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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism tvo: Thermoplasma volcanium

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
tvo00010 Glycolysis / Gluconeogenesis SBML MML
tvo00020 Citrate cycle (TCA cycle) SBML MML
tvo00030 Pentose phosphate pathway SBML MML
tvo00040 Pentose and glucuronate interconversions SBML MML
tvo00051 Fructose and mannose metabolism SBML MML
tvo00052 Galactose metabolism SBML MML
tvo00061 Fatty acid biosynthesis SBML MML
tvo00062 Fatty acid elongation in mitochondria SBML MML
tvo00071 Fatty acid metabolism SBML MML
tvo00100 (Undocumented) SBML MML
tvo00120 (Undocumented) SBML MML
tvo00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
tvo00220 (Undocumented) SBML MML
tvo00230 Purine metabolism SBML MML
tvo00240 Pyrimidine metabolism SBML MML
tvo00251 (Undocumented) SBML MML
tvo00252 (Undocumented) SBML MML
tvo00260 Glycine, serine and threonine metabolism SBML MML
tvo00271 (Undocumented) SBML MML
tvo00272 (Undocumented) SBML MML
tvo00280 Valine, leucine and isoleucine degradation SBML MML
tvo00281 Geraniol degradation SBML MML
tvo00290 Valine, leucine and isoleucine biosynthesis SBML MML
tvo00300 Lysine biosynthesis SBML MML
tvo00310 Lysine degradation SBML MML
tvo00330 Arginine and proline metabolism SBML MML
tvo00340 Histidine metabolism SBML MML
tvo00350 Tyrosine metabolism SBML MML
tvo00360 Phenylalanine metabolism SBML MML
tvo00362 (Undocumented) SBML MML
tvo00380 Tryptophan metabolism SBML MML
tvo00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
tvo00401 Novobiocin biosynthesis SBML MML
tvo00410 beta-Alanine metabolism SBML MML
tvo00450 Selenoamino acid metabolism SBML MML
tvo00460 (Undocumented) SBML MML
tvo00480 Glutathione metabolism SBML MML
tvo00500 Starch and sucrose metabolism SBML MML
tvo00510 (Undocumented) SBML MML
tvo00520 Amino sugar and nucleotide sugar metabolism SBML MML
tvo00521 Streptomycin biosynthesis SBML MML
tvo00523 Polyketide sugar unit biosynthesis SBML MML
tvo00550 Peptidoglycan biosynthesis SBML MML
tvo00561 Glycerolipid metabolism SBML MML
tvo00564 Glycerophospholipid metabolism SBML MML
tvo00592 alpha-Linolenic acid metabolism SBML MML
tvo00620 Pyruvate metabolism SBML MML
tvo00624 1- and 2-Methylnaphthalene degradation SBML MML
tvo00626 Naphthalene and anthracene degradation SBML MML
tvo00630 Glyoxylate and dicarboxylate metabolism SBML MML
tvo00632 (Undocumented) SBML MML
tvo00640 Propanoate metabolism SBML MML
tvo00641 3-Chloroacrylic acid degradation SBML MML
tvo00650 Butanoate metabolism SBML MML
tvo00670 One carbon pool by folate SBML MML
tvo00680 Methane metabolism SBML MML
tvo00710 (Undocumented) SBML MML
tvo00720 (Undocumented) SBML MML
tvo00730 Thiamine metabolism SBML MML
tvo00750 Vitamin B6 metabolism SBML MML
tvo00760 Nicotinate and nicotinamide metabolism SBML MML
tvo00770 Pantothenate and CoA biosynthesis SBML MML
tvo00785 Lipoic acid metabolism SBML MML
tvo00790 Folate biosynthesis SBML MML
tvo00860 Porphyrin and chlorophyll metabolism SBML MML
tvo00900 Terpenoid backbone biosynthesis SBML MML
tvo00903 (Undocumented) SBML MML
tvo00910 Nitrogen metabolism SBML MML
tvo00920 Sulfur metabolism SBML MML
tvo00930 Caprolactam degradation SBML MML
tvo00970 Aminoacyl-tRNA biosynthesis SBML MML
tvo00982 (Undocumented) SBML MML
tvo00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.