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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism xfm: Xylella fastidiosa M12

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
xfm00010 Glycolysis / Gluconeogenesis SBML MML
xfm00020 Citrate cycle (TCA cycle) SBML MML
xfm00030 Pentose phosphate pathway SBML MML
xfm00040 Pentose and glucuronate interconversions SBML MML
xfm00051 Fructose and mannose metabolism SBML MML
xfm00052 Galactose metabolism SBML MML
xfm00053 Ascorbate and aldarate metabolism SBML MML
xfm00061 Fatty acid biosynthesis SBML MML
xfm00071 Fatty acid metabolism SBML MML
xfm00100 (Undocumented) SBML MML
xfm00120 (Undocumented) SBML MML
xfm00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
xfm00140 (Undocumented) SBML MML
xfm00150 Androgen and estrogen metabolism SBML MML
xfm00220 (Undocumented) SBML MML
xfm00230 Purine metabolism SBML MML
xfm00240 Pyrimidine metabolism SBML MML
xfm00251 (Undocumented) SBML MML
xfm00252 (Undocumented) SBML MML
xfm00260 Glycine, serine and threonine metabolism SBML MML
xfm00271 (Undocumented) SBML MML
xfm00272 (Undocumented) SBML MML
xfm00280 Valine, leucine and isoleucine degradation SBML MML
xfm00290 Valine, leucine and isoleucine biosynthesis SBML MML
xfm00300 Lysine biosynthesis SBML MML
xfm00310 Lysine degradation SBML MML
xfm00330 Arginine and proline metabolism SBML MML
xfm00340 Histidine metabolism SBML MML
xfm00350 Tyrosine metabolism SBML MML
xfm00360 Phenylalanine metabolism SBML MML
xfm00361 gamma-Hexachlorocyclohexane degradation SBML MML
xfm00363 Bisphenol A degradation SBML MML
xfm00380 Tryptophan metabolism SBML MML
xfm00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
xfm00401 Novobiocin biosynthesis SBML MML
xfm00410 beta-Alanine metabolism SBML MML
xfm00450 Selenoamino acid metabolism SBML MML
xfm00460 (Undocumented) SBML MML
xfm00471 D-Glutamine and D-glutamate metabolism SBML MML
xfm00473 D-Alanine metabolism SBML MML
xfm00480 Glutathione metabolism SBML MML
xfm00500 Starch and sucrose metabolism SBML MML
xfm00520 Amino sugar and nucleotide sugar metabolism SBML MML
xfm00521 Streptomycin biosynthesis SBML MML
xfm00523 Polyketide sugar unit biosynthesis SBML MML
xfm00530 (Undocumented) SBML MML
xfm00540 Lipopolysaccharide biosynthesis SBML MML
xfm00550 Peptidoglycan biosynthesis SBML MML
xfm00561 Glycerolipid metabolism SBML MML
xfm00562 Inositol phosphate metabolism SBML MML
xfm00564 Glycerophospholipid metabolism SBML MML
xfm00590 Arachidonic acid metabolism SBML MML
xfm00620 Pyruvate metabolism SBML MML
xfm00624 1- and 2-Methylnaphthalene degradation SBML MML
xfm00626 Naphthalene and anthracene degradation SBML MML
xfm00630 Glyoxylate and dicarboxylate metabolism SBML MML
xfm00632 (Undocumented) SBML MML
xfm00640 Propanoate metabolism SBML MML
xfm00641 3-Chloroacrylic acid degradation SBML MML
xfm00650 Butanoate metabolism SBML MML
xfm00660 C5-Branched dibasic acid metabolism SBML MML
xfm00670 One carbon pool by folate SBML MML
xfm00680 Methane metabolism SBML MML
xfm00710 (Undocumented) SBML MML
xfm00720 (Undocumented) SBML MML
xfm00730 Thiamine metabolism SBML MML
xfm00740 Riboflavin metabolism SBML MML
xfm00750 Vitamin B6 metabolism SBML MML
xfm00760 Nicotinate and nicotinamide metabolism SBML MML
xfm00770 Pantothenate and CoA biosynthesis SBML MML
xfm00780 Biotin metabolism SBML MML
xfm00790 Folate biosynthesis SBML MML
xfm00791 Atrazine degradation SBML MML
xfm00860 Porphyrin and chlorophyll metabolism SBML MML
xfm00900 Terpenoid backbone biosynthesis SBML MML
xfm00903 (Undocumented) SBML MML
xfm00910 Nitrogen metabolism SBML MML
xfm00920 Sulfur metabolism SBML MML
xfm00930 Caprolactam degradation SBML MML
xfm00940 (Undocumented) SBML MML
xfm00950 (Undocumented) SBML MML
xfm00960 (Undocumented) SBML MML
xfm00970 Aminoacyl-tRNA biosynthesis SBML MML
xfm00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
xfm00982 (Undocumented) SBML MML
xfm00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.