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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism syn: Synechocystis sp. PCC6803

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
syn00010 Glycolysis / Gluconeogenesis SBML MML
syn00020 Citrate cycle (TCA cycle) SBML MML
syn00030 Pentose phosphate pathway SBML MML
syn00040 Pentose and glucuronate interconversions SBML MML
syn00051 Fructose and mannose metabolism SBML MML
syn00052 Galactose metabolism SBML MML
syn00053 Ascorbate and aldarate metabolism SBML MML
syn00061 Fatty acid biosynthesis SBML MML
syn00071 Fatty acid metabolism SBML MML
syn00100 (Undocumented) SBML MML
syn00120 (Undocumented) SBML MML
syn00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
syn00220 (Undocumented) SBML MML
syn00230 Purine metabolism SBML MML
syn00240 Pyrimidine metabolism SBML MML
syn00251 (Undocumented) SBML MML
syn00252 (Undocumented) SBML MML
syn00260 Glycine, serine and threonine metabolism SBML MML
syn00271 (Undocumented) SBML MML
syn00272 (Undocumented) SBML MML
syn00280 Valine, leucine and isoleucine degradation SBML MML
syn00290 Valine, leucine and isoleucine biosynthesis SBML MML
syn00300 Lysine biosynthesis SBML MML
syn00310 Lysine degradation SBML MML
syn00311 Penicillin and cephalosporin biosynthesis SBML MML
syn00330 Arginine and proline metabolism SBML MML
syn00340 Histidine metabolism SBML MML
syn00350 Tyrosine metabolism SBML MML
syn00360 Phenylalanine metabolism SBML MML
syn00361 gamma-Hexachlorocyclohexane degradation SBML MML
syn00364 Fluorobenzoate degradation SBML MML
syn00380 Tryptophan metabolism SBML MML
syn00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
syn00401 Novobiocin biosynthesis SBML MML
syn00410 beta-Alanine metabolism SBML MML
syn00430 Taurine and hypotaurine metabolism SBML MML
syn00440 Phosphonate and phosphinate metabolism SBML MML
syn00450 Selenoamino acid metabolism SBML MML
syn00460 (Undocumented) SBML MML
syn00471 D-Glutamine and D-glutamate metabolism SBML MML
syn00473 D-Alanine metabolism SBML MML
syn00480 Glutathione metabolism SBML MML
syn00500 Starch and sucrose metabolism SBML MML
syn00520 Amino sugar and nucleotide sugar metabolism SBML MML
syn00521 Streptomycin biosynthesis SBML MML
syn00523 Polyketide sugar unit biosynthesis SBML MML
syn00530 (Undocumented) SBML MML
syn00540 Lipopolysaccharide biosynthesis SBML MML
syn00550 Peptidoglycan biosynthesis SBML MML
syn00561 Glycerolipid metabolism SBML MML
syn00562 Inositol phosphate metabolism SBML MML
syn00564 Glycerophospholipid metabolism SBML MML
syn00590 Arachidonic acid metabolism SBML MML
syn00620 Pyruvate metabolism SBML MML
syn00624 1- and 2-Methylnaphthalene degradation SBML MML
syn00626 Naphthalene and anthracene degradation SBML MML
syn00627 1,4-Dichlorobenzene degradation SBML MML
syn00630 Glyoxylate and dicarboxylate metabolism SBML MML
syn00632 (Undocumented) SBML MML
syn00640 Propanoate metabolism SBML MML
syn00641 3-Chloroacrylic acid degradation SBML MML
syn00643 Styrene degradation SBML MML
syn00650 Butanoate metabolism SBML MML
syn00660 C5-Branched dibasic acid metabolism SBML MML
syn00670 One carbon pool by folate SBML MML
syn00680 Methane metabolism SBML MML
syn00710 (Undocumented) SBML MML
syn00720 (Undocumented) SBML MML
syn00730 Thiamine metabolism SBML MML
syn00740 Riboflavin metabolism SBML MML
syn00750 Vitamin B6 metabolism SBML MML
syn00760 Nicotinate and nicotinamide metabolism SBML MML
syn00770 Pantothenate and CoA biosynthesis SBML MML
syn00780 Biotin metabolism SBML MML
syn00785 Lipoic acid metabolism SBML MML
syn00790 Folate biosynthesis SBML MML
syn00860 Porphyrin and chlorophyll metabolism SBML MML
syn00900 Terpenoid backbone biosynthesis SBML MML
syn00903 (Undocumented) SBML MML
syn00906 Carotenoid biosynthesis SBML MML
syn00910 Nitrogen metabolism SBML MML
syn00920 Sulfur metabolism SBML MML
syn00940 (Undocumented) SBML MML
syn00941 (Undocumented) SBML MML
syn00950 (Undocumented) SBML MML
syn00970 Aminoacyl-tRNA biosynthesis SBML MML
syn00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
syn00982 (Undocumented) SBML MML
syn00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.