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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism tpe: Thermofilum pendens

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
tpe00010 Glycolysis / Gluconeogenesis SBML MML
tpe00020 Citrate cycle (TCA cycle) SBML MML
tpe00030 Pentose phosphate pathway SBML MML
tpe00040 Pentose and glucuronate interconversions SBML MML
tpe00051 Fructose and mannose metabolism SBML MML
tpe00052 Galactose metabolism SBML MML
tpe00053 Ascorbate and aldarate metabolism SBML MML
tpe00061 Fatty acid biosynthesis SBML MML
tpe00071 Fatty acid metabolism SBML MML
tpe00100 (Undocumented) SBML MML
tpe00120 (Undocumented) SBML MML
tpe00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
tpe00220 (Undocumented) SBML MML
tpe00230 Purine metabolism SBML MML
tpe00240 Pyrimidine metabolism SBML MML
tpe00251 (Undocumented) SBML MML
tpe00252 (Undocumented) SBML MML
tpe00260 Glycine, serine and threonine metabolism SBML MML
tpe00271 (Undocumented) SBML MML
tpe00272 (Undocumented) SBML MML
tpe00280 Valine, leucine and isoleucine degradation SBML MML
tpe00290 Valine, leucine and isoleucine biosynthesis SBML MML
tpe00300 Lysine biosynthesis SBML MML
tpe00330 Arginine and proline metabolism SBML MML
tpe00340 Histidine metabolism SBML MML
tpe00350 Tyrosine metabolism SBML MML
tpe00360 Phenylalanine metabolism SBML MML
tpe00380 Tryptophan metabolism SBML MML
tpe00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
tpe00410 beta-Alanine metabolism SBML MML
tpe00450 Selenoamino acid metabolism SBML MML
tpe00480 Glutathione metabolism SBML MML
tpe00500 Starch and sucrose metabolism SBML MML
tpe00510 (Undocumented) SBML MML
tpe00520 Amino sugar and nucleotide sugar metabolism SBML MML
tpe00521 Streptomycin biosynthesis SBML MML
tpe00523 Polyketide sugar unit biosynthesis SBML MML
tpe00530 (Undocumented) SBML MML
tpe00550 Peptidoglycan biosynthesis SBML MML
tpe00561 Glycerolipid metabolism SBML MML
tpe00562 Inositol phosphate metabolism SBML MML
tpe00564 Glycerophospholipid metabolism SBML MML
tpe00600 Sphingolipid metabolism SBML MML
tpe00620 Pyruvate metabolism SBML MML
tpe00624 1- and 2-Methylnaphthalene degradation SBML MML
tpe00630 Glyoxylate and dicarboxylate metabolism SBML MML
tpe00632 (Undocumented) SBML MML
tpe00640 Propanoate metabolism SBML MML
tpe00641 3-Chloroacrylic acid degradation SBML MML
tpe00650 Butanoate metabolism SBML MML
tpe00670 One carbon pool by folate SBML MML
tpe00680 Methane metabolism SBML MML
tpe00710 (Undocumented) SBML MML
tpe00720 (Undocumented) SBML MML
tpe00730 Thiamine metabolism SBML MML
tpe00760 Nicotinate and nicotinamide metabolism SBML MML
tpe00780 Biotin metabolism SBML MML
tpe00860 Porphyrin and chlorophyll metabolism SBML MML
tpe00900 Terpenoid backbone biosynthesis SBML MML
tpe00910 Nitrogen metabolism SBML MML
tpe00920 Sulfur metabolism SBML MML
tpe00940 (Undocumented) SBML MML
tpe00970 Aminoacyl-tRNA biosynthesis SBML MML
tpe00982 (Undocumented) SBML MML
tpe00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.