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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism smu: Streptococcus mutans

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
smu00010 Glycolysis / Gluconeogenesis SBML MML
smu00020 Citrate cycle (TCA cycle) SBML MML
smu00030 Pentose phosphate pathway SBML MML
smu00040 Pentose and glucuronate interconversions SBML MML
smu00051 Fructose and mannose metabolism SBML MML
smu00052 Galactose metabolism SBML MML
smu00053 Ascorbate and aldarate metabolism SBML MML
smu00061 Fatty acid biosynthesis SBML MML
smu00071 Fatty acid metabolism SBML MML
smu00100 (Undocumented) SBML MML
smu00220 (Undocumented) SBML MML
smu00230 Purine metabolism SBML MML
smu00240 Pyrimidine metabolism SBML MML
smu00251 (Undocumented) SBML MML
smu00252 (Undocumented) SBML MML
smu00260 Glycine, serine and threonine metabolism SBML MML
smu00271 (Undocumented) SBML MML
smu00272 (Undocumented) SBML MML
smu00280 Valine, leucine and isoleucine degradation SBML MML
smu00290 Valine, leucine and isoleucine biosynthesis SBML MML
smu00300 Lysine biosynthesis SBML MML
smu00330 Arginine and proline metabolism SBML MML
smu00340 Histidine metabolism SBML MML
smu00350 Tyrosine metabolism SBML MML
smu00360 Phenylalanine metabolism SBML MML
smu00380 Tryptophan metabolism SBML MML
smu00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
smu00401 Novobiocin biosynthesis SBML MML
smu00430 Taurine and hypotaurine metabolism SBML MML
smu00450 Selenoamino acid metabolism SBML MML
smu00460 (Undocumented) SBML MML
smu00471 D-Glutamine and D-glutamate metabolism SBML MML
smu00473 D-Alanine metabolism SBML MML
smu00480 Glutathione metabolism SBML MML
smu00500 Starch and sucrose metabolism SBML MML
smu00520 Amino sugar and nucleotide sugar metabolism SBML MML
smu00521 Streptomycin biosynthesis SBML MML
smu00523 Polyketide sugar unit biosynthesis SBML MML
smu00530 (Undocumented) SBML MML
smu00550 Peptidoglycan biosynthesis SBML MML
smu00561 Glycerolipid metabolism SBML MML
smu00562 Inositol phosphate metabolism SBML MML
smu00564 Glycerophospholipid metabolism SBML MML
smu00620 Pyruvate metabolism SBML MML
smu00624 1- and 2-Methylnaphthalene degradation SBML MML
smu00630 Glyoxylate and dicarboxylate metabolism SBML MML
smu00632 (Undocumented) SBML MML
smu00640 Propanoate metabolism SBML MML
smu00641 3-Chloroacrylic acid degradation SBML MML
smu00643 Styrene degradation SBML MML
smu00650 Butanoate metabolism SBML MML
smu00660 C5-Branched dibasic acid metabolism SBML MML
smu00670 One carbon pool by folate SBML MML
smu00680 Methane metabolism SBML MML
smu00710 (Undocumented) SBML MML
smu00720 (Undocumented) SBML MML
smu00730 Thiamine metabolism SBML MML
smu00740 Riboflavin metabolism SBML MML
smu00750 Vitamin B6 metabolism SBML MML
smu00760 Nicotinate and nicotinamide metabolism SBML MML
smu00770 Pantothenate and CoA biosynthesis SBML MML
smu00780 Biotin metabolism SBML MML
smu00785 Lipoic acid metabolism SBML MML
smu00790 Folate biosynthesis SBML MML
smu00860 Porphyrin and chlorophyll metabolism SBML MML
smu00900 Terpenoid backbone biosynthesis SBML MML
smu00903 (Undocumented) SBML MML
smu00910 Nitrogen metabolism SBML MML
smu00920 Sulfur metabolism SBML MML
smu00970 Aminoacyl-tRNA biosynthesis SBML MML
smu00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
smu00982 (Undocumented) SBML MML
smu00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.