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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism tel: Thermosynechococcus elongatus

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
tel00010 Glycolysis / Gluconeogenesis SBML MML
tel00020 Citrate cycle (TCA cycle) SBML MML
tel00030 Pentose phosphate pathway SBML MML
tel00040 Pentose and glucuronate interconversions SBML MML
tel00051 Fructose and mannose metabolism SBML MML
tel00052 Galactose metabolism SBML MML
tel00061 Fatty acid biosynthesis SBML MML
tel00071 Fatty acid metabolism SBML MML
tel00100 (Undocumented) SBML MML
tel00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
tel00220 (Undocumented) SBML MML
tel00230 Purine metabolism SBML MML
tel00240 Pyrimidine metabolism SBML MML
tel00251 (Undocumented) SBML MML
tel00252 (Undocumented) SBML MML
tel00260 Glycine, serine and threonine metabolism SBML MML
tel00271 (Undocumented) SBML MML
tel00272 (Undocumented) SBML MML
tel00280 Valine, leucine and isoleucine degradation SBML MML
tel00290 Valine, leucine and isoleucine biosynthesis SBML MML
tel00300 Lysine biosynthesis SBML MML
tel00330 Arginine and proline metabolism SBML MML
tel00340 Histidine metabolism SBML MML
tel00350 Tyrosine metabolism SBML MML
tel00360 Phenylalanine metabolism SBML MML
tel00361 gamma-Hexachlorocyclohexane degradation SBML MML
tel00364 Fluorobenzoate degradation SBML MML
tel00380 Tryptophan metabolism SBML MML
tel00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
tel00401 Novobiocin biosynthesis SBML MML
tel00410 beta-Alanine metabolism SBML MML
tel00430 Taurine and hypotaurine metabolism SBML MML
tel00450 Selenoamino acid metabolism SBML MML
tel00460 (Undocumented) SBML MML
tel00471 D-Glutamine and D-glutamate metabolism SBML MML
tel00473 D-Alanine metabolism SBML MML
tel00480 Glutathione metabolism SBML MML
tel00500 Starch and sucrose metabolism SBML MML
tel00520 Amino sugar and nucleotide sugar metabolism SBML MML
tel00521 Streptomycin biosynthesis SBML MML
tel00523 Polyketide sugar unit biosynthesis SBML MML
tel00530 (Undocumented) SBML MML
tel00540 Lipopolysaccharide biosynthesis SBML MML
tel00550 Peptidoglycan biosynthesis SBML MML
tel00561 Glycerolipid metabolism SBML MML
tel00562 Inositol phosphate metabolism SBML MML
tel00564 Glycerophospholipid metabolism SBML MML
tel00620 Pyruvate metabolism SBML MML
tel00624 1- and 2-Methylnaphthalene degradation SBML MML
tel00627 1,4-Dichlorobenzene degradation SBML MML
tel00630 Glyoxylate and dicarboxylate metabolism SBML MML
tel00640 Propanoate metabolism SBML MML
tel00641 3-Chloroacrylic acid degradation SBML MML
tel00650 Butanoate metabolism SBML MML
tel00670 One carbon pool by folate SBML MML
tel00710 (Undocumented) SBML MML
tel00720 (Undocumented) SBML MML
tel00730 Thiamine metabolism SBML MML
tel00740 Riboflavin metabolism SBML MML
tel00750 Vitamin B6 metabolism SBML MML
tel00760 Nicotinate and nicotinamide metabolism SBML MML
tel00770 Pantothenate and CoA biosynthesis SBML MML
tel00780 Biotin metabolism SBML MML
tel00785 Lipoic acid metabolism SBML MML
tel00790 Folate biosynthesis SBML MML
tel00860 Porphyrin and chlorophyll metabolism SBML MML
tel00900 Terpenoid backbone biosynthesis SBML MML
tel00906 Carotenoid biosynthesis SBML MML
tel00910 Nitrogen metabolism SBML MML
tel00920 Sulfur metabolism SBML MML
tel00941 (Undocumented) SBML MML
tel00970 Aminoacyl-tRNA biosynthesis SBML MML
tel00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
tel00982 (Undocumented) SBML MML
tel00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.