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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sml: Stenotrophomonas maltophilia

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sml00010 Glycolysis / Gluconeogenesis SBML MML
sml00020 Citrate cycle (TCA cycle) SBML MML
sml00030 Pentose phosphate pathway SBML MML
sml00031 (Undocumented) SBML MML
sml00040 Pentose and glucuronate interconversions SBML MML
sml00051 Fructose and mannose metabolism SBML MML
sml00052 Galactose metabolism SBML MML
sml00053 Ascorbate and aldarate metabolism SBML MML
sml00061 Fatty acid biosynthesis SBML MML
sml00062 Fatty acid elongation in mitochondria SBML MML
sml00071 Fatty acid metabolism SBML MML
sml00072 Synthesis and degradation of ketone bodies SBML MML
sml00100 (Undocumented) SBML MML
sml00120 (Undocumented) SBML MML
sml00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sml00150 Androgen and estrogen metabolism SBML MML
sml00220 (Undocumented) SBML MML
sml00230 Purine metabolism SBML MML
sml00240 Pyrimidine metabolism SBML MML
sml00251 (Undocumented) SBML MML
sml00252 (Undocumented) SBML MML
sml00260 Glycine, serine and threonine metabolism SBML MML
sml00271 (Undocumented) SBML MML
sml00272 (Undocumented) SBML MML
sml00280 Valine, leucine and isoleucine degradation SBML MML
sml00281 Geraniol degradation SBML MML
sml00290 Valine, leucine and isoleucine biosynthesis SBML MML
sml00300 Lysine biosynthesis SBML MML
sml00310 Lysine degradation SBML MML
sml00311 Penicillin and cephalosporin biosynthesis SBML MML
sml00330 Arginine and proline metabolism SBML MML
sml00340 Histidine metabolism SBML MML
sml00350 Tyrosine metabolism SBML MML
sml00360 Phenylalanine metabolism SBML MML
sml00361 gamma-Hexachlorocyclohexane degradation SBML MML
sml00362 (Undocumented) SBML MML
sml00363 Bisphenol A degradation SBML MML
sml00364 Fluorobenzoate degradation SBML MML
sml00380 Tryptophan metabolism SBML MML
sml00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sml00401 Novobiocin biosynthesis SBML MML
sml00410 beta-Alanine metabolism SBML MML
sml00450 Selenoamino acid metabolism SBML MML
sml00460 (Undocumented) SBML MML
sml00471 D-Glutamine and D-glutamate metabolism SBML MML
sml00473 D-Alanine metabolism SBML MML
sml00480 Glutathione metabolism SBML MML
sml00500 Starch and sucrose metabolism SBML MML
sml00520 Amino sugar and nucleotide sugar metabolism SBML MML
sml00521 Streptomycin biosynthesis SBML MML
sml00523 Polyketide sugar unit biosynthesis SBML MML
sml00530 (Undocumented) SBML MML
sml00540 Lipopolysaccharide biosynthesis SBML MML
sml00550 Peptidoglycan biosynthesis SBML MML
sml00561 Glycerolipid metabolism SBML MML
sml00562 Inositol phosphate metabolism SBML MML
sml00564 Glycerophospholipid metabolism SBML MML
sml00565 Ether lipid metabolism SBML MML
sml00590 Arachidonic acid metabolism SBML MML
sml00592 alpha-Linolenic acid metabolism SBML MML
sml00620 Pyruvate metabolism SBML MML
sml00622 Toluene and xylene degradation SBML MML
sml00624 1- and 2-Methylnaphthalene degradation SBML MML
sml00626 Naphthalene and anthracene degradation SBML MML
sml00627 1,4-Dichlorobenzene degradation SBML MML
sml00628 Fluorene degradation SBML MML
sml00630 Glyoxylate and dicarboxylate metabolism SBML MML
sml00631 1,2-Dichloroethane degradation SBML MML
sml00632 (Undocumented) SBML MML
sml00640 Propanoate metabolism SBML MML
sml00641 3-Chloroacrylic acid degradation SBML MML
sml00642 Ethylbenzene degradation SBML MML
sml00643 Styrene degradation SBML MML
sml00650 Butanoate metabolism SBML MML
sml00660 C5-Branched dibasic acid metabolism SBML MML
sml00670 One carbon pool by folate SBML MML
sml00680 Methane metabolism SBML MML
sml00710 (Undocumented) SBML MML
sml00720 (Undocumented) SBML MML
sml00730 Thiamine metabolism SBML MML
sml00740 Riboflavin metabolism SBML MML
sml00750 Vitamin B6 metabolism SBML MML
sml00760 Nicotinate and nicotinamide metabolism SBML MML
sml00770 Pantothenate and CoA biosynthesis SBML MML
sml00780 Biotin metabolism SBML MML
sml00790 Folate biosynthesis SBML MML
sml00791 Atrazine degradation SBML MML
sml00860 Porphyrin and chlorophyll metabolism SBML MML
sml00900 Terpenoid backbone biosynthesis SBML MML
sml00903 (Undocumented) SBML MML
sml00910 Nitrogen metabolism SBML MML
sml00920 Sulfur metabolism SBML MML
sml00930 Caprolactam degradation SBML MML
sml00950 (Undocumented) SBML MML
sml00960 (Undocumented) SBML MML
sml00970 Aminoacyl-tRNA biosynthesis SBML MML
sml00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
sml00982 (Undocumented) SBML MML
sml00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.