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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ter: Trichodesmium erythraeum

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ter00010 Glycolysis / Gluconeogenesis SBML MML
ter00020 Citrate cycle (TCA cycle) SBML MML
ter00030 Pentose phosphate pathway SBML MML
ter00040 Pentose and glucuronate interconversions SBML MML
ter00051 Fructose and mannose metabolism SBML MML
ter00052 Galactose metabolism SBML MML
ter00053 Ascorbate and aldarate metabolism SBML MML
ter00061 Fatty acid biosynthesis SBML MML
ter00071 Fatty acid metabolism SBML MML
ter00100 (Undocumented) SBML MML
ter00120 (Undocumented) SBML MML
ter00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
ter00220 (Undocumented) SBML MML
ter00230 Purine metabolism SBML MML
ter00240 Pyrimidine metabolism SBML MML
ter00251 (Undocumented) SBML MML
ter00252 (Undocumented) SBML MML
ter00260 Glycine, serine and threonine metabolism SBML MML
ter00271 (Undocumented) SBML MML
ter00272 (Undocumented) SBML MML
ter00280 Valine, leucine and isoleucine degradation SBML MML
ter00290 Valine, leucine and isoleucine biosynthesis SBML MML
ter00300 Lysine biosynthesis SBML MML
ter00310 Lysine degradation SBML MML
ter00330 Arginine and proline metabolism SBML MML
ter00340 Histidine metabolism SBML MML
ter00350 Tyrosine metabolism SBML MML
ter00360 Phenylalanine metabolism SBML MML
ter00361 gamma-Hexachlorocyclohexane degradation SBML MML
ter00364 Fluorobenzoate degradation SBML MML
ter00380 Tryptophan metabolism SBML MML
ter00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ter00401 Novobiocin biosynthesis SBML MML
ter00410 beta-Alanine metabolism SBML MML
ter00430 Taurine and hypotaurine metabolism SBML MML
ter00450 Selenoamino acid metabolism SBML MML
ter00460 (Undocumented) SBML MML
ter00471 D-Glutamine and D-glutamate metabolism SBML MML
ter00473 D-Alanine metabolism SBML MML
ter00480 Glutathione metabolism SBML MML
ter00500 Starch and sucrose metabolism SBML MML
ter00520 Amino sugar and nucleotide sugar metabolism SBML MML
ter00521 Streptomycin biosynthesis SBML MML
ter00523 Polyketide sugar unit biosynthesis SBML MML
ter00530 (Undocumented) SBML MML
ter00540 Lipopolysaccharide biosynthesis SBML MML
ter00550 Peptidoglycan biosynthesis SBML MML
ter00561 Glycerolipid metabolism SBML MML
ter00562 Inositol phosphate metabolism SBML MML
ter00564 Glycerophospholipid metabolism SBML MML
ter00620 Pyruvate metabolism SBML MML
ter00624 1- and 2-Methylnaphthalene degradation SBML MML
ter00625 (Undocumented) SBML MML
ter00627 1,4-Dichlorobenzene degradation SBML MML
ter00630 Glyoxylate and dicarboxylate metabolism SBML MML
ter00632 (Undocumented) SBML MML
ter00640 Propanoate metabolism SBML MML
ter00641 3-Chloroacrylic acid degradation SBML MML
ter00643 Styrene degradation SBML MML
ter00650 Butanoate metabolism SBML MML
ter00660 C5-Branched dibasic acid metabolism SBML MML
ter00670 One carbon pool by folate SBML MML
ter00680 Methane metabolism SBML MML
ter00710 (Undocumented) SBML MML
ter00720 (Undocumented) SBML MML
ter00730 Thiamine metabolism SBML MML
ter00740 Riboflavin metabolism SBML MML
ter00750 Vitamin B6 metabolism SBML MML
ter00760 Nicotinate and nicotinamide metabolism SBML MML
ter00770 Pantothenate and CoA biosynthesis SBML MML
ter00780 Biotin metabolism SBML MML
ter00785 Lipoic acid metabolism SBML MML
ter00790 Folate biosynthesis SBML MML
ter00860 Porphyrin and chlorophyll metabolism SBML MML
ter00900 Terpenoid backbone biosynthesis SBML MML
ter00906 Carotenoid biosynthesis SBML MML
ter00910 Nitrogen metabolism SBML MML
ter00920 Sulfur metabolism SBML MML
ter00940 (Undocumented) SBML MML
ter00960 (Undocumented) SBML MML
ter00970 Aminoacyl-tRNA biosynthesis SBML MML
ter00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
ter00982 (Undocumented) SBML MML
ter00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.