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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism tle: Thermotoga lettingae

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
tle00010 Glycolysis / Gluconeogenesis SBML MML
tle00020 Citrate cycle (TCA cycle) SBML MML
tle00030 Pentose phosphate pathway SBML MML
tle00040 Pentose and glucuronate interconversions SBML MML
tle00051 Fructose and mannose metabolism SBML MML
tle00052 Galactose metabolism SBML MML
tle00061 Fatty acid biosynthesis SBML MML
tle00071 Fatty acid metabolism SBML MML
tle00072 Synthesis and degradation of ketone bodies SBML MML
tle00100 (Undocumented) SBML MML
tle00120 (Undocumented) SBML MML
tle00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
tle00220 (Undocumented) SBML MML
tle00230 Purine metabolism SBML MML
tle00240 Pyrimidine metabolism SBML MML
tle00251 (Undocumented) SBML MML
tle00252 (Undocumented) SBML MML
tle00260 Glycine, serine and threonine metabolism SBML MML
tle00271 (Undocumented) SBML MML
tle00272 (Undocumented) SBML MML
tle00280 Valine, leucine and isoleucine degradation SBML MML
tle00290 Valine, leucine and isoleucine biosynthesis SBML MML
tle00300 Lysine biosynthesis SBML MML
tle00310 Lysine degradation SBML MML
tle00330 Arginine and proline metabolism SBML MML
tle00340 Histidine metabolism SBML MML
tle00350 Tyrosine metabolism SBML MML
tle00360 Phenylalanine metabolism SBML MML
tle00361 gamma-Hexachlorocyclohexane degradation SBML MML
tle00380 Tryptophan metabolism SBML MML
tle00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
tle00401 Novobiocin biosynthesis SBML MML
tle00410 beta-Alanine metabolism SBML MML
tle00430 Taurine and hypotaurine metabolism SBML MML
tle00450 Selenoamino acid metabolism SBML MML
tle00460 (Undocumented) SBML MML
tle00471 D-Glutamine and D-glutamate metabolism SBML MML
tle00480 Glutathione metabolism SBML MML
tle00500 Starch and sucrose metabolism SBML MML
tle00520 Amino sugar and nucleotide sugar metabolism SBML MML
tle00521 Streptomycin biosynthesis SBML MML
tle00530 (Undocumented) SBML MML
tle00550 Peptidoglycan biosynthesis SBML MML
tle00561 Glycerolipid metabolism SBML MML
tle00562 Inositol phosphate metabolism SBML MML
tle00564 Glycerophospholipid metabolism SBML MML
tle00600 Sphingolipid metabolism SBML MML
tle00620 Pyruvate metabolism SBML MML
tle00624 1- and 2-Methylnaphthalene degradation SBML MML
tle00630 Glyoxylate and dicarboxylate metabolism SBML MML
tle00632 (Undocumented) SBML MML
tle00640 Propanoate metabolism SBML MML
tle00641 3-Chloroacrylic acid degradation SBML MML
tle00643 Styrene degradation SBML MML
tle00650 Butanoate metabolism SBML MML
tle00670 One carbon pool by folate SBML MML
tle00680 Methane metabolism SBML MML
tle00710 (Undocumented) SBML MML
tle00720 (Undocumented) SBML MML
tle00730 Thiamine metabolism SBML MML
tle00740 Riboflavin metabolism SBML MML
tle00760 Nicotinate and nicotinamide metabolism SBML MML
tle00770 Pantothenate and CoA biosynthesis SBML MML
tle00780 Biotin metabolism SBML MML
tle00790 Folate biosynthesis SBML MML
tle00860 Porphyrin and chlorophyll metabolism SBML MML
tle00900 Terpenoid backbone biosynthesis SBML MML
tle00910 Nitrogen metabolism SBML MML
tle00920 Sulfur metabolism SBML MML
tle00941 (Undocumented) SBML MML
tle00960 (Undocumented) SBML MML
tle00970 Aminoacyl-tRNA biosynthesis SBML MML
tle00982 (Undocumented) SBML MML
tle00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.