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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism wbm: Wolbachia wBm

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
wbm00010 Glycolysis / Gluconeogenesis SBML MML
wbm00020 Citrate cycle (TCA cycle) SBML MML
wbm00030 Pentose phosphate pathway SBML MML
wbm00051 Fructose and mannose metabolism SBML MML
wbm00061 Fatty acid biosynthesis SBML MML
wbm00100 (Undocumented) SBML MML
wbm00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
wbm00220 (Undocumented) SBML MML
wbm00230 Purine metabolism SBML MML
wbm00240 Pyrimidine metabolism SBML MML
wbm00251 (Undocumented) SBML MML
wbm00252 (Undocumented) SBML MML
wbm00260 Glycine, serine and threonine metabolism SBML MML
wbm00271 (Undocumented) SBML MML
wbm00272 (Undocumented) SBML MML
wbm00280 Valine, leucine and isoleucine degradation SBML MML
wbm00290 Valine, leucine and isoleucine biosynthesis SBML MML
wbm00300 Lysine biosynthesis SBML MML
wbm00310 Lysine degradation SBML MML
wbm00330 Arginine and proline metabolism SBML MML
wbm00340 Histidine metabolism SBML MML
wbm00350 Tyrosine metabolism SBML MML
wbm00362 (Undocumented) SBML MML
wbm00380 Tryptophan metabolism SBML MML
wbm00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
wbm00450 Selenoamino acid metabolism SBML MML
wbm00471 D-Glutamine and D-glutamate metabolism SBML MML
wbm00480 Glutathione metabolism SBML MML
wbm00530 (Undocumented) SBML MML
wbm00550 Peptidoglycan biosynthesis SBML MML
wbm00562 Inositol phosphate metabolism SBML MML
wbm00564 Glycerophospholipid metabolism SBML MML
wbm00620 Pyruvate metabolism SBML MML
wbm00630 Glyoxylate and dicarboxylate metabolism SBML MML
wbm00640 Propanoate metabolism SBML MML
wbm00650 Butanoate metabolism SBML MML
wbm00670 One carbon pool by folate SBML MML
wbm00710 (Undocumented) SBML MML
wbm00720 (Undocumented) SBML MML
wbm00740 Riboflavin metabolism SBML MML
wbm00760 Nicotinate and nicotinamide metabolism SBML MML
wbm00770 Pantothenate and CoA biosynthesis SBML MML
wbm00780 Biotin metabolism SBML MML
wbm00785 Lipoic acid metabolism SBML MML
wbm00860 Porphyrin and chlorophyll metabolism SBML MML
wbm00900 Terpenoid backbone biosynthesis SBML MML
wbm00910 Nitrogen metabolism SBML MML
wbm00970 Aminoacyl-tRNA biosynthesis SBML MML
wbm00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
wbm00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.