This page will look better in a graphical browser that supports web standards, but is accessible to any browser or internet device.

Served by Samwise.

Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism stp: Salinispora tropica

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
stp00010 Glycolysis / Gluconeogenesis SBML MML
stp00020 Citrate cycle (TCA cycle) SBML MML
stp00030 Pentose phosphate pathway SBML MML
stp00031 (Undocumented) SBML MML
stp00040 Pentose and glucuronate interconversions SBML MML
stp00051 Fructose and mannose metabolism SBML MML
stp00052 Galactose metabolism SBML MML
stp00053 Ascorbate and aldarate metabolism SBML MML
stp00061 Fatty acid biosynthesis SBML MML
stp00062 Fatty acid elongation in mitochondria SBML MML
stp00071 Fatty acid metabolism SBML MML
stp00072 Synthesis and degradation of ketone bodies SBML MML
stp00100 (Undocumented) SBML MML
stp00120 (Undocumented) SBML MML
stp00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
stp00140 (Undocumented) SBML MML
stp00150 Androgen and estrogen metabolism SBML MML
stp00220 (Undocumented) SBML MML
stp00230 Purine metabolism SBML MML
stp00240 Pyrimidine metabolism SBML MML
stp00251 (Undocumented) SBML MML
stp00252 (Undocumented) SBML MML
stp00260 Glycine, serine and threonine metabolism SBML MML
stp00271 (Undocumented) SBML MML
stp00272 (Undocumented) SBML MML
stp00280 Valine, leucine and isoleucine degradation SBML MML
stp00281 Geraniol degradation SBML MML
stp00290 Valine, leucine and isoleucine biosynthesis SBML MML
stp00300 Lysine biosynthesis SBML MML
stp00310 Lysine degradation SBML MML
stp00311 Penicillin and cephalosporin biosynthesis SBML MML
stp00330 Arginine and proline metabolism SBML MML
stp00340 Histidine metabolism SBML MML
stp00350 Tyrosine metabolism SBML MML
stp00351 1,1,1-Trichloro-2,2-bis(4-chlorophenyl)ethane (DDT) degradation SBML MML
stp00360 Phenylalanine metabolism SBML MML
stp00361 gamma-Hexachlorocyclohexane degradation SBML MML
stp00362 (Undocumented) SBML MML
stp00363 Bisphenol A degradation SBML MML
stp00364 Fluorobenzoate degradation SBML MML
stp00380 Tryptophan metabolism SBML MML
stp00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
stp00401 Novobiocin biosynthesis SBML MML
stp00410 beta-Alanine metabolism SBML MML
stp00430 Taurine and hypotaurine metabolism SBML MML
stp00450 Selenoamino acid metabolism SBML MML
stp00460 (Undocumented) SBML MML
stp00471 D-Glutamine and D-glutamate metabolism SBML MML
stp00473 D-Alanine metabolism SBML MML
stp00480 Glutathione metabolism SBML MML
stp00500 Starch and sucrose metabolism SBML MML
stp00510 (Undocumented) SBML MML
stp00520 Amino sugar and nucleotide sugar metabolism SBML MML
stp00521 Streptomycin biosynthesis SBML MML
stp00523 Polyketide sugar unit biosynthesis SBML MML
stp00530 (Undocumented) SBML MML
stp00550 Peptidoglycan biosynthesis SBML MML
stp00561 Glycerolipid metabolism SBML MML
stp00562 Inositol phosphate metabolism SBML MML
stp00564 Glycerophospholipid metabolism SBML MML
stp00565 Ether lipid metabolism SBML MML
stp00592 alpha-Linolenic acid metabolism SBML MML
stp00620 Pyruvate metabolism SBML MML
stp00621 (Undocumented) SBML MML
stp00622 Toluene and xylene degradation SBML MML
stp00624 1- and 2-Methylnaphthalene degradation SBML MML
stp00626 Naphthalene and anthracene degradation SBML MML
stp00627 1,4-Dichlorobenzene degradation SBML MML
stp00628 Fluorene degradation SBML MML
stp00629 Carbazole degradation SBML MML
stp00630 Glyoxylate and dicarboxylate metabolism SBML MML
stp00631 1,2-Dichloroethane degradation SBML MML
stp00632 (Undocumented) SBML MML
stp00640 Propanoate metabolism SBML MML
stp00641 3-Chloroacrylic acid degradation SBML MML
stp00642 Ethylbenzene degradation SBML MML
stp00643 Styrene degradation SBML MML
stp00650 Butanoate metabolism SBML MML
stp00660 C5-Branched dibasic acid metabolism SBML MML
stp00670 One carbon pool by folate SBML MML
stp00680 Methane metabolism SBML MML
stp00710 (Undocumented) SBML MML
stp00720 (Undocumented) SBML MML
stp00730 Thiamine metabolism SBML MML
stp00740 Riboflavin metabolism SBML MML
stp00750 Vitamin B6 metabolism SBML MML
stp00760 Nicotinate and nicotinamide metabolism SBML MML
stp00770 Pantothenate and CoA biosynthesis SBML MML
stp00780 Biotin metabolism SBML MML
stp00785 Lipoic acid metabolism SBML MML
stp00790 Folate biosynthesis SBML MML
stp00791 Atrazine degradation SBML MML
stp00860 Porphyrin and chlorophyll metabolism SBML MML
stp00900 Terpenoid backbone biosynthesis SBML MML
stp00903 (Undocumented) SBML MML
stp00906 Carotenoid biosynthesis SBML MML
stp00910 Nitrogen metabolism SBML MML
stp00920 Sulfur metabolism SBML MML
stp00930 Caprolactam degradation SBML MML
stp00940 (Undocumented) SBML MML
stp00941 (Undocumented) SBML MML
stp00950 (Undocumented) SBML MML
stp00960 (Undocumented) SBML MML
stp00970 Aminoacyl-tRNA biosynthesis SBML MML
stp00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
stp00982 (Undocumented) SBML MML
stp00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.