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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism tpa: Treponema pallidum subsp. pallidum Nichols

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
tpa00010 Glycolysis / Gluconeogenesis SBML MML
tpa00030 Pentose phosphate pathway SBML MML
tpa00051 Fructose and mannose metabolism SBML MML
tpa00100 (Undocumented) SBML MML
tpa00220 (Undocumented) SBML MML
tpa00230 Purine metabolism SBML MML
tpa00240 Pyrimidine metabolism SBML MML
tpa00251 (Undocumented) SBML MML
tpa00252 (Undocumented) SBML MML
tpa00260 Glycine, serine and threonine metabolism SBML MML
tpa00271 (Undocumented) SBML MML
tpa00272 (Undocumented) SBML MML
tpa00290 Valine, leucine and isoleucine biosynthesis SBML MML
tpa00300 Lysine biosynthesis SBML MML
tpa00330 Arginine and proline metabolism SBML MML
tpa00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
tpa00450 Selenoamino acid metabolism SBML MML
tpa00460 (Undocumented) SBML MML
tpa00500 Starch and sucrose metabolism SBML MML
tpa00530 (Undocumented) SBML MML
tpa00550 Peptidoglycan biosynthesis SBML MML
tpa00564 Glycerophospholipid metabolism SBML MML
tpa00565 Ether lipid metabolism SBML MML
tpa00620 Pyruvate metabolism SBML MML
tpa00630 Glyoxylate and dicarboxylate metabolism SBML MML
tpa00670 One carbon pool by folate SBML MML
tpa00710 (Undocumented) SBML MML
tpa00730 Thiamine metabolism SBML MML
tpa00750 Vitamin B6 metabolism SBML MML
tpa00760 Nicotinate and nicotinamide metabolism SBML MML
tpa00770 Pantothenate and CoA biosynthesis SBML MML
tpa00790 Folate biosynthesis SBML MML
tpa00900 Terpenoid backbone biosynthesis SBML MML
tpa00910 Nitrogen metabolism SBML MML
tpa00970 Aminoacyl-tRNA biosynthesis SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.