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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism vfi: Vibrio fischeri

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
vfi00010 Glycolysis / Gluconeogenesis SBML MML
vfi00020 Citrate cycle (TCA cycle) SBML MML
vfi00030 Pentose phosphate pathway SBML MML
vfi00040 Pentose and glucuronate interconversions SBML MML
vfi00051 Fructose and mannose metabolism SBML MML
vfi00052 Galactose metabolism SBML MML
vfi00053 Ascorbate and aldarate metabolism SBML MML
vfi00061 Fatty acid biosynthesis SBML MML
vfi00062 Fatty acid elongation in mitochondria SBML MML
vfi00071 Fatty acid metabolism SBML MML
vfi00100 (Undocumented) SBML MML
vfi00120 (Undocumented) SBML MML
vfi00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
vfi00150 Androgen and estrogen metabolism SBML MML
vfi00220 (Undocumented) SBML MML
vfi00230 Purine metabolism SBML MML
vfi00240 Pyrimidine metabolism SBML MML
vfi00251 (Undocumented) SBML MML
vfi00252 (Undocumented) SBML MML
vfi00260 Glycine, serine and threonine metabolism SBML MML
vfi00271 (Undocumented) SBML MML
vfi00272 (Undocumented) SBML MML
vfi00280 Valine, leucine and isoleucine degradation SBML MML
vfi00281 Geraniol degradation SBML MML
vfi00290 Valine, leucine and isoleucine biosynthesis SBML MML
vfi00300 Lysine biosynthesis SBML MML
vfi00310 Lysine degradation SBML MML
vfi00311 Penicillin and cephalosporin biosynthesis SBML MML
vfi00330 Arginine and proline metabolism SBML MML
vfi00340 Histidine metabolism SBML MML
vfi00350 Tyrosine metabolism SBML MML
vfi00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
vfi00360 Phenylalanine metabolism SBML MML
vfi00362 (Undocumented) SBML MML
vfi00380 Tryptophan metabolism SBML MML
vfi00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
vfi00401 Novobiocin biosynthesis SBML MML
vfi00410 beta-Alanine metabolism SBML MML
vfi00430 Taurine and hypotaurine metabolism SBML MML
vfi00440 Phosphonate and phosphinate metabolism SBML MML
vfi00450 Selenoamino acid metabolism SBML MML
vfi00460 (Undocumented) SBML MML
vfi00471 D-Glutamine and D-glutamate metabolism SBML MML
vfi00473 D-Alanine metabolism SBML MML
vfi00480 Glutathione metabolism SBML MML
vfi00500 Starch and sucrose metabolism SBML MML
vfi00520 Amino sugar and nucleotide sugar metabolism SBML MML
vfi00521 Streptomycin biosynthesis SBML MML
vfi00523 Polyketide sugar unit biosynthesis SBML MML
vfi00530 (Undocumented) SBML MML
vfi00540 Lipopolysaccharide biosynthesis SBML MML
vfi00550 Peptidoglycan biosynthesis SBML MML
vfi00561 Glycerolipid metabolism SBML MML
vfi00562 Inositol phosphate metabolism SBML MML
vfi00564 Glycerophospholipid metabolism SBML MML
vfi00592 alpha-Linolenic acid metabolism SBML MML
vfi00600 Sphingolipid metabolism SBML MML
vfi00620 Pyruvate metabolism SBML MML
vfi00622 Toluene and xylene degradation SBML MML
vfi00624 1- and 2-Methylnaphthalene degradation SBML MML
vfi00626 Naphthalene and anthracene degradation SBML MML
vfi00628 Fluorene degradation SBML MML
vfi00630 Glyoxylate and dicarboxylate metabolism SBML MML
vfi00632 (Undocumented) SBML MML
vfi00633 Trinitrotoluene degradation SBML MML
vfi00640 Propanoate metabolism SBML MML
vfi00641 3-Chloroacrylic acid degradation SBML MML
vfi00642 Ethylbenzene degradation SBML MML
vfi00650 Butanoate metabolism SBML MML
vfi00660 C5-Branched dibasic acid metabolism SBML MML
vfi00670 One carbon pool by folate SBML MML
vfi00680 Methane metabolism SBML MML
vfi00710 (Undocumented) SBML MML
vfi00720 (Undocumented) SBML MML
vfi00730 Thiamine metabolism SBML MML
vfi00740 Riboflavin metabolism SBML MML
vfi00750 Vitamin B6 metabolism SBML MML
vfi00760 Nicotinate and nicotinamide metabolism SBML MML
vfi00770 Pantothenate and CoA biosynthesis SBML MML
vfi00780 Biotin metabolism SBML MML
vfi00785 Lipoic acid metabolism SBML MML
vfi00790 Folate biosynthesis SBML MML
vfi00791 Atrazine degradation SBML MML
vfi00860 Porphyrin and chlorophyll metabolism SBML MML
vfi00900 Terpenoid backbone biosynthesis SBML MML
vfi00903 (Undocumented) SBML MML
vfi00910 Nitrogen metabolism SBML MML
vfi00920 Sulfur metabolism SBML MML
vfi00930 Caprolactam degradation SBML MML
vfi00940 (Undocumented) SBML MML
vfi00950 (Undocumented) SBML MML
vfi00960 (Undocumented) SBML MML
vfi00970 Aminoacyl-tRNA biosynthesis SBML MML
vfi00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
vfi00982 (Undocumented) SBML MML
vfi00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.