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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism vok: Candidatus Vesicomyosocius okutanii

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
vok00010 Glycolysis / Gluconeogenesis SBML MML
vok00020 Citrate cycle (TCA cycle) SBML MML
vok00030 Pentose phosphate pathway SBML MML
vok00040 Pentose and glucuronate interconversions SBML MML
vok00051 Fructose and mannose metabolism SBML MML
vok00052 Galactose metabolism SBML MML
vok00061 Fatty acid biosynthesis SBML MML
vok00100 (Undocumented) SBML MML
vok00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
vok00220 (Undocumented) SBML MML
vok00230 Purine metabolism SBML MML
vok00240 Pyrimidine metabolism SBML MML
vok00251 (Undocumented) SBML MML
vok00252 (Undocumented) SBML MML
vok00260 Glycine, serine and threonine metabolism SBML MML
vok00271 (Undocumented) SBML MML
vok00272 (Undocumented) SBML MML
vok00280 Valine, leucine and isoleucine degradation SBML MML
vok00290 Valine, leucine and isoleucine biosynthesis SBML MML
vok00300 Lysine biosynthesis SBML MML
vok00310 Lysine degradation SBML MML
vok00330 Arginine and proline metabolism SBML MML
vok00340 Histidine metabolism SBML MML
vok00350 Tyrosine metabolism SBML MML
vok00360 Phenylalanine metabolism SBML MML
vok00380 Tryptophan metabolism SBML MML
vok00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
vok00401 Novobiocin biosynthesis SBML MML
vok00410 beta-Alanine metabolism SBML MML
vok00450 Selenoamino acid metabolism SBML MML
vok00471 D-Glutamine and D-glutamate metabolism SBML MML
vok00472 D-Arginine and D-ornithine metabolism SBML MML
vok00473 D-Alanine metabolism SBML MML
vok00480 Glutathione metabolism SBML MML
vok00500 Starch and sucrose metabolism SBML MML
vok00530 (Undocumented) SBML MML
vok00540 Lipopolysaccharide biosynthesis SBML MML
vok00550 Peptidoglycan biosynthesis SBML MML
vok00562 Inositol phosphate metabolism SBML MML
vok00564 Glycerophospholipid metabolism SBML MML
vok00620 Pyruvate metabolism SBML MML
vok00630 Glyoxylate and dicarboxylate metabolism SBML MML
vok00632 (Undocumented) SBML MML
vok00640 Propanoate metabolism SBML MML
vok00650 Butanoate metabolism SBML MML
vok00660 C5-Branched dibasic acid metabolism SBML MML
vok00670 One carbon pool by folate SBML MML
vok00680 Methane metabolism SBML MML
vok00710 (Undocumented) SBML MML
vok00720 (Undocumented) SBML MML
vok00730 Thiamine metabolism SBML MML
vok00740 Riboflavin metabolism SBML MML
vok00750 Vitamin B6 metabolism SBML MML
vok00760 Nicotinate and nicotinamide metabolism SBML MML
vok00770 Pantothenate and CoA biosynthesis SBML MML
vok00780 Biotin metabolism SBML MML
vok00785 Lipoic acid metabolism SBML MML
vok00790 Folate biosynthesis SBML MML
vok00791 Atrazine degradation SBML MML
vok00860 Porphyrin and chlorophyll metabolism SBML MML
vok00900 Terpenoid backbone biosynthesis SBML MML
vok00910 Nitrogen metabolism SBML MML
vok00920 Sulfur metabolism SBML MML
vok00940 (Undocumented) SBML MML
vok00950 (Undocumented) SBML MML
vok00970 Aminoacyl-tRNA biosynthesis SBML MML
vok00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
vok00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.