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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism syg: Synechococcus sp. CC9311

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
syg00010 Glycolysis / Gluconeogenesis SBML MML
syg00020 Citrate cycle (TCA cycle) SBML MML
syg00030 Pentose phosphate pathway SBML MML
syg00040 Pentose and glucuronate interconversions SBML MML
syg00051 Fructose and mannose metabolism SBML MML
syg00052 Galactose metabolism SBML MML
syg00053 Ascorbate and aldarate metabolism SBML MML
syg00061 Fatty acid biosynthesis SBML MML
syg00071 Fatty acid metabolism SBML MML
syg00100 (Undocumented) SBML MML
syg00120 (Undocumented) SBML MML
syg00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
syg00220 (Undocumented) SBML MML
syg00230 Purine metabolism SBML MML
syg00240 Pyrimidine metabolism SBML MML
syg00251 (Undocumented) SBML MML
syg00252 (Undocumented) SBML MML
syg00260 Glycine, serine and threonine metabolism SBML MML
syg00271 (Undocumented) SBML MML
syg00272 (Undocumented) SBML MML
syg00280 Valine, leucine and isoleucine degradation SBML MML
syg00281 Geraniol degradation SBML MML
syg00290 Valine, leucine and isoleucine biosynthesis SBML MML
syg00300 Lysine biosynthesis SBML MML
syg00310 Lysine degradation SBML MML
syg00330 Arginine and proline metabolism SBML MML
syg00340 Histidine metabolism SBML MML
syg00350 Tyrosine metabolism SBML MML
syg00360 Phenylalanine metabolism SBML MML
syg00361 gamma-Hexachlorocyclohexane degradation SBML MML
syg00364 Fluorobenzoate degradation SBML MML
syg00380 Tryptophan metabolism SBML MML
syg00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
syg00401 Novobiocin biosynthesis SBML MML
syg00410 beta-Alanine metabolism SBML MML
syg00430 Taurine and hypotaurine metabolism SBML MML
syg00440 Phosphonate and phosphinate metabolism SBML MML
syg00450 Selenoamino acid metabolism SBML MML
syg00460 (Undocumented) SBML MML
syg00471 D-Glutamine and D-glutamate metabolism SBML MML
syg00473 D-Alanine metabolism SBML MML
syg00480 Glutathione metabolism SBML MML
syg00500 Starch and sucrose metabolism SBML MML
syg00520 Amino sugar and nucleotide sugar metabolism SBML MML
syg00521 Streptomycin biosynthesis SBML MML
syg00530 (Undocumented) SBML MML
syg00540 Lipopolysaccharide biosynthesis SBML MML
syg00550 Peptidoglycan biosynthesis SBML MML
syg00561 Glycerolipid metabolism SBML MML
syg00562 Inositol phosphate metabolism SBML MML
syg00564 Glycerophospholipid metabolism SBML MML
syg00590 Arachidonic acid metabolism SBML MML
syg00620 Pyruvate metabolism SBML MML
syg00624 1- and 2-Methylnaphthalene degradation SBML MML
syg00626 Naphthalene and anthracene degradation SBML MML
syg00627 1,4-Dichlorobenzene degradation SBML MML
syg00630 Glyoxylate and dicarboxylate metabolism SBML MML
syg00632 (Undocumented) SBML MML
syg00640 Propanoate metabolism SBML MML
syg00641 3-Chloroacrylic acid degradation SBML MML
syg00650 Butanoate metabolism SBML MML
syg00660 C5-Branched dibasic acid metabolism SBML MML
syg00670 One carbon pool by folate SBML MML
syg00680 Methane metabolism SBML MML
syg00710 (Undocumented) SBML MML
syg00720 (Undocumented) SBML MML
syg00730 Thiamine metabolism SBML MML
syg00740 Riboflavin metabolism SBML MML
syg00750 Vitamin B6 metabolism SBML MML
syg00760 Nicotinate and nicotinamide metabolism SBML MML
syg00770 Pantothenate and CoA biosynthesis SBML MML
syg00780 Biotin metabolism SBML MML
syg00785 Lipoic acid metabolism SBML MML
syg00790 Folate biosynthesis SBML MML
syg00860 Porphyrin and chlorophyll metabolism SBML MML
syg00900 Terpenoid backbone biosynthesis SBML MML
syg00903 (Undocumented) SBML MML
syg00906 Carotenoid biosynthesis SBML MML
syg00910 Nitrogen metabolism SBML MML
syg00920 Sulfur metabolism SBML MML
syg00930 Caprolactam degradation SBML MML
syg00941 (Undocumented) SBML MML
syg00960 (Undocumented) SBML MML
syg00970 Aminoacyl-tRNA biosynthesis SBML MML
syg00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
syg00982 (Undocumented) SBML MML
syg00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.