML
xom00632 (Undocumented) SBML MML
xom00640 Propanoate metabolism SBML MML
xom00641 3-Chloroacrylic acid degradation SBML MML
xom00643 Styrene degradation SBML MML
xom00650 Butanoate metabolism SBML MML
xom00660 C5-Branched dibasic acid metabolism SBML MML
xom00670 One carbon pool by folate SBML MML
xom00680 Methane metabolism SBML MML
xom00710 (Undocumented) SBML MML
xom00720 (Undocumented) SBML MML
xom00730 Thiamine metabolism SBML MML
xom00740 Riboflavin metabolism SBML MML
xom00750 Vitamin B6 metabolism SBML MML
xom00760 Nicotinate and nicotinamide metabolism SBML MML
xom00770 Pantothenate and CoA biosynthesis SBML MML
xom00780 Biotin metabolism SBML MML
xom00785 Lipoic acid metabolism SBML MML
xom00790 Folate biosynthesis SBML MML
xom00860 Porphyrin and chlorophyll metabolism SBML MML
xom00900 Terpenoid backbone biosynthesis SBML MML
xom00903 (Undocumented) SBML MML
xom00910 Nitrogen metabolism SBML MML
xom00920 Sulfur metabolism SBML MML
xom00930 Caprolactam degradation SBML MML
xom00940 (Undocumented) SBML MML
xom00950 (Undocumented) SBML MML
xom00960 (Undocumented) SBML MML
xom00970 Aminoacyl-tRNA biosynthesis SBML MML
xom00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
xom00982 (Undocumented) SBML MML
xom00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.