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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism syc: Synechococcus elongatus PCC6301

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
syc00010 Glycolysis / Gluconeogenesis SBML MML
syc00020 Citrate cycle (TCA cycle) SBML MML
syc00030 Pentose phosphate pathway SBML MML
syc00040 Pentose and glucuronate interconversions SBML MML
syc00051 Fructose and mannose metabolism SBML MML
syc00052 Galactose metabolism SBML MML
syc00053 Ascorbate and aldarate metabolism SBML MML
syc00061 Fatty acid biosynthesis SBML MML
syc00071 Fatty acid metabolism SBML MML
syc00100 (Undocumented) SBML MML
syc00120 (Undocumented) SBML MML
syc00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
syc00220 (Undocumented) SBML MML
syc00230 Purine metabolism SBML MML
syc00240 Pyrimidine metabolism SBML MML
syc00251 (Undocumented) SBML MML
syc00252 (Undocumented) SBML MML
syc00260 Glycine, serine and threonine metabolism SBML MML
syc00271 (Undocumented) SBML MML
syc00272 (Undocumented) SBML MML
syc00280 Valine, leucine and isoleucine degradation SBML MML
syc00290 Valine, leucine and isoleucine biosynthesis SBML MML
syc00300 Lysine biosynthesis SBML MML
syc00310 Lysine degradation SBML MML
syc00330 Arginine and proline metabolism SBML MML
syc00340 Histidine metabolism SBML MML
syc00350 Tyrosine metabolism SBML MML
syc00361 gamma-Hexachlorocyclohexane degradation SBML MML
syc00364 Fluorobenzoate degradation SBML MML
syc00380 Tryptophan metabolism SBML MML
syc00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
syc00401 Novobiocin biosynthesis SBML MML
syc00410 beta-Alanine metabolism SBML MML
syc00430 Taurine and hypotaurine metabolism SBML MML
syc00450 Selenoamino acid metabolism SBML MML
syc00460 (Undocumented) SBML MML
syc00471 D-Glutamine and D-glutamate metabolism SBML MML
syc00473 D-Alanine metabolism SBML MML
syc00480 Glutathione metabolism SBML MML
syc00500 Starch and sucrose metabolism SBML MML
syc00520 Amino sugar and nucleotide sugar metabolism SBML MML
syc00521 Streptomycin biosynthesis SBML MML
syc00523 Polyketide sugar unit biosynthesis SBML MML
syc00530 (Undocumented) SBML MML
syc00540 Lipopolysaccharide biosynthesis SBML MML
syc00550 Peptidoglycan biosynthesis SBML MML
syc00561 Glycerolipid metabolism SBML MML
syc00562 Inositol phosphate metabolism SBML MML
syc00564 Glycerophospholipid metabolism SBML MML
syc00590 Arachidonic acid metabolism SBML MML
syc00620 Pyruvate metabolism SBML MML
syc00624 1- and 2-Methylnaphthalene degradation SBML MML
syc00626 Naphthalene and anthracene degradation SBML MML
syc00627 1,4-Dichlorobenzene degradation SBML MML
syc00630 Glyoxylate and dicarboxylate metabolism SBML MML
syc00633 Trinitrotoluene degradation SBML MML
syc00640 Propanoate metabolism SBML MML
syc00641 3-Chloroacrylic acid degradation SBML MML
syc00650 Butanoate metabolism SBML MML
syc00670 One carbon pool by folate SBML MML
syc00680 Methane metabolism SBML MML
syc00710 (Undocumented) SBML MML
syc00720 (Undocumented) SBML MML
syc00730 Thiamine metabolism SBML MML
syc00740 Riboflavin metabolism SBML MML
syc00750 Vitamin B6 metabolism SBML MML
syc00760 Nicotinate and nicotinamide metabolism SBML MML
syc00770 Pantothenate and CoA biosynthesis SBML MML
syc00780 Biotin metabolism SBML MML
syc00785 Lipoic acid metabolism SBML MML
syc00790 Folate biosynthesis SBML MML
syc00860 Porphyrin and chlorophyll metabolism SBML MML
syc00900 Terpenoid backbone biosynthesis SBML MML
syc00903 (Undocumented) SBML MML
syc00906 Carotenoid biosynthesis SBML MML
syc00910 Nitrogen metabolism SBML MML
syc00920 Sulfur metabolism SBML MML
syc00940 (Undocumented) SBML MML
syc00970 Aminoacyl-tRNA biosynthesis SBML MML
syc00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
syc00982 (Undocumented) SBML MML
syc00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.