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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism tbd: Thiobacillus denitrificans

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
tbd00010 Glycolysis / Gluconeogenesis SBML MML
tbd00020 Citrate cycle (TCA cycle) SBML MML
tbd00030 Pentose phosphate pathway SBML MML
tbd00040 Pentose and glucuronate interconversions SBML MML
tbd00051 Fructose and mannose metabolism SBML MML
tbd00052 Galactose metabolism SBML MML
tbd00061 Fatty acid biosynthesis SBML MML
tbd00071 Fatty acid metabolism SBML MML
tbd00100 (Undocumented) SBML MML
tbd00120 (Undocumented) SBML MML
tbd00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
tbd00150 Androgen and estrogen metabolism SBML MML
tbd00220 (Undocumented) SBML MML
tbd00230 Purine metabolism SBML MML
tbd00240 Pyrimidine metabolism SBML MML
tbd00251 (Undocumented) SBML MML
tbd00252 (Undocumented) SBML MML
tbd00260 Glycine, serine and threonine metabolism SBML MML
tbd00271 (Undocumented) SBML MML
tbd00272 (Undocumented) SBML MML
tbd00280 Valine, leucine and isoleucine degradation SBML MML
tbd00290 Valine, leucine and isoleucine biosynthesis SBML MML
tbd00300 Lysine biosynthesis SBML MML
tbd00310 Lysine degradation SBML MML
tbd00330 Arginine and proline metabolism SBML MML
tbd00340 Histidine metabolism SBML MML
tbd00350 Tyrosine metabolism SBML MML
tbd00360 Phenylalanine metabolism SBML MML
tbd00361 gamma-Hexachlorocyclohexane degradation SBML MML
tbd00363 Bisphenol A degradation SBML MML
tbd00380 Tryptophan metabolism SBML MML
tbd00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
tbd00401 Novobiocin biosynthesis SBML MML
tbd00410 beta-Alanine metabolism SBML MML
tbd00430 Taurine and hypotaurine metabolism SBML MML
tbd00450 Selenoamino acid metabolism SBML MML
tbd00460 (Undocumented) SBML MML
tbd00471 D-Glutamine and D-glutamate metabolism SBML MML
tbd00472 D-Arginine and D-ornithine metabolism SBML MML
tbd00473 D-Alanine metabolism SBML MML
tbd00480 Glutathione metabolism SBML MML
tbd00500 Starch and sucrose metabolism SBML MML
tbd00520 Amino sugar and nucleotide sugar metabolism SBML MML
tbd00521 Streptomycin biosynthesis SBML MML
tbd00523 Polyketide sugar unit biosynthesis SBML MML
tbd00530 (Undocumented) SBML MML
tbd00540 Lipopolysaccharide biosynthesis SBML MML
tbd00550 Peptidoglycan biosynthesis SBML MML
tbd00561 Glycerolipid metabolism SBML MML
tbd00562 Inositol phosphate metabolism SBML MML
tbd00564 Glycerophospholipid metabolism SBML MML
tbd00620 Pyruvate metabolism SBML MML
tbd00622 Toluene and xylene degradation SBML MML
tbd00624 1- and 2-Methylnaphthalene degradation SBML MML
tbd00626 Naphthalene and anthracene degradation SBML MML
tbd00627 1,4-Dichlorobenzene degradation SBML MML
tbd00630 Glyoxylate and dicarboxylate metabolism SBML MML
tbd00632 (Undocumented) SBML MML
tbd00640 Propanoate metabolism SBML MML
tbd00641 3-Chloroacrylic acid degradation SBML MML
tbd00650 Butanoate metabolism SBML MML
tbd00660 C5-Branched dibasic acid metabolism SBML MML
tbd00670 One carbon pool by folate SBML MML
tbd00680 Methane metabolism SBML MML
tbd00710 (Undocumented) SBML MML
tbd00720 (Undocumented) SBML MML
tbd00730 Thiamine metabolism SBML MML
tbd00740 Riboflavin metabolism SBML MML
tbd00750 Vitamin B6 metabolism SBML MML
tbd00760 Nicotinate and nicotinamide metabolism SBML MML
tbd00770 Pantothenate and CoA biosynthesis SBML MML
tbd00780 Biotin metabolism SBML MML
tbd00785 Lipoic acid metabolism SBML MML
tbd00790 Folate biosynthesis SBML MML
tbd00860 Porphyrin and chlorophyll metabolism SBML MML
tbd00900 Terpenoid backbone biosynthesis SBML MML
tbd00903 (Undocumented) SBML MML
tbd00910 Nitrogen metabolism SBML MML
tbd00920 Sulfur metabolism SBML MML
tbd00970 Aminoacyl-tRNA biosynthesis SBML MML
tbd00982 (Undocumented) SBML MML
tbd00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.