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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism trq: Thermotoga sp. RQ2

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
trq00010 Glycolysis / Gluconeogenesis SBML MML
trq00020 Citrate cycle (TCA cycle) SBML MML
trq00030 Pentose phosphate pathway SBML MML
trq00040 Pentose and glucuronate interconversions SBML MML
trq00051 Fructose and mannose metabolism SBML MML
trq00052 Galactose metabolism SBML MML
trq00061 Fatty acid biosynthesis SBML MML
trq00100 (Undocumented) SBML MML
trq00120 (Undocumented) SBML MML
trq00220 (Undocumented) SBML MML
trq00230 Purine metabolism SBML MML
trq00240 Pyrimidine metabolism SBML MML
trq00251 (Undocumented) SBML MML
trq00252 (Undocumented) SBML MML
trq00260 Glycine, serine and threonine metabolism SBML MML
trq00271 (Undocumented) SBML MML
trq00272 (Undocumented) SBML MML
trq00280 Valine, leucine and isoleucine degradation SBML MML
trq00290 Valine, leucine and isoleucine biosynthesis SBML MML
trq00300 Lysine biosynthesis SBML MML
trq00330 Arginine and proline metabolism SBML MML
trq00340 Histidine metabolism SBML MML
trq00350 Tyrosine metabolism SBML MML
trq00360 Phenylalanine metabolism SBML MML
trq00361 gamma-Hexachlorocyclohexane degradation SBML MML
trq00380 Tryptophan metabolism SBML MML
trq00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
trq00401 Novobiocin biosynthesis SBML MML
trq00410 beta-Alanine metabolism SBML MML
trq00430 Taurine and hypotaurine metabolism SBML MML
trq00450 Selenoamino acid metabolism SBML MML
trq00460 (Undocumented) SBML MML
trq00471 D-Glutamine and D-glutamate metabolism SBML MML
trq00480 Glutathione metabolism SBML MML
trq00500 Starch and sucrose metabolism SBML MML
trq00520 Amino sugar and nucleotide sugar metabolism SBML MML
trq00521 Streptomycin biosynthesis SBML MML
trq00523 Polyketide sugar unit biosynthesis SBML MML
trq00530 (Undocumented) SBML MML
trq00550 Peptidoglycan biosynthesis SBML MML
trq00561 Glycerolipid metabolism SBML MML
trq00562 Inositol phosphate metabolism SBML MML
trq00564 Glycerophospholipid metabolism SBML MML
trq00600 Sphingolipid metabolism SBML MML
trq00620 Pyruvate metabolism SBML MML
trq00624 1- and 2-Methylnaphthalene degradation SBML MML
trq00630 Glyoxylate and dicarboxylate metabolism SBML MML
trq00632 (Undocumented) SBML MML
trq00640 Propanoate metabolism SBML MML
trq00641 3-Chloroacrylic acid degradation SBML MML
trq00643 Styrene degradation SBML MML
trq00650 Butanoate metabolism SBML MML
trq00670 One carbon pool by folate SBML MML
trq00680 Methane metabolism SBML MML
trq00710 (Undocumented) SBML MML
trq00720 (Undocumented) SBML MML
trq00730 Thiamine metabolism SBML MML
trq00740 Riboflavin metabolism SBML MML
trq00750 Vitamin B6 metabolism SBML MML
trq00760 Nicotinate and nicotinamide metabolism SBML MML
trq00770 Pantothenate and CoA biosynthesis SBML MML
trq00780 Biotin metabolism SBML MML
trq00790 Folate biosynthesis SBML MML
trq00860 Porphyrin and chlorophyll metabolism SBML MML
trq00900 Terpenoid backbone biosynthesis SBML MML
trq00910 Nitrogen metabolism SBML MML
trq00920 Sulfur metabolism SBML MML
trq00960 (Undocumented) SBML MML
trq00970 Aminoacyl-tRNA biosynthesis SBML MML
trq00982 (Undocumented) SBML MML
trq00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.