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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ttj: Thermus thermophilus HB8

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ttj00010 Glycolysis / Gluconeogenesis SBML MML
ttj00020 Citrate cycle (TCA cycle) SBML MML
ttj00030 Pentose phosphate pathway SBML MML
ttj00040 Pentose and glucuronate interconversions SBML MML
ttj00051 Fructose and mannose metabolism SBML MML
ttj00052 Galactose metabolism SBML MML
ttj00061 Fatty acid biosynthesis SBML MML
ttj00062 Fatty acid elongation in mitochondria SBML MML
ttj00071 Fatty acid metabolism SBML MML
ttj00072 Synthesis and degradation of ketone bodies SBML MML
ttj00100 (Undocumented) SBML MML
ttj00120 (Undocumented) SBML MML
ttj00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ttj00220 (Undocumented) SBML MML
ttj00230 Purine metabolism SBML MML
ttj00240 Pyrimidine metabolism SBML MML
ttj00251 (Undocumented) SBML MML
ttj00252 (Undocumented) SBML MML
ttj00260 Glycine, serine and threonine metabolism SBML MML
ttj00271 (Undocumented) SBML MML
ttj00272 (Undocumented) SBML MML
ttj00280 Valine, leucine and isoleucine degradation SBML MML
ttj00281 Geraniol degradation SBML MML
ttj00290 Valine, leucine and isoleucine biosynthesis SBML MML
ttj00300 Lysine biosynthesis SBML MML
ttj00310 Lysine degradation SBML MML
ttj00330 Arginine and proline metabolism SBML MML
ttj00340 Histidine metabolism SBML MML
ttj00350 Tyrosine metabolism SBML MML
ttj00360 Phenylalanine metabolism SBML MML
ttj00362 (Undocumented) SBML MML
ttj00380 Tryptophan metabolism SBML MML
ttj00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ttj00401 Novobiocin biosynthesis SBML MML
ttj00410 beta-Alanine metabolism SBML MML
ttj00430 Taurine and hypotaurine metabolism SBML MML
ttj00450 Selenoamino acid metabolism SBML MML
ttj00460 (Undocumented) SBML MML
ttj00471 D-Glutamine and D-glutamate metabolism SBML MML
ttj00473 D-Alanine metabolism SBML MML
ttj00480 Glutathione metabolism SBML MML
ttj00500 Starch and sucrose metabolism SBML MML
ttj00520 Amino sugar and nucleotide sugar metabolism SBML MML
ttj00521 Streptomycin biosynthesis SBML MML
ttj00530 (Undocumented) SBML MML
ttj00550 Peptidoglycan biosynthesis SBML MML
ttj00561 Glycerolipid metabolism SBML MML
ttj00562 Inositol phosphate metabolism SBML MML
ttj00564 Glycerophospholipid metabolism SBML MML
ttj00592 alpha-Linolenic acid metabolism SBML MML
ttj00600 Sphingolipid metabolism SBML MML
ttj00620 Pyruvate metabolism SBML MML
ttj00621 (Undocumented) SBML MML
ttj00622 Toluene and xylene degradation SBML MML
ttj00624 1- and 2-Methylnaphthalene degradation SBML MML
ttj00627 1,4-Dichlorobenzene degradation SBML MML
ttj00628 Fluorene degradation SBML MML
ttj00629 Carbazole degradation SBML MML
ttj00630 Glyoxylate and dicarboxylate metabolism SBML MML
ttj00632 (Undocumented) SBML MML
ttj00640 Propanoate metabolism SBML MML
ttj00641 3-Chloroacrylic acid degradation SBML MML
ttj00642 Ethylbenzene degradation SBML MML
ttj00643 Styrene degradation SBML MML
ttj00650 Butanoate metabolism SBML MML
ttj00660 C5-Branched dibasic acid metabolism SBML MML
ttj00670 One carbon pool by folate SBML MML
ttj00680 Methane metabolism SBML MML
ttj00710 (Undocumented) SBML MML
ttj00720 (Undocumented) SBML MML
ttj00730 Thiamine metabolism SBML MML
ttj00740 Riboflavin metabolism SBML MML
ttj00750 Vitamin B6 metabolism SBML MML
ttj00760 Nicotinate and nicotinamide metabolism SBML MML
ttj00770 Pantothenate and CoA biosynthesis SBML MML
ttj00780 Biotin metabolism SBML MML
ttj00785 Lipoic acid metabolism SBML MML
ttj00790 Folate biosynthesis SBML MML
ttj00860 Porphyrin and chlorophyll metabolism SBML MML
ttj00900 Terpenoid backbone biosynthesis SBML MML
ttj00903 (Undocumented) SBML MML
ttj00906 Carotenoid biosynthesis SBML MML
ttj00910 Nitrogen metabolism SBML MML
ttj00920 Sulfur metabolism SBML MML
ttj00930 Caprolactam degradation SBML MML
ttj00960 (Undocumented) SBML MML
ttj00970 Aminoacyl-tRNA biosynthesis SBML MML
ttj00982 (Undocumented) SBML MML
ttj00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.