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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism syx: Synechococcus sp. WH7803

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
syx00010 Glycolysis / Gluconeogenesis SBML MML
syx00020 Citrate cycle (TCA cycle) SBML MML
syx00030 Pentose phosphate pathway SBML MML
syx00040 Pentose and glucuronate interconversions SBML MML
syx00051 Fructose and mannose metabolism SBML MML
syx00052 Galactose metabolism SBML MML
syx00053 Ascorbate and aldarate metabolism SBML MML
syx00061 Fatty acid biosynthesis SBML MML
syx00071 Fatty acid metabolism SBML MML
syx00100 (Undocumented) SBML MML
syx00120 (Undocumented) SBML MML
syx00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
syx00220 (Undocumented) SBML MML
syx00230 Purine metabolism SBML MML
syx00240 Pyrimidine metabolism SBML MML
syx00251 (Undocumented) SBML MML
syx00252 (Undocumented) SBML MML
syx00260 Glycine, serine and threonine metabolism SBML MML
syx00271 (Undocumented) SBML MML
syx00272 (Undocumented) SBML MML
syx00280 Valine, leucine and isoleucine degradation SBML MML
syx00290 Valine, leucine and isoleucine biosynthesis SBML MML
syx00300 Lysine biosynthesis SBML MML
syx00310 Lysine degradation SBML MML
syx00330 Arginine and proline metabolism SBML MML
syx00340 Histidine metabolism SBML MML
syx00350 Tyrosine metabolism SBML MML
syx00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
syx00360 Phenylalanine metabolism SBML MML
syx00361 gamma-Hexachlorocyclohexane degradation SBML MML
syx00364 Fluorobenzoate degradation SBML MML
syx00380 Tryptophan metabolism SBML MML
syx00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
syx00401 Novobiocin biosynthesis SBML MML
syx00410 beta-Alanine metabolism SBML MML
syx00430 Taurine and hypotaurine metabolism SBML MML
syx00450 Selenoamino acid metabolism SBML MML
syx00460 (Undocumented) SBML MML
syx00471 D-Glutamine and D-glutamate metabolism SBML MML
syx00473 D-Alanine metabolism SBML MML
syx00480 Glutathione metabolism SBML MML
syx00500 Starch and sucrose metabolism SBML MML
syx00510 (Undocumented) SBML MML
syx00520 Amino sugar and nucleotide sugar metabolism SBML MML
syx00521 Streptomycin biosynthesis SBML MML
syx00523 Polyketide sugar unit biosynthesis SBML MML
syx00530 (Undocumented) SBML MML
syx00540 Lipopolysaccharide biosynthesis SBML MML
syx00550 Peptidoglycan biosynthesis SBML MML
syx00561 Glycerolipid metabolism SBML MML
syx00562 Inositol phosphate metabolism SBML MML
syx00564 Glycerophospholipid metabolism SBML MML
syx00590 Arachidonic acid metabolism SBML MML
syx00620 Pyruvate metabolism SBML MML
syx00626 Naphthalene and anthracene degradation SBML MML
syx00627 1,4-Dichlorobenzene degradation SBML MML
syx00630 Glyoxylate and dicarboxylate metabolism SBML MML
syx00632 (Undocumented) SBML MML
syx00640 Propanoate metabolism SBML MML
syx00641 3-Chloroacrylic acid degradation SBML MML
syx00650 Butanoate metabolism SBML MML
syx00670 One carbon pool by folate SBML MML
syx00680 Methane metabolism SBML MML
syx00710 (Undocumented) SBML MML
syx00720 (Undocumented) SBML MML
syx00730 Thiamine metabolism SBML MML
syx00740 Riboflavin metabolism SBML MML
syx00750 Vitamin B6 metabolism SBML MML
syx00760 Nicotinate and nicotinamide metabolism SBML MML
syx00770 Pantothenate and CoA biosynthesis SBML MML
syx00780 Biotin metabolism SBML MML
syx00785 Lipoic acid metabolism SBML MML
syx00790 Folate biosynthesis SBML MML
syx00791 Atrazine degradation SBML MML
syx00860 Porphyrin and chlorophyll metabolism SBML MML
syx00900 Terpenoid backbone biosynthesis SBML MML
syx00903 (Undocumented) SBML MML
syx00906 Carotenoid biosynthesis SBML MML
syx00910 Nitrogen metabolism SBML MML
syx00920 Sulfur metabolism SBML MML
syx00940 (Undocumented) SBML MML
syx00941 (Undocumented) SBML MML
syx00950 (Undocumented) SBML MML
syx00970 Aminoacyl-tRNA biosynthesis SBML MML
syx00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
syx00982 (Undocumented) SBML MML
syx00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.