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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism xla: Xenopus laevis (African clawed frog)

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
xla00010 Glycolysis / Gluconeogenesis SBML MML
xla00020 Citrate cycle (TCA cycle) SBML MML
xla00030 Pentose phosphate pathway SBML MML
xla00040 Pentose and glucuronate interconversions SBML MML
xla00051 Fructose and mannose metabolism SBML MML
xla00052 Galactose metabolism SBML MML
xla00053 Ascorbate and aldarate metabolism SBML MML
xla00061 Fatty acid biosynthesis SBML MML
xla00062 Fatty acid elongation in mitochondria SBML MML
xla00071 Fatty acid metabolism SBML MML
xla00072 Synthesis and degradation of ketone bodies SBML MML
xla00100 (Undocumented) SBML MML
xla00120 (Undocumented) SBML MML
xla00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
xla00140 (Undocumented) SBML MML
xla00150 Androgen and estrogen metabolism SBML MML
xla00220 (Undocumented) SBML MML
xla00230 Purine metabolism SBML MML
xla00232 Caffeine metabolism SBML MML
xla00240 Pyrimidine metabolism SBML MML
xla00251 (Undocumented) SBML MML
xla00252 (Undocumented) SBML MML
xla00260 Glycine, serine and threonine metabolism SBML MML
xla00271 (Undocumented) SBML MML
xla00272 (Undocumented) SBML MML
xla00280 Valine, leucine and isoleucine degradation SBML MML
xla00281 Geraniol degradation SBML MML
xla00290 Valine, leucine and isoleucine biosynthesis SBML MML
xla00300 Lysine biosynthesis SBML MML
xla00310 Lysine degradation SBML MML
xla00330 Arginine and proline metabolism SBML MML
xla00340 Histidine metabolism SBML MML
xla00350 Tyrosine metabolism SBML MML
xla00360 Phenylalanine metabolism SBML MML
xla00361 gamma-Hexachlorocyclohexane degradation SBML MML
xla00363 Bisphenol A degradation SBML MML
xla00380 Tryptophan metabolism SBML MML
xla00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
xla00410 beta-Alanine metabolism SBML MML
xla00430 Taurine and hypotaurine metabolism SBML MML
xla00440 Phosphonate and phosphinate metabolism SBML MML
xla00450 Selenoamino acid metabolism SBML MML
xla00460 (Undocumented) SBML MML
xla00480 Glutathione metabolism SBML MML
xla00500 Starch and sucrose metabolism SBML MML
xla00510 (Undocumented) SBML MML
xla00520 Amino sugar and nucleotide sugar metabolism SBML MML
xla00521 Streptomycin biosynthesis SBML MML
xla00530 (Undocumented) SBML MML
xla00550 Peptidoglycan biosynthesis SBML MML
xla00561 Glycerolipid metabolism SBML MML
xla00562 Inositol phosphate metabolism SBML MML
xla00564 Glycerophospholipid metabolism SBML MML
xla00565 Ether lipid metabolism SBML MML
xla00590 Arachidonic acid metabolism SBML MML
xla00591 Linoleic acid metabolism SBML MML
xla00592 alpha-Linolenic acid metabolism SBML MML
xla00600 Sphingolipid metabolism SBML MML
xla00620 Pyruvate metabolism SBML MML
xla00624 1- and 2-Methylnaphthalene degradation SBML MML
xla00625 (Undocumented) SBML MML
xla00626 Naphthalene and anthracene degradation SBML MML
xla00630 Glyoxylate and dicarboxylate metabolism SBML MML
xla00632 (Undocumented) SBML MML
xla00640 Propanoate metabolism SBML MML
xla00641 3-Chloroacrylic acid degradation SBML MML
xla00643 Styrene degradation SBML MML
xla00650 Butanoate metabolism SBML MML
xla00670 One carbon pool by folate SBML MML
xla00680 Methane metabolism SBML MML
xla00710 (Undocumented) SBML MML
xla00720 (Undocumented) SBML MML
xla00740 Riboflavin metabolism SBML MML
xla00750 Vitamin B6 metabolism SBML MML
xla00760 Nicotinate and nicotinamide metabolism SBML MML
xla00770 Pantothenate and CoA biosynthesis SBML MML
xla00785 Lipoic acid metabolism SBML MML
xla00790 Folate biosynthesis SBML MML
xla00791 Atrazine degradation SBML MML
xla00830 Retinol metabolism SBML MML
xla00860 Porphyrin and chlorophyll metabolism SBML MML
xla00900 Terpenoid backbone biosynthesis SBML MML
xla00903 (Undocumented) SBML MML
xla00910 Nitrogen metabolism SBML MML
xla00920 Sulfur metabolism SBML MML
xla00930 Caprolactam degradation SBML MML
xla00960 (Undocumented) SBML MML
xla00970 Aminoacyl-tRNA biosynthesis SBML MML
xla00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
xla00982 (Undocumented) SBML MML
xla00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.