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Cardiac Physiome Society workshop: November 6-9, 2017 , Toronto

Kegg pathway models for JSim

Organism sme: Sinorhizobium meliloti

to run JSim applets. See JSim Kegg models page for comlete list of Kegg models.

Kegg linkPathwaySBMLMMLDownload Applet
sme00010 Glycolysis / Gluconeogenesis SBML MML
sme00020 Citrate cycle (TCA cycle) SBML MML
sme00030 Pentose phosphate pathway SBML MML
sme00031 (Undocumented) SBML MML
sme00040 Pentose and glucuronate interconversions SBML MML
sme00051 Fructose and mannose metabolism SBML MML
sme00052 Galactose metabolism SBML MML
sme00053 Ascorbate and aldarate metabolism SBML MML
sme00061 Fatty acid biosynthesis SBML MML
sme00062 Fatty acid elongation in mitochondria SBML MML
sme00071 Fatty acid metabolism SBML MML
sme00072 Synthesis and degradation of ketone bodies SBML MML
sme00100 (Undocumented) SBML MML
sme00120 (Undocumented) SBML MML
sme00130 Ubiquinone and other terpenoid-quinone biosynthesis SBML MML
sme00150 Androgen and estrogen metabolism SBML MML
sme00220 (Undocumented) SBML MML
sme00230 Purine metabolism SBML MML
sme00240 Pyrimidine metabolism SBML MML
sme00251 (Undocumented) SBML MML
sme00252 (Undocumented) SBML MML
sme00260 Glycine, serine and threonine metabolism SBML MML
sme00271 (Undocumented) SBML MML
sme00272 (Undocumented) SBML MML
sme00280 Valine, leucine and isoleucine degradation SBML MML
sme00281 Geraniol degradation SBML MML
sme00290 Valine, leucine and isoleucine biosynthesis SBML MML
sme00300 Lysine biosynthesis SBML MML
sme00310 Lysine degradation SBML MML
sme00330 Arginine and proline metabolism SBML MML
sme00340 Histidine metabolism SBML MML
sme00350 Tyrosine metabolism SBML MML
sme00360 Phenylalanine metabolism SBML MML
sme00361 gamma-Hexachlorocyclohexane degradation SBML MML
sme00362 (Undocumented) SBML MML
sme00363 Bisphenol A degradation SBML MML
sme00364 Fluorobenzoate degradation SBML MML
sme00380 Tryptophan metabolism SBML MML
sme00400 Phenylalanine, tyrosine and tryptophan biosynthesis SBML MML
sme00401 Novobiocin biosynthesis SBML MML
sme00410 beta-Alanine metabolism SBML MML
sme00430 Taurine and hypotaurine metabolism SBML MML
sme00440 Phosphonate and phosphinate metabolism SBML MML
sme00450 Selenoamino acid metabolism SBML MML
sme00460 (Undocumented) SBML MML
sme00471 D-Glutamine and D-glutamate metabolism SBML MML
sme00472 D-Arginine and D-ornithine metabolism SBML MML
sme00473 D-Alanine metabolism SBML MML
sme00480 Glutathione metabolism SBML MML
sme00500 Starch and sucrose metabolism SBML MML
sme00520 Amino sugar and nucleotide sugar metabolism SBML MML
sme00521 Streptomycin biosynthesis SBML MML
sme00523 Polyketide sugar unit biosynthesis SBML MML
sme00530 (Undocumented) SBML MML
sme00540 Lipopolysaccharide biosynthesis SBML MML
sme00550 Peptidoglycan biosynthesis SBML MML
sme00561 Glycerolipid metabolism SBML MML
sme00562 Inositol phosphate metabolism SBML MML
sme00564 Glycerophospholipid metabolism SBML MML
sme00592 alpha-Linolenic acid metabolism SBML MML
sme00600 Sphingolipid metabolism SBML MML
sme00620 Pyruvate metabolism SBML MML
sme00622 Toluene and xylene degradation SBML MML
sme00623 2,4-Dichlorobenzoate degradation SBML MML
sme00624 1- and 2-Methylnaphthalene degradation SBML MML
sme00625 (Undocumented) SBML MML
sme00626 Naphthalene and anthracene degradation SBML MML
sme00627 1,4-Dichlorobenzene degradation SBML MML
sme00628 Fluorene degradation SBML MML
sme00630 Glyoxylate and dicarboxylate metabolism SBML MML
sme00631 1,2-Dichloroethane degradation SBML MML
sme00632 (Undocumented) SBML MML
sme00640 Propanoate metabolism SBML MML
sme00641 3-Chloroacrylic acid degradation SBML MML
sme00642 Ethylbenzene degradation SBML MML
sme00643 Styrene degradation SBML MML
sme00650 Butanoate metabolism SBML MML
sme00660 C5-Branched dibasic acid metabolism SBML MML
sme00670 One carbon pool by folate SBML MML
sme00680 Methane metabolism SBML MML
sme00710 (Undocumented) SBML MML
sme00720 (Undocumented) SBML MML
sme00730 Thiamine metabolism SBML MML
sme00740 Riboflavin metabolism SBML MML
sme00750 Vitamin B6 metabolism SBML MML
sme00760 Nicotinate and nicotinamide metabolism SBML MML
sme00770 Pantothenate and CoA biosynthesis SBML MML
sme00780 Biotin metabolism SBML MML
sme00785 Lipoic acid metabolism SBML MML
sme00790 Folate biosynthesis SBML MML
sme00791 Atrazine degradation SBML MML
sme00860 Porphyrin and chlorophyll metabolism SBML MML
sme00900 Terpenoid backbone biosynthesis SBML MML
sme00903 (Undocumented) SBML MML
sme00910 Nitrogen metabolism SBML MML
sme00920 Sulfur metabolism SBML MML
sme00930 Caprolactam degradation SBML MML
sme00940 (Undocumented) SBML MML
sme00950 (Undocumented) SBML MML
sme00960 (Undocumented) SBML MML
sme00970 Aminoacyl-tRNA biosynthesis SBML MML
sme00980 Metabolism of xenobiotics by cytochrome P450 SBML MML
sme00982 (Undocumented) SBML MML
sme00983 (Undocumented) SBML MML

Model development and archiving support at physiome.org provided by the following grants: NIH/NIBIB BE08407 Software Integration, JSim and SBW 6/1/09-5/31/13; NIH/NHLBI T15 HL88516-01 Modeling for Heart, Lung and Blood: From Cell to Organ, 4/1/07-3/31/11; NSF BES-0506477 Adaptive Multi-Scale Model Simulation, 8/15/05-7/31/08; NIH/NHLBI R01 HL073598 Core 3: 3D Imaging and Computer Modeling of the Respiratory Tract, 9/1/04-8/31/09; as well as prior support from NIH/NCRR P41 RR01243 Simulation Resource in Circulatory Mass Transport and Exchange, 12/1/1980-11/30/01 and NIH/NIBIB R01 EB001973 JSim: A Simulation Analysis Platform, 3/1/02-2/28/07.