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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sse: Shewanella sediminis

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sse00010 Glycolysis / Gluconeogenesis SBML MML
sse00020 Citrate cycle (TCA cycle) SBML MML
sse00030 Pentose phosphate pathway SBML MML
sse00031 (Undocumented) SBML MML
sse00040 Pentose and glucuronate interconversions SBML MML
sse00051 Fructose and mannose metabolism SBML MML
sse00052 Galactose metabolism SBML MML
sse00053 Ascorbate and aldarate metabolism SBML MML
sse00061 Fatty acid biosynthesis SBML MML
sse00062 Fatty acid elongation in mitochondria SBML MML
sse00071 Fatty acid metabolism SBML MML
sse00072 Synthesis and degradation of ketone bodies SBML MML
sse00100 (Undocumented) SBML MML
sse00120 (Undocumented) SBML MML
sse00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sse00220 (Undocumented) SBML MML
sse00230 Purine metabolism SBML MML
sse00240 Pyrimidine metabolism SBML MML
sse00251 (Undocumented) SBML MML
sse00252 (Undocumented) SBML MML
sse00260 Glycine, serine and threonine metabolism SBML MML
sse00271 (Undocumented) SBML MML
sse00272 (Undocumented) SBML MML
sse00280 Valine, leucine and isoleucine degradation SBML MML
sse00281 Geraniol degradation SBML MML
sse00290 Valine, leucine and isoleucine biosynthesis SBML MML
sse00300 Lysine biosynthesis SBML MML
sse00310 Lysine degradation SBML MML
sse00311 Penicillin and cephalosporin biosynthesis SBML MML
sse00330 Arginine and proline metabolism SBML MML
sse00340 Histidine metabolism SBML MML
sse00350 Tyrosine metabolism SBML MML
sse00360 Phenylalanine metabolism SBML MML
sse00361 gamma-Hexachlorocyclohexane degradation SBML MML
sse00362 (Undocumented) SBML MML
sse00364 Fluorobenzoate degradation SBML MML
sse00380 Tryptophan metabolism SBML MML
sse00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sse00401 Novobiocin biosynthesis SBML MML
sse00410 beta-Alanine metabolism SBML MML
sse00430 Taurine and hypotaurine metabolism SBML MML
sse00450 Selenoamino acid metabolism SBML MML
sse00460 (Undocumented) SBML MML
sse00471 D-Glutamine and D-glutamate metabolism SBML MML
sse00473 D-Alanine metabolism SBML MML
sse00480 Glutathione metabolism SBML MML
sse00500 Starch and sucrose metabolism SBML MML
sse00520 Amino sugar and nucleotide sugar metabolism SBML MML
sse00521 Streptomycin biosynthesis SBML MML
sse00523 Polyketide sugar unit biosynthesis SBML MML
sse00530 (Undocumented) SBML MML
sse00540 Lipopolysaccharide biosynthesis SBML MML
sse00550 Peptidoglycan biosynthesis SBML MML
sse00561 Glycerolipid metabolism SBML MML
sse00562 Inositol phosphate metabolism SBML MML
sse00564 Glycerophospholipid metabolism SBML MML
sse00565 Ether lipid metabolism SBML MML
sse00590 Arachidonic acid metabolism SBML MML
sse00592 alpha-Linolenic acid metabolism SBML MML
sse00600 Sphingolipid metabolism SBML MML
sse00620 Pyruvate metabolism SBML MML
sse00624 1- and 2-Methylnaphthalene degradation SBML MML
sse00626 Naphthalene and anthracene degradation SBML MML
sse00627 1,4-Dichlorobenzene degradation SBML MML
sse00630 Glyoxylate and dicarboxylate metabolism SBML MML
sse00631 1,2-Dichloroethane degradation SBML MML
sse00632 (Undocumented) SBML MML
sse00633 Trinitrotoluene degradation SBML MML
sse00640 Propanoate metabolism SBML MML
sse00641 3-Chloroacrylic acid degradation SBML MML
sse00643 Styrene degradation SBML MML
sse00650 Butanoate metabolism SBML MML
sse00660 C5-Branched dibasic acid metabolism SBML MML
sse00670 One carbon pool by folate SBML MML
sse00680 Methane metabolism SBML MML
sse00710 (Undocumented) SBML MML
sse00720 (Undocumented) SBML MML
sse00730 Thiamine metabolism SBML MML
sse00740 Riboflavin metabolism SBML MML
sse00750 Vitamin B6 metabolism SBML MML
sse00760 Nicotinate and nicotinamide metabolism SBML MML
sse00770 Pantothenate and CoA biosynthesis SBML MML
sse00780 Biotin metabolism SBML MML
sse00785 Lipoic acid metabolism SBML MML
sse00790 Folate biosynthesis SBML MML
sse00791 Atrazine degradation SBML MML
sse00860 Porphyrin and chlorophyll metabolism SBML MML
sse00900 Terpenoid backbone biosynthesis SBML MML
sse00903 (Undocumented) SBML MML
sse00910 Nitrogen metabolism SBML MML
sse00920 Sulfur metabolism SBML MML
sse00930 Caprolactam degradation SBML MML
sse00970 Aminoacyl-tRNA biosynthesis SBML MML
sse00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
sse00982 (Undocumented) SBML MML
sse00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.