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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sty: Salmonella enterica subsp. enterica serovar Typhi CT18

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sty00010 Glycolysis / Gluconeogenesis SBML MML
sty00020 Citrate cycle (TCA cycle) SBML MML
sty00030 Pentose phosphate pathway SBML MML
sty00040 Pentose and glucuronate interconversions SBML MML
sty00051 Fructose and mannose metabolism SBML MML
sty00052 Galactose metabolism SBML MML
sty00053 Ascorbate and aldarate metabolism SBML MML
sty00061 Fatty acid biosynthesis SBML MML
sty00062 Fatty acid elongation in mitochondria SBML MML
sty00071 Fatty acid metabolism SBML MML
sty00100 (Undocumented) SBML MML
sty00120 (Undocumented) SBML MML
sty00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sty00220 (Undocumented) SBML MML
sty00230 Purine metabolism SBML MML
sty00240 Pyrimidine metabolism SBML MML
sty00251 (Undocumented) SBML MML
sty00252 (Undocumented) SBML MML
sty00260 Glycine, serine and threonine metabolism SBML MML
sty00271 (Undocumented) SBML MML
sty00272 (Undocumented) SBML MML
sty00280 Valine, leucine and isoleucine degradation SBML MML
sty00281 Geraniol degradation SBML MML
sty00290 Valine, leucine and isoleucine biosynthesis SBML MML
sty00300 Lysine biosynthesis SBML MML
sty00310 Lysine degradation SBML MML
sty00330 Arginine and proline metabolism SBML MML
sty00340 Histidine metabolism SBML MML
sty00350 Tyrosine metabolism SBML MML
sty00360 Phenylalanine metabolism SBML MML
sty00361 gamma-Hexachlorocyclohexane degradation SBML MML
sty00362 (Undocumented) SBML MML
sty00364 Fluorobenzoate degradation SBML MML
sty00380 Tryptophan metabolism SBML MML
sty00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sty00401 Novobiocin biosynthesis SBML MML
sty00410 beta-Alanine metabolism SBML MML
sty00430 Taurine and hypotaurine metabolism SBML MML
sty00440 Phosphonate and phosphinate metabolism SBML MML
sty00450 Selenoamino acid metabolism SBML MML
sty00460 (Undocumented) SBML MML
sty00471 D-Glutamine and D-glutamate metabolism SBML MML
sty00473 D-Alanine metabolism SBML MML
sty00480 Glutathione metabolism SBML MML
sty00500 Starch and sucrose metabolism SBML MML
sty00520 Amino sugar and nucleotide sugar metabolism SBML MML
sty00521 Streptomycin biosynthesis SBML MML
sty00523 Polyketide sugar unit biosynthesis SBML MML
sty00530 (Undocumented) SBML MML
sty00540 Lipopolysaccharide biosynthesis SBML MML
sty00550 Peptidoglycan biosynthesis SBML MML
sty00561 Glycerolipid metabolism SBML MML
sty00562 Inositol phosphate metabolism SBML MML
sty00564 Glycerophospholipid metabolism SBML MML
sty00590 Arachidonic acid metabolism SBML MML
sty00592 alpha-Linolenic acid metabolism SBML MML
sty00620 Pyruvate metabolism SBML MML
sty00624 1- and 2-Methylnaphthalene degradation SBML MML
sty00626 Naphthalene and anthracene degradation SBML MML
sty00627 1,4-Dichlorobenzene degradation SBML MML
sty00630 Glyoxylate and dicarboxylate metabolism SBML MML
sty00632 (Undocumented) SBML MML
sty00633 Trinitrotoluene degradation SBML MML
sty00640 Propanoate metabolism SBML MML
sty00641 3-Chloroacrylic acid degradation SBML MML
sty00650 Butanoate metabolism SBML MML
sty00660 C5-Branched dibasic acid metabolism SBML MML
sty00670 One carbon pool by folate SBML MML
sty00680 Methane metabolism SBML MML
sty00710 (Undocumented) SBML MML
sty00720 (Undocumented) SBML MML
sty00730 Thiamine metabolism SBML MML
sty00740 Riboflavin metabolism SBML MML
sty00750 Vitamin B6 metabolism SBML MML
sty00760 Nicotinate and nicotinamide metabolism SBML MML
sty00770 Pantothenate and CoA biosynthesis SBML MML
sty00780 Biotin metabolism SBML MML
sty00785 Lipoic acid metabolism SBML MML
sty00790 Folate biosynthesis SBML MML
sty00791 Atrazine degradation SBML MML
sty00860 Porphyrin and chlorophyll metabolism SBML MML
sty00900 Terpenoid backbone biosynthesis SBML MML
sty00903 (Undocumented) SBML MML
sty00910 Nitrogen metabolism SBML MML
sty00920 Sulfur metabolism SBML MML
sty00930 Caprolactam degradation SBML MML
sty00950 (Undocumented) SBML MML
sty00960 (Undocumented) SBML MML
sty00970 Aminoacyl-tRNA biosynthesis SBML MML
sty00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
sty00982 (Undocumented) SBML MML
sty00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.