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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism ste: Streptococcus thermophilus LMD-9

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
ste00010 Glycolysis / Gluconeogenesis SBML MML
ste00020 Citrate cycle (TCA cycle) SBML MML
ste00030 Pentose phosphate pathway SBML MML
ste00040 Pentose and glucuronate interconversions SBML MML
ste00051 Fructose and mannose metabolism SBML MML
ste00052 Galactose metabolism SBML MML
ste00061 Fatty acid biosynthesis SBML MML
ste00071 Fatty acid metabolism SBML MML
ste00100 (Undocumented) SBML MML
ste00220 (Undocumented) SBML MML
ste00230 Purine metabolism SBML MML
ste00240 Pyrimidine metabolism SBML MML
ste00251 (Undocumented) SBML MML
ste00252 (Undocumented) SBML MML
ste00260 Glycine, serine and threonine metabolism SBML MML
ste00271 (Undocumented) SBML MML
ste00272 (Undocumented) SBML MML
ste00280 Valine, leucine and isoleucine degradation SBML MML
ste00290 Valine, leucine and isoleucine biosynthesis SBML MML
ste00300 Lysine biosynthesis SBML MML
ste00330 Arginine and proline metabolism SBML MML
ste00340 Histidine metabolism SBML MML
ste00350 Tyrosine metabolism SBML MML
ste00360 Phenylalanine metabolism SBML MML
ste00380 Tryptophan metabolism SBML MML
ste00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
ste00401 Novobiocin biosynthesis SBML MML
ste00430 Taurine and hypotaurine metabolism SBML MML
ste00440 Phosphonate and phosphinate metabolism SBML MML
ste00450 Selenoamino acid metabolism SBML MML
ste00460 (Undocumented) SBML MML
ste00471 D-Glutamine and D-glutamate metabolism SBML MML
ste00473 D-Alanine metabolism SBML MML
ste00480 Glutathione metabolism SBML MML
ste00500 Starch and sucrose metabolism SBML MML
ste00520 Amino sugar and nucleotide sugar metabolism SBML MML
ste00521 Streptomycin biosynthesis SBML MML
ste00523 Polyketide sugar unit biosynthesis SBML MML
ste00530 (Undocumented) SBML MML
ste00550 Peptidoglycan biosynthesis SBML MML
ste00561 Glycerolipid metabolism SBML MML
ste00562 Inositol phosphate metabolism SBML MML
ste00564 Glycerophospholipid metabolism SBML MML
ste00620 Pyruvate metabolism SBML MML
ste00624 1- and 2-Methylnaphthalene degradation SBML MML
ste00630 Glyoxylate and dicarboxylate metabolism SBML MML
ste00632 (Undocumented) SBML MML
ste00640 Propanoate metabolism SBML MML
ste00641 3-Chloroacrylic acid degradation SBML MML
ste00650 Butanoate metabolism SBML MML
ste00660 C5-Branched dibasic acid metabolism SBML MML
ste00670 One carbon pool by folate SBML MML
ste00680 Methane metabolism SBML MML
ste00710 (Undocumented) SBML MML
ste00720 (Undocumented) SBML MML
ste00730 Thiamine metabolism SBML MML
ste00740 Riboflavin metabolism SBML MML
ste00750 Vitamin B6 metabolism SBML MML
ste00760 Nicotinate and nicotinamide metabolism SBML MML
ste00770 Pantothenate and CoA biosynthesis SBML MML
ste00780 Biotin metabolism SBML MML
ste00785 Lipoic acid metabolism SBML MML
ste00790 Folate biosynthesis SBML MML
ste00860 Porphyrin and chlorophyll metabolism SBML MML
ste00900 Terpenoid backbone biosynthesis SBML MML
ste00903 (Undocumented) SBML MML
ste00910 Nitrogen metabolism SBML MML
ste00920 Sulfur metabolism SBML MML
ste00970 Aminoacyl-tRNA biosynthesis SBML MML
ste00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
ste00982 (Undocumented) SBML MML
ste00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.