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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism stt: Salmonella enterica subsp. enterica serovar Typhi Ty2

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
stt00010 Glycolysis / Gluconeogenesis SBML MML
stt00020 Citrate cycle (TCA cycle) SBML MML
stt00030 Pentose phosphate pathway SBML MML
stt00040 Pentose and glucuronate interconversions SBML MML
stt00051 Fructose and mannose metabolism SBML MML
stt00052 Galactose metabolism SBML MML
stt00053 Ascorbate and aldarate metabolism SBML MML
stt00061 Fatty acid biosynthesis SBML MML
stt00062 Fatty acid elongation in mitochondria SBML MML
stt00071 Fatty acid metabolism SBML MML
stt00100 (Undocumented) SBML MML
stt00120 (Undocumented) SBML MML
stt00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
stt00220 (Undocumented) SBML MML
stt00230 Purine metabolism SBML MML
stt00240 Pyrimidine metabolism SBML MML
stt00251 (Undocumented) SBML MML
stt00252 (Undocumented) SBML MML
stt00260 Glycine, serine and threonine metabolism SBML MML
stt00271 (Undocumented) SBML MML
stt00272 (Undocumented) SBML MML
stt00280 Valine, leucine and isoleucine degradation SBML MML
stt00281 Geraniol degradation SBML MML
stt00290 Valine, leucine and isoleucine biosynthesis SBML MML
stt00300 Lysine biosynthesis SBML MML
stt00310 Lysine degradation SBML MML
stt00330 Arginine and proline metabolism SBML MML
stt00340 Histidine metabolism SBML MML
stt00350 Tyrosine metabolism SBML MML
stt00360 Phenylalanine metabolism SBML MML
stt00361 gamma-Hexachlorocyclohexane degradation SBML MML
stt00362 (Undocumented) SBML MML
stt00364 Fluorobenzoate degradation SBML MML
stt00380 Tryptophan metabolism SBML MML
stt00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
stt00401 Novobiocin biosynthesis SBML MML
stt00410 beta-Alanine metabolism SBML MML
stt00430 Taurine and hypotaurine metabolism SBML MML
stt00440 Phosphonate and phosphinate metabolism SBML MML
stt00450 Selenoamino acid metabolism SBML MML
stt00460 (Undocumented) SBML MML
stt00471 D-Glutamine and D-glutamate metabolism SBML MML
stt00473 D-Alanine metabolism SBML MML
stt00480 Glutathione metabolism SBML MML
stt00500 Starch and sucrose metabolism SBML MML
stt00520 Amino sugar and nucleotide sugar metabolism SBML MML
stt00521 Streptomycin biosynthesis SBML MML
stt00523 Polyketide sugar unit biosynthesis SBML MML
stt00530 (Undocumented) SBML MML
stt00540 Lipopolysaccharide biosynthesis SBML MML
stt00550 Peptidoglycan biosynthesis SBML MML
stt00561 Glycerolipid metabolism SBML MML
stt00562 Inositol phosphate metabolism SBML MML
stt00564 Glycerophospholipid metabolism SBML MML
stt00590 Arachidonic acid metabolism SBML MML
stt00592 alpha-Linolenic acid metabolism SBML MML
stt00620 Pyruvate metabolism SBML MML
stt00624 1- and 2-Methylnaphthalene degradation SBML MML
stt00626 Naphthalene and anthracene degradation SBML MML
stt00627 1,4-Dichlorobenzene degradation SBML MML
stt00630 Glyoxylate and dicarboxylate metabolism SBML MML
stt00632 (Undocumented) SBML MML
stt00633 Trinitrotoluene degradation SBML MML
stt00640 Propanoate metabolism SBML MML
stt00641 3-Chloroacrylic acid degradation SBML MML
stt00650 Butanoate metabolism SBML MML
stt00660 C5-Branched dibasic acid metabolism SBML MML
stt00670 One carbon pool by folate SBML MML
stt00680 Methane metabolism SBML MML
stt00710 (Undocumented) SBML MML
stt00720 (Undocumented) SBML MML
stt00730 Thiamine metabolism SBML MML
stt00740 Riboflavin metabolism SBML MML
stt00750 Vitamin B6 metabolism SBML MML
stt00760 Nicotinate and nicotinamide metabolism SBML MML
stt00770 Pantothenate and CoA biosynthesis SBML MML
stt00780 Biotin metabolism SBML MML
stt00785 Lipoic acid metabolism SBML MML
stt00790 Folate biosynthesis SBML MML
stt00791 Atrazine degradation SBML MML
stt00860 Porphyrin and chlorophyll metabolism SBML MML
stt00900 Terpenoid backbone biosynthesis SBML MML
stt00903 (Undocumented) SBML MML
stt00910 Nitrogen metabolism SBML MML
stt00920 Sulfur metabolism SBML MML
stt00930 Caprolactam degradation SBML MML
stt00950 (Undocumented) SBML MML
stt00960 (Undocumented) SBML MML
stt00970 Aminoacyl-tRNA biosynthesis SBML MML
stt00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
stt00982 (Undocumented) SBML MML
stt00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.