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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism tde: Treponema denticola

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
tde00010 Glycolysis / Gluconeogenesis SBML MML
tde00020 Citrate cycle (TCA cycle) SBML MML
tde00030 Pentose phosphate pathway SBML MML
tde00051 Fructose and mannose metabolism SBML MML
tde00052 Galactose metabolism SBML MML
tde00061 Fatty acid biosynthesis SBML MML
tde00071 Fatty acid metabolism SBML MML
tde00100 (Undocumented) SBML MML
tde00120 (Undocumented) SBML MML
tde00220 (Undocumented) SBML MML
tde00230 Purine metabolism SBML MML
tde00240 Pyrimidine metabolism SBML MML
tde00251 (Undocumented) SBML MML
tde00252 (Undocumented) SBML MML
tde00260 Glycine, serine and threonine metabolism SBML MML
tde00271 (Undocumented) SBML MML
tde00272 (Undocumented) SBML MML
tde00280 Valine, leucine and isoleucine degradation SBML MML
tde00290 Valine, leucine and isoleucine biosynthesis SBML MML
tde00300 Lysine biosynthesis SBML MML
tde00330 Arginine and proline metabolism SBML MML
tde00340 Histidine metabolism SBML MML
tde00350 Tyrosine metabolism SBML MML
tde00380 Tryptophan metabolism SBML MML
tde00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
tde00410 beta-Alanine metabolism SBML MML
tde00430 Taurine and hypotaurine metabolism SBML MML
tde00450 Selenoamino acid metabolism SBML MML
tde00460 (Undocumented) SBML MML
tde00471 D-Glutamine and D-glutamate metabolism SBML MML
tde00473 D-Alanine metabolism SBML MML
tde00480 Glutathione metabolism SBML MML
tde00500 Starch and sucrose metabolism SBML MML
tde00520 Amino sugar and nucleotide sugar metabolism SBML MML
tde00521 Streptomycin biosynthesis SBML MML
tde00523 Polyketide sugar unit biosynthesis SBML MML
tde00530 (Undocumented) SBML MML
tde00550 Peptidoglycan biosynthesis SBML MML
tde00561 Glycerolipid metabolism SBML MML
tde00564 Glycerophospholipid metabolism SBML MML
tde00565 Ether lipid metabolism SBML MML
tde00590 Arachidonic acid metabolism SBML MML
tde00620 Pyruvate metabolism SBML MML
tde00630 Glyoxylate and dicarboxylate metabolism SBML MML
tde00632 (Undocumented) SBML MML
tde00640 Propanoate metabolism SBML MML
tde00641 3-Chloroacrylic acid degradation SBML MML
tde00650 Butanoate metabolism SBML MML
tde00660 C5-Branched dibasic acid metabolism SBML MML
tde00670 One carbon pool by folate SBML MML
tde00710 (Undocumented) SBML MML
tde00720 (Undocumented) SBML MML
tde00730 Thiamine metabolism SBML MML
tde00740 Riboflavin metabolism SBML MML
tde00750 Vitamin B6 metabolism SBML MML
tde00760 Nicotinate and nicotinamide metabolism SBML MML
tde00770 Pantothenate and CoA biosynthesis SBML MML
tde00780 Biotin metabolism SBML MML
tde00785 Lipoic acid metabolism SBML MML
tde00790 Folate biosynthesis SBML MML
tde00860 Porphyrin and chlorophyll metabolism SBML MML
tde00900 Terpenoid backbone biosynthesis SBML MML
tde00910 Nitrogen metabolism SBML MML
tde00970 Aminoacyl-tRNA biosynthesis SBML MML
tde00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.