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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism vch: Vibrio cholerae O1

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
vch00010 Glycolysis / Gluconeogenesis SBML MML
vch00020 Citrate cycle (TCA cycle) SBML MML
vch00030 Pentose phosphate pathway SBML MML
vch00040 Pentose and glucuronate interconversions SBML MML
vch00051 Fructose and mannose metabolism SBML MML
vch00052 Galactose metabolism SBML MML
vch00053 Ascorbate and aldarate metabolism SBML MML
vch00061 Fatty acid biosynthesis SBML MML
vch00062 Fatty acid elongation in mitochondria SBML MML
vch00071 Fatty acid metabolism SBML MML
vch00100 (Undocumented) SBML MML
vch00120 (Undocumented) SBML MML
vch00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
vch00220 (Undocumented) SBML MML
vch00230 Purine metabolism SBML MML
vch00240 Pyrimidine metabolism SBML MML
vch00251 (Undocumented) SBML MML
vch00252 (Undocumented) SBML MML
vch00260 Glycine, serine and threonine metabolism SBML MML
vch00271 (Undocumented) SBML MML
vch00272 (Undocumented) SBML MML
vch00280 Valine, leucine and isoleucine degradation SBML MML
vch00281 Geraniol degradation SBML MML
vch00290 Valine, leucine and isoleucine biosynthesis SBML MML
vch00300 Lysine biosynthesis SBML MML
vch00310 Lysine degradation SBML MML
vch00330 Arginine and proline metabolism SBML MML
vch00340 Histidine metabolism SBML MML
vch00350 Tyrosine metabolism SBML MML
vch00360 Phenylalanine metabolism SBML MML
vch00361 gamma-Hexachlorocyclohexane degradation SBML MML
vch00362 (Undocumented) SBML MML
vch00363 Bisphenol A degradation SBML MML
vch00380 Tryptophan metabolism SBML MML
vch00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
vch00401 Novobiocin biosynthesis SBML MML
vch00410 beta-Alanine metabolism SBML MML
vch00430 Taurine and hypotaurine metabolism SBML MML
vch00440 Phosphonate and phosphinate metabolism SBML MML
vch00450 Selenoamino acid metabolism SBML MML
vch00460 (Undocumented) SBML MML
vch00471 D-Glutamine and D-glutamate metabolism SBML MML
vch00473 D-Alanine metabolism SBML MML
vch00480 Glutathione metabolism SBML MML
vch00500 Starch and sucrose metabolism SBML MML
vch00520 Amino sugar and nucleotide sugar metabolism SBML MML
vch00521 Streptomycin biosynthesis SBML MML
vch00530 (Undocumented) SBML MML
vch00540 Lipopolysaccharide biosynthesis SBML MML
vch00550 Peptidoglycan biosynthesis SBML MML
vch00561 Glycerolipid metabolism SBML MML
vch00562 Inositol phosphate metabolism SBML MML
vch00564 Glycerophospholipid metabolism SBML MML
vch00592 alpha-Linolenic acid metabolism SBML MML
vch00600 Sphingolipid metabolism SBML MML
vch00620 Pyruvate metabolism SBML MML
vch00624 1- and 2-Methylnaphthalene degradation SBML MML
vch00626 Naphthalene and anthracene degradation SBML MML
vch00630 Glyoxylate and dicarboxylate metabolism SBML MML
vch00632 (Undocumented) SBML MML
vch00633 Trinitrotoluene degradation SBML MML
vch00640 Propanoate metabolism SBML MML
vch00641 3-Chloroacrylic acid degradation SBML MML
vch00642 Ethylbenzene degradation SBML MML
vch00650 Butanoate metabolism SBML MML
vch00660 C5-Branched dibasic acid metabolism SBML MML
vch00670 One carbon pool by folate SBML MML
vch00680 Methane metabolism SBML MML
vch00710 (Undocumented) SBML MML
vch00720 (Undocumented) SBML MML
vch00730 Thiamine metabolism SBML MML
vch00740 Riboflavin metabolism SBML MML
vch00750 Vitamin B6 metabolism SBML MML
vch00760 Nicotinate and nicotinamide metabolism SBML MML
vch00770 Pantothenate and CoA biosynthesis SBML MML
vch00780 Biotin metabolism SBML MML
vch00785 Lipoic acid metabolism SBML MML
vch00790 Folate biosynthesis SBML MML
vch00860 Porphyrin and chlorophyll metabolism SBML MML
vch00900 Terpenoid backbone biosynthesis SBML MML
vch00903 (Undocumented) SBML MML
vch00910 Nitrogen metabolism SBML MML
vch00920 Sulfur metabolism SBML MML
vch00930 Caprolactam degradation SBML MML
vch00940 (Undocumented) SBML MML
vch00950 (Undocumented) SBML MML
vch00960 (Undocumented) SBML MML
vch00970 Aminoacyl-tRNA biosynthesis SBML MML
vch00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
vch00982 (Undocumented) SBML MML
vch00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.