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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism tpt: Thermotoga petrophila

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
tpt00010 Glycolysis / Gluconeogenesis SBML MML
tpt00020 Citrate cycle (TCA cycle) SBML MML
tpt00030 Pentose phosphate pathway SBML MML
tpt00040 Pentose and glucuronate interconversions SBML MML
tpt00051 Fructose and mannose metabolism SBML MML
tpt00052 Galactose metabolism SBML MML
tpt00061 Fatty acid biosynthesis SBML MML
tpt00100 (Undocumented) SBML MML
tpt00120 (Undocumented) SBML MML
tpt00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
tpt00220 (Undocumented) SBML MML
tpt00230 Purine metabolism SBML MML
tpt00240 Pyrimidine metabolism SBML MML
tpt00251 (Undocumented) SBML MML
tpt00252 (Undocumented) SBML MML
tpt00260 Glycine, serine and threonine metabolism SBML MML
tpt00271 (Undocumented) SBML MML
tpt00272 (Undocumented) SBML MML
tpt00280 Valine, leucine and isoleucine degradation SBML MML
tpt00290 Valine, leucine and isoleucine biosynthesis SBML MML
tpt00300 Lysine biosynthesis SBML MML
tpt00330 Arginine and proline metabolism SBML MML
tpt00340 Histidine metabolism SBML MML
tpt00350 Tyrosine metabolism SBML MML
tpt00360 Phenylalanine metabolism SBML MML
tpt00361 gamma-Hexachlorocyclohexane degradation SBML MML
tpt00380 Tryptophan metabolism SBML MML
tpt00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
tpt00401 Novobiocin biosynthesis SBML MML
tpt00410 beta-Alanine metabolism SBML MML
tpt00430 Taurine and hypotaurine metabolism SBML MML
tpt00450 Selenoamino acid metabolism SBML MML
tpt00460 (Undocumented) SBML MML
tpt00471 D-Glutamine and D-glutamate metabolism SBML MML
tpt00480 Glutathione metabolism SBML MML
tpt00500 Starch and sucrose metabolism SBML MML
tpt00520 Amino sugar and nucleotide sugar metabolism SBML MML
tpt00521 Streptomycin biosynthesis SBML MML
tpt00530 (Undocumented) SBML MML
tpt00550 Peptidoglycan biosynthesis SBML MML
tpt00561 Glycerolipid metabolism SBML MML
tpt00562 Inositol phosphate metabolism SBML MML
tpt00564 Glycerophospholipid metabolism SBML MML
tpt00600 Sphingolipid metabolism SBML MML
tpt00620 Pyruvate metabolism SBML MML
tpt00624 1- and 2-Methylnaphthalene degradation SBML MML
tpt00630 Glyoxylate and dicarboxylate metabolism SBML MML
tpt00632 (Undocumented) SBML MML
tpt00640 Propanoate metabolism SBML MML
tpt00641 3-Chloroacrylic acid degradation SBML MML
tpt00643 Styrene degradation SBML MML
tpt00650 Butanoate metabolism SBML MML
tpt00670 One carbon pool by folate SBML MML
tpt00680 Methane metabolism SBML MML
tpt00710 (Undocumented) SBML MML
tpt00720 (Undocumented) SBML MML
tpt00730 Thiamine metabolism SBML MML
tpt00740 Riboflavin metabolism SBML MML
tpt00750 Vitamin B6 metabolism SBML MML
tpt00760 Nicotinate and nicotinamide metabolism SBML MML
tpt00770 Pantothenate and CoA biosynthesis SBML MML
tpt00780 Biotin metabolism SBML MML
tpt00790 Folate biosynthesis SBML MML
tpt00860 Porphyrin and chlorophyll metabolism SBML MML
tpt00900 Terpenoid backbone biosynthesis SBML MML
tpt00910 Nitrogen metabolism SBML MML
tpt00920 Sulfur metabolism SBML MML
tpt00970 Aminoacyl-tRNA biosynthesis SBML MML
tpt00982 (Undocumented) SBML MML
tpt00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.