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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism xcb: Xanthomonas campestris pv. campestris 8004

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
xcb00010 Glycolysis / Gluconeogenesis SBML MML
xcb00020 Citrate cycle (TCA cycle) SBML MML
xcb00030 Pentose phosphate pathway SBML MML
xcb00031 (Undocumented) SBML MML
xcb00040 Pentose and glucuronate interconversions SBML MML
xcb00051 Fructose and mannose metabolism SBML MML
xcb00052 Galactose metabolism SBML MML
xcb00053 Ascorbate and aldarate metabolism SBML MML
xcb00061 Fatty acid biosynthesis SBML MML
xcb00062 Fatty acid elongation in mitochondria SBML MML
xcb00071 Fatty acid metabolism SBML MML
xcb00072 Synthesis and degradation of ketone bodies SBML MML
xcb00100 (Undocumented) SBML MML
xcb00120 (Undocumented) SBML MML
xcb00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
xcb00140 (Undocumented) SBML MML
xcb00150 Androgen and estrogen metabolism SBML MML
xcb00220 (Undocumented) SBML MML
xcb00230 Purine metabolism SBML MML
xcb00240 Pyrimidine metabolism SBML MML
xcb00251 (Undocumented) SBML MML
xcb00252 (Undocumented) SBML MML
xcb00260 Glycine, serine and threonine metabolism SBML MML
xcb00271 (Undocumented) SBML MML
xcb00272 (Undocumented) SBML MML
xcb00280 Valine, leucine and isoleucine degradation SBML MML
xcb00281 Geraniol degradation SBML MML
xcb00290 Valine, leucine and isoleucine biosynthesis SBML MML
xcb00300 Lysine biosynthesis SBML MML
xcb00310 Lysine degradation SBML MML
xcb00311 Penicillin and cephalosporin biosynthesis SBML MML
xcb00330 Arginine and proline metabolism SBML MML
xcb00340 Histidine metabolism SBML MML
xcb00350 Tyrosine metabolism SBML MML
xcb00360 Phenylalanine metabolism SBML MML
xcb00361 gamma-Hexachlorocyclohexane degradation SBML MML
xcb00362 (Undocumented) SBML MML
xcb00364 Fluorobenzoate degradation SBML MML
xcb00380 Tryptophan metabolism SBML MML
xcb00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
xcb00401 Novobiocin biosynthesis SBML MML
xcb00410 beta-Alanine metabolism SBML MML
xcb00430 Taurine and hypotaurine metabolism SBML MML
xcb00440 Phosphonate and phosphinate metabolism SBML MML
xcb00450 Selenoamino acid metabolism SBML MML
xcb00460 (Undocumented) SBML MML
xcb00471 D-Glutamine and D-glutamate metabolism SBML MML
xcb00473 D-Alanine metabolism SBML MML
xcb00480 Glutathione metabolism SBML MML
xcb00500 Starch and sucrose metabolism SBML MML
xcb00520 Amino sugar and nucleotide sugar metabolism SBML MML
xcb00521 Streptomycin biosynthesis SBML MML
xcb00523 Polyketide sugar unit biosynthesis SBML MML
xcb00530 (Undocumented) SBML MML
xcb00540 Lipopolysaccharide biosynthesis SBML MML
xcb00550 Peptidoglycan biosynthesis SBML MML
xcb00561 Glycerolipid metabolism SBML MML
xcb00562 Inositol phosphate metabolism SBML MML
xcb00564 Glycerophospholipid metabolism SBML MML
xcb00565 Ether lipid metabolism SBML MML
xcb00590 Arachidonic acid metabolism SBML MML
xcb00591 Linoleic acid metabolism SBML MML
xcb00592 alpha-Linolenic acid metabolism SBML MML
xcb00600 Sphingolipid metabolism SBML MML
xcb00620 Pyruvate metabolism SBML MML
xcb00622 Toluene and xylene degradation SBML MML
xcb00623 2,4-Dichlorobenzoate degradation SBML MML
xcb00624 1- and 2-Methylnaphthalene degradation SBML MML
xcb00626 Naphthalene and anthracene degradation SBML MML
xcb00627 1,4-Dichlorobenzene degradation SBML MML
xcb00628 Fluorene degradation SBML MML
xcb00630 Glyoxylate and dicarboxylate metabolism SBML MML
xcb00631 1,2-Dichloroethane degradation SBML MML
xcb00632 (Undocumented) SBML MML
xcb00640 Propanoate metabolism SBML MML
xcb00641 3-Chloroacrylic acid degradation SBML MML
xcb00642 Ethylbenzene degradation SBML MML
xcb00643 Styrene degradation SBML MML
xcb00650 Butanoate metabolism SBML MML
xcb00660 C5-Branched dibasic acid metabolism SBML MML
xcb00670 One carbon pool by folate SBML MML
xcb00680 Methane metabolism SBML MML
xcb00710 (Undocumented) SBML MML
xcb00720 (Undocumented) SBML MML
xcb00730 Thiamine metabolism SBML MML
xcb00740 Riboflavin metabolism SBML MML
xcb00750 Vitamin B6 metabolism SBML MML
xcb00760 Nicotinate and nicotinamide metabolism SBML MML
xcb00770 Pantothenate and CoA biosynthesis SBML MML
xcb00780 Biotin metabolism SBML MML
xcb00785 Lipoic acid metabolism SBML MML
xcb00790 Folate biosynthesis SBML MML
xcb00860 Porphyrin and chlorophyll metabolism SBML MML
xcb00900 Terpenoid backbone biosynthesis SBML MML
xcb00903 (Undocumented) SBML MML
xcb00910 Nitrogen metabolism SBML MML
xcb00920 Sulfur metabolism SBML MML
xcb00930 Caprolactam degradation SBML MML
xcb00940 (Undocumented) SBML MML
xcb00950 (Undocumented) SBML MML
xcb00960 (Undocumented) SBML MML
xcb00970 Aminoacyl-tRNA biosynthesis SBML MML
xcb00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
xcb00982 (Undocumented) SBML MML
xcb00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.