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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism spt: Salmonella enterica subsp. enterica serovar Paratyphi A

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
spt00010 Glycolysis / Gluconeogenesis SBML MML
spt00020 Citrate cycle (TCA cycle) SBML MML
spt00030 Pentose phosphate pathway SBML MML
spt00040 Pentose and glucuronate interconversions SBML MML
spt00051 Fructose and mannose metabolism SBML MML
spt00052 Galactose metabolism SBML MML
spt00053 Ascorbate and aldarate metabolism SBML MML
spt00061 Fatty acid biosynthesis SBML MML
spt00062 Fatty acid elongation in mitochondria SBML MML
spt00071 Fatty acid metabolism SBML MML
spt00100 (Undocumented) SBML MML
spt00120 (Undocumented) SBML MML
spt00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
spt00220 (Undocumented) SBML MML
spt00230 Purine metabolism SBML MML
spt00240 Pyrimidine metabolism SBML MML
spt00251 (Undocumented) SBML MML
spt00252 (Undocumented) SBML MML
spt00260 Glycine, serine and threonine metabolism SBML MML
spt00271 (Undocumented) SBML MML
spt00272 (Undocumented) SBML MML
spt00280 Valine, leucine and isoleucine degradation SBML MML
spt00281 Geraniol degradation SBML MML
spt00290 Valine, leucine and isoleucine biosynthesis SBML MML
spt00300 Lysine biosynthesis SBML MML
spt00310 Lysine degradation SBML MML
spt00330 Arginine and proline metabolism SBML MML
spt00340 Histidine metabolism SBML MML
spt00350 Tyrosine metabolism SBML MML
spt00360 Phenylalanine metabolism SBML MML
spt00361 gamma-Hexachlorocyclohexane degradation SBML MML
spt00362 (Undocumented) SBML MML
spt00364 Fluorobenzoate degradation SBML MML
spt00380 Tryptophan metabolism SBML MML
spt00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
spt00401 Novobiocin biosynthesis SBML MML
spt00410 beta-Alanine metabolism SBML MML
spt00430 Taurine and hypotaurine metabolism SBML MML
spt00440 Phosphonate and phosphinate metabolism SBML MML
spt00450 Selenoamino acid metabolism SBML MML
spt00460 (Undocumented) SBML MML
spt00471 D-Glutamine and D-glutamate metabolism SBML MML
spt00473 D-Alanine metabolism SBML MML
spt00480 Glutathione metabolism SBML MML
spt00500 Starch and sucrose metabolism SBML MML
spt00520 Amino sugar and nucleotide sugar metabolism SBML MML
spt00521 Streptomycin biosynthesis SBML MML
spt00523 Polyketide sugar unit biosynthesis SBML MML
spt00530 (Undocumented) SBML MML
spt00540 Lipopolysaccharide biosynthesis SBML MML
spt00550 Peptidoglycan biosynthesis SBML MML
spt00561 Glycerolipid metabolism SBML MML
spt00562 Inositol phosphate metabolism SBML MML
spt00564 Glycerophospholipid metabolism SBML MML
spt00590 Arachidonic acid metabolism SBML MML
spt00592 alpha-Linolenic acid metabolism SBML MML
spt00620 Pyruvate metabolism SBML MML
spt00624 1- and 2-Methylnaphthalene degradation SBML MML
spt00626 Naphthalene and anthracene degradation SBML MML
spt00627 1,4-Dichlorobenzene degradation SBML MML
spt00630 Glyoxylate and dicarboxylate metabolism SBML MML
spt00632 (Undocumented) SBML MML
spt00633 Trinitrotoluene degradation SBML MML
spt00640 Propanoate metabolism SBML MML
spt00641 3-Chloroacrylic acid degradation SBML MML
spt00650 Butanoate metabolism SBML MML
spt00660 C5-Branched dibasic acid metabolism SBML MML
spt00670 One carbon pool by folate SBML MML
spt00680 Methane metabolism SBML MML
spt00710 (Undocumented) SBML MML
spt00720 (Undocumented) SBML MML
spt00730 Thiamine metabolism SBML MML
spt00740 Riboflavin metabolism SBML MML
spt00750 Vitamin B6 metabolism SBML MML
spt00760 Nicotinate and nicotinamide metabolism SBML MML
spt00770 Pantothenate and CoA biosynthesis SBML MML
spt00780 Biotin metabolism SBML MML
spt00785 Lipoic acid metabolism SBML MML
spt00790 Folate biosynthesis SBML MML
spt00791 Atrazine degradation SBML MML
spt00860 Porphyrin and chlorophyll metabolism SBML MML
spt00900 Terpenoid backbone biosynthesis SBML MML
spt00903 (Undocumented) SBML MML
spt00910 Nitrogen metabolism SBML MML
spt00920 Sulfur metabolism SBML MML
spt00930 Caprolactam degradation SBML MML
spt00950 (Undocumented) SBML MML
spt00960 (Undocumented) SBML MML
spt00970 Aminoacyl-tRNA biosynthesis SBML MML
spt00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
spt00982 (Undocumented) SBML MML
spt00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.